{"id":"https://openalex.org/W2099305989","doi":"https://doi.org/10.1093/bioinformatics/btr602","title":"Dragon PolyA Spotter: predictor of poly(A) motifs within human genomic DNA sequences","display_name":"Dragon PolyA Spotter: predictor of poly(A) motifs within human genomic DNA sequences","publication_year":2011,"publication_date":"2011-11-15","ids":{"openalex":"https://openalex.org/W2099305989","doi":"https://doi.org/10.1093/bioinformatics/btr602","mag":"2099305989","pmid":"https://pubmed.ncbi.nlm.nih.gov/22088842"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btr602","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr602","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/1/127/50568260/bioinformatics_28_1_127.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"letter","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/28/1/127/50568260/bioinformatics_28_1_127.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5050617056","display_name":"Manal Kalkatawi","orcid":"https://orcid.org/0000-0002-9820-4129"},"institutions":[{"id":"https://openalex.org/I1315135799","display_name":"Marshfield Clinic","ror":"https://ror.org/025chrz76","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1315135799"]},{"id":"https://openalex.org/I4210091018","display_name":"Bioscience Research","ror":"https://ror.org/00bsjtn43","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210091018"]},{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["SA","US"],"is_corresponding":true,"raw_author_name":"Manal Kalkatawi","raw_affiliation_strings":["1 Computational Bioscience Research Center, King Abdullah University of Science and Technology, Thuwal 23955-6900, Kingdom of Saudi Arabia and 2Biomedical Informatics Research Center, MCRF, Marshfield Clinic, 1000 North Oak Avenue, Marshfield, WI 54449, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Computational Bioscience Research Center, King Abdullah University of Science and Technology, Thuwal 23955-6900, Kingdom of Saudi Arabia and 2Biomedical Informatics Research Center, MCRF, Marshfield Clinic, 1000 North Oak Avenue, Marshfield, WI 54449, USA","institution_ids":["https://openalex.org/I4210091018","https://openalex.org/I71920554","https://openalex.org/I1315135799"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055989144","display_name":"Farania Rangkuti","orcid":null},"institutions":[{"id":"https://openalex.org/I1315135799","display_name":"Marshfield Clinic","ror":"https://ror.org/025chrz76","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1315135799"]},{"id":"https://openalex.org/I4210091018","display_name":"Bioscience Research","ror":"https://ror.org/00bsjtn43","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210091018"]},{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["SA","US"],"is_corresponding":false,"raw_author_name":"Farania Rangkuti","raw_affiliation_strings":["1 Computational Bioscience Research Center, King Abdullah University of Science and Technology, Thuwal 23955-6900, Kingdom of Saudi Arabia and 2Biomedical Informatics Research Center, MCRF, Marshfield Clinic, 1000 North Oak Avenue, Marshfield, WI 54449, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Computational Bioscience Research Center, King Abdullah University of Science and Technology, Thuwal 23955-6900, Kingdom of Saudi Arabia and 2Biomedical Informatics Research Center, MCRF, Marshfield Clinic, 1000 North Oak Avenue, Marshfield, WI 54449, USA","institution_ids":["https://openalex.org/I4210091018","https://openalex.org/I71920554","https://openalex.org/I1315135799"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066501951","display_name":"Michael Schramm","orcid":null},"institutions":[{"id":"https://openalex.org/I1315135799","display_name":"Marshfield Clinic","ror":"https://ror.org/025chrz76","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1315135799"]},{"id":"https://openalex.org/I4210091018","display_name":"Bioscience Research","ror":"https://ror.org/00bsjtn43","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210091018"]},{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["SA","US"],"is_corresponding":false,"raw_author_name":"Michael Schramm","raw_affiliation_strings":["1 Computational Bioscience Research Center, King Abdullah University of Science and Technology, Thuwal 23955-6900, Kingdom of Saudi Arabia and 2Biomedical Informatics Research Center, MCRF, Marshfield Clinic, 1000 North Oak Avenue, Marshfield, WI 54449, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Computational Bioscience Research Center, King Abdullah University of Science and Technology, Thuwal 23955-6900, Kingdom of Saudi Arabia and 2Biomedical Informatics Research Center, MCRF, Marshfield Clinic, 1000 North Oak Avenue, Marshfield, WI 54449, USA","institution_ids":["https://openalex.org/I4210091018","https://openalex.org/I71920554","https://openalex.org/I1315135799"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001438860","display_name":"Boris R. Jankovi\u0107","orcid":"https://orcid.org/0000-0003-1868-6007"},"institutions":[{"id":"https://openalex.org/I1315135799","display_name":"Marshfield Clinic","ror":"https://ror.org/025chrz76","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1315135799"]},{"id":"https://openalex.org/I4210091018","display_name":"Bioscience Research","ror":"https://ror.org/00bsjtn43","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210091018"]},{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["SA","US"],"is_corresponding":false,"raw_author_name":"Boris R. Jankovic","raw_affiliation_strings":["1 Computational Bioscience Research Center, King Abdullah University of Science and Technology, Thuwal 23955-6900, Kingdom of Saudi Arabia and 2Biomedical Informatics Research Center, MCRF, Marshfield Clinic, 1000 North Oak Avenue, Marshfield, WI 54449, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Computational Bioscience Research Center, King Abdullah University of Science and Technology, Thuwal 23955-6900, Kingdom of Saudi Arabia and 2Biomedical Informatics Research Center, MCRF, Marshfield Clinic, 1000 North Oak Avenue, Marshfield, WI 54449, USA","institution_ids":["https://openalex.org/I4210091018","https://openalex.org/I71920554","https://openalex.org/I1315135799"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026103082","display_name":"Allan Kamau","orcid":"https://orcid.org/0000-0002-6659-3713"},"institutions":[{"id":"https://openalex.org/I1315135799","display_name":"Marshfield Clinic","ror":"https://ror.org/025chrz76","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1315135799"]},{"id":"https://openalex.org/I4210091018","display_name":"Bioscience Research","ror":"https://ror.org/00bsjtn43","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210091018"]},{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["SA","US"],"is_corresponding":false,"raw_author_name":"Allan Kamau","raw_affiliation_strings":["1 Computational Bioscience Research Center, King Abdullah University of Science and Technology, Thuwal 23955-6900, Kingdom of Saudi Arabia and 2Biomedical Informatics Research Center, MCRF, Marshfield Clinic, 1000 North Oak Avenue, Marshfield, WI 54449, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Computational Bioscience Research Center, King Abdullah University of Science and Technology, Thuwal 23955-6900, Kingdom of Saudi Arabia and 2Biomedical Informatics Research Center, MCRF, Marshfield Clinic, 1000 North Oak Avenue, Marshfield, WI 54449, USA","institution_ids":["https://openalex.org/I4210091018","https://openalex.org/I71920554","https://openalex.org/I1315135799"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108764294","display_name":"Rajesh Chowdhary","orcid":null},"institutions":[{"id":"https://openalex.org/I1315135799","display_name":"Marshfield Clinic","ror":"https://ror.org/025chrz76","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1315135799"]},{"id":"https://openalex.org/I4210091018","display_name":"Bioscience Research","ror":"https://ror.org/00bsjtn43","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210091018"]},{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["SA","US"],"is_corresponding":false,"raw_author_name":"Rajesh Chowdhary","raw_affiliation_strings":["1 Computational Bioscience Research Center, King Abdullah University of Science and Technology, Thuwal 23955-6900, Kingdom of Saudi Arabia and 2Biomedical Informatics Research Center, MCRF, Marshfield Clinic, 1000 North Oak Avenue, Marshfield, WI 54449, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Computational Bioscience Research Center, King Abdullah University of Science and Technology, Thuwal 23955-6900, Kingdom of Saudi Arabia and 2Biomedical Informatics Research Center, MCRF, Marshfield Clinic, 1000 North Oak Avenue, Marshfield, WI 54449, USA","institution_ids":["https://openalex.org/I4210091018","https://openalex.org/I71920554","https://openalex.org/I1315135799"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110537576","display_name":"John A. C. Archer","orcid":"https://orcid.org/0000-0002-3302-3933"},"institutions":[{"id":"https://openalex.org/I1315135799","display_name":"Marshfield Clinic","ror":"https://ror.org/025chrz76","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1315135799"]},{"id":"https://openalex.org/I4210091018","display_name":"Bioscience Research","ror":"https://ror.org/00bsjtn43","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210091018"]},{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["SA","US"],"is_corresponding":false,"raw_author_name":"John A. C. Archer","raw_affiliation_strings":["1 Computational Bioscience Research Center, King Abdullah University of Science and Technology, Thuwal 23955-6900, Kingdom of Saudi Arabia and 2Biomedical Informatics Research Center, MCRF, Marshfield Clinic, 1000 North Oak Avenue, Marshfield, WI 54449, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Computational Bioscience Research Center, King Abdullah University of Science and Technology, Thuwal 23955-6900, Kingdom of Saudi Arabia and 2Biomedical Informatics Research Center, MCRF, Marshfield Clinic, 1000 North Oak Avenue, Marshfield, WI 54449, USA","institution_ids":["https://openalex.org/I4210091018","https://openalex.org/I71920554","https://openalex.org/I1315135799"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5055569646","display_name":"Vladimir B. Baji\u0107","orcid":"https://orcid.org/0000-0001-5435-4750"},"institutions":[{"id":"https://openalex.org/I1315135799","display_name":"Marshfield Clinic","ror":"https://ror.org/025chrz76","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1315135799"]},{"id":"https://openalex.org/I4210091018","display_name":"Bioscience Research","ror":"https://ror.org/00bsjtn43","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210091018"]},{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["SA","US"],"is_corresponding":false,"raw_author_name":"Vladimir B. Bajic","raw_affiliation_strings":["1 Computational Bioscience Research Center, King Abdullah University of Science and Technology, Thuwal 23955-6900, Kingdom of Saudi Arabia and 2Biomedical Informatics Research Center, MCRF, Marshfield Clinic, 1000 North Oak Avenue, Marshfield, WI 54449, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Computational Bioscience Research Center, King Abdullah University of Science and Technology, Thuwal 23955-6900, Kingdom of Saudi Arabia and 2Biomedical Informatics Research Center, MCRF, Marshfield Clinic, 1000 North Oak Avenue, Marshfield, WI 54449, USA","institution_ids":["https://openalex.org/I4210091018","https://openalex.org/I71920554","https://openalex.org/I1315135799"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5050617056"],"corresponding_institution_ids":["https://openalex.org/I1315135799","https://openalex.org/I4210091018","https://openalex.org/I71920554"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":2.1283,"has_fulltext":true,"cited_by_count":58,"citation_normalized_percentile":{"value":0.87360731,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"28","issue":"1","first_page":"127","last_page":"129"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.857200026512146,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.857200026512146,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.021700000390410423,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.02019999921321869,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6471673846244812},{"id":"https://openalex.org/keywords/sequence-motif","display_name":"Sequence motif","score":0.5946670770645142},{"id":"https://openalex.org/keywords/motif","display_name":"Motif (music)","score":0.5831599831581116},{"id":"https://openalex.org/keywords/random-forest","display_name":"Random forest","score":0.5675148367881775},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.5633596181869507},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.536840558052063},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.5198031663894653},{"id":"https://openalex.org/keywords/genomic-dna","display_name":"genomic DNA","score":0.482511043548584},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4351840913295746},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.4144178628921509},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4014451205730438},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.382510781288147},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3789505064487457},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.10942435264587402}],"concepts":[{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6471673846244812},{"id":"https://openalex.org/C117745874","wikidata":"https://www.wikidata.org/wiki/Q901612","display_name":"Sequence motif","level":3,"score":0.5946670770645142},{"id":"https://openalex.org/C32276052","wikidata":"https://www.wikidata.org/wiki/Q908349","display_name":"Motif (music)","level":2,"score":0.5831599831581116},{"id":"https://openalex.org/C169258074","wikidata":"https://www.wikidata.org/wiki/Q245748","display_name":"Random forest","level":2,"score":0.5675148367881775},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.5633596181869507},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.536840558052063},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5198031663894653},{"id":"https://openalex.org/C17757408","wikidata":"https://www.wikidata.org/wiki/Q4135516","display_name":"genomic DNA","level":3,"score":0.482511043548584},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4351840913295746},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.4144178628921509},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4014451205730438},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.382510781288147},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3789505064487457},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.10942435264587402},{"id":"https://openalex.org/C24890656","wikidata":"https://www.wikidata.org/wiki/Q82811","display_name":"Acoustics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011061","descriptor_name":"Poly A","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D011061","descriptor_name":"Poly A","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D011061","descriptor_name":"Poly A","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D011061","descriptor_name":"Poly A","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011061","descriptor_name":"Poly A","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011061","descriptor_name":"Poly A","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012680","descriptor_name":"Sensitivity and Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012680","descriptor_name":"Sensitivity and Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012680","descriptor_name":"Sensitivity and Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/btr602","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr602","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/1/127/50568260/bioinformatics_28_1_127.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:22088842","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22088842","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmid:23616439","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23616439","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:3244764","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3244764","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:repository.kaust.edu.sa:10754/325432","is_oa":true,"landing_page_url":"http://hdl.handle.net/10754/325432","pdf_url":null,"source":{"id":"https://openalex.org/S4306401596","display_name":"King Abdullah University of Science and Technology Repository (King Abdullah University of Science and Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I71920554","host_organization_name":"King Abdullah University of Science and Technology","host_organization_lineage":["https://openalex.org/I71920554"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btr602","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr602","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/28/1/127/50568260/bioinformatics_28_1_127.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","score":0.7799999713897705,"display_name":"Life in Land"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320322320","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2099305989.pdf","grobid_xml":"https://content.openalex.org/works/W2099305989.grobid-xml"},"referenced_works_count":20,"referenced_works":["https://openalex.org/W1588920293","https://openalex.org/W1770412798","https://openalex.org/W1984357741","https://openalex.org/W1997699426","https://openalex.org/W2000731859","https://openalex.org/W2050233629","https://openalex.org/W2093897670","https://openalex.org/W2097979901","https://openalex.org/W2099350714","https://openalex.org/W2105545925","https://openalex.org/W2129429612","https://openalex.org/W2133990480","https://openalex.org/W2140303894","https://openalex.org/W2157485293","https://openalex.org/W2159554382","https://openalex.org/W2162139029","https://openalex.org/W2911964244","https://openalex.org/W3098897816","https://openalex.org/W6635243895","https://openalex.org/W6675325605"],"related_works":["https://openalex.org/W2361861616","https://openalex.org/W2263699433","https://openalex.org/W2377979023","https://openalex.org/W2073661767","https://openalex.org/W2380185347","https://openalex.org/W2370034659","https://openalex.org/W2159636084","https://openalex.org/W2117168988","https://openalex.org/W2103777723","https://openalex.org/W2610941444"],"abstract_inverted_index":{"MOTIVATION:":[0],"Recognition":[1,46],"of":[2,14,23,47,58,77,149],"poly(A)":[3,25,36,48,70,84,114,153],"signals":[4,37,49],"in":[5,27,38,116],"mRNA":[6,39],"is":[7,40,50],"relatively":[8],"straightforward":[9],"due":[10],"to":[11,35,109],"the":[12,21,28,59],"presence":[13],"easily":[15],"recognizable":[16],"polyadenylic":[17],"acid":[18],"tail.":[19],"However,":[20],"task":[22],"identifying":[24],"motifs":[26,115],"primary":[29],"genomic":[30,79],"DNA":[31,80],"sequence":[32,81],"that":[33],"correspond":[34],"a":[41,83,124,146],"far":[42],"more":[43],"challenging":[44],"problem.":[45],"important":[51],"for":[52,151],"better":[53],"gene":[54,60],"annotation":[55],"and":[56,91,101,141,143],"understanding":[57],"regulation":[61],"mechanisms.":[62],"In":[63],"this":[64],"work,":[65],"we":[66,96],"present":[67],"one":[68],"such":[69],"motif":[71,154],"prediction":[72],"method":[73],"based":[74],"on":[75],"properties":[76,87],"human":[78,117],"surrounding":[82],"motif.":[85],"These":[86,105],"include":[88],"thermodynamic,":[89],"physico-chemical":[90],"statistical":[92],"characteristics.":[93],"For":[94],"predictions,":[95],"developed":[97],"Artificial":[98],"Neural":[99],"Network":[100],"Random":[102],"Forest":[103],"models.":[104],"models":[106,137],"are":[107,121,162],"trained":[108],"recognize":[110],"12":[111,152],"most":[112],"common":[113],"DNA.":[118],"Our":[119],"predictors":[120],"available":[122,163],"as":[123],"free":[125],"web-based":[126],"tool":[127],"accessible":[128],"at":[129,164],"http://cbrc.kaust.edu.sa/dps.":[130],"Compared":[131],"with":[132],"other":[133],"reported":[134],"predictors,":[135],"our":[136],"achieve":[138],"higher":[139],"sensitivity":[140],"specificity":[142],"furthermore":[144],"provide":[145],"consistent":[147],"level":[148],"accuracy":[150],"variants.":[155],"CONTACT:":[156],"vladimir.bajic@kaust.edu.sa":[157],"SUPPLEMENTARY":[158],"INFORMATION:":[159],"Supplementary":[160],"data":[161],"Bioinformatics":[165],"online.":[166]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":6},{"year":2017,"cited_by_count":7},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":9},{"year":2013,"cited_by_count":7}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2016-06-24T00:00:00"}
