{"id":"https://openalex.org/W2120301307","doi":"https://doi.org/10.1093/bioinformatics/btr571","title":"The Infobiotics Workbench: an integrated in silico modelling platform for Systems and Synthetic Biology","display_name":"The Infobiotics Workbench: an integrated in silico modelling platform for Systems and Synthetic Biology","publication_year":2011,"publication_date":"2011-10-12","ids":{"openalex":"https://openalex.org/W2120301307","doi":"https://doi.org/10.1093/bioinformatics/btr571","mag":"2120301307","pmid":"https://pubmed.ncbi.nlm.nih.gov/21994219"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btr571","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr571","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/23/3323/48860983/bioinformatics_27_23_3323.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/27/23/3323/48860983/bioinformatics_27_23_3323.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5063265832","display_name":"Jonathan Blakes","orcid":null},"institutions":[{"id":"https://openalex.org/I142263535","display_name":"University of Nottingham","ror":"https://ror.org/01ee9ar58","country_code":"GB","type":"education","lineage":["https://openalex.org/I142263535"]},{"id":"https://openalex.org/I79238269","display_name":"Universidad de Sevilla","ror":"https://ror.org/03yxnpp24","country_code":"ES","type":"education","lineage":["https://openalex.org/I79238269"]}],"countries":["ES","GB"],"is_corresponding":false,"raw_author_name":"Jonathan Blakes","raw_affiliation_strings":["1 Automated Scheduling, Optimisation and Planning Group, School of Computer Science, University of Nottingham, Nottingham, NG8 1BB, 2The Centre for Plant Integrative Biology, School of Biosciences, University of Nottingham, LE12 5RD, UK and 3Department of Computer Science and Artificial Intelligence, University of Seville, 41012, Seville, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Automated Scheduling, Optimisation and Planning Group, School of Computer Science, University of Nottingham, Nottingham, NG8 1BB, 2The Centre for Plant Integrative Biology, School of Biosciences, University of Nottingham, LE12 5RD, UK and 3Department of Computer Science and Artificial Intelligence, University of Seville, 41012, Seville, Spain","institution_ids":["https://openalex.org/I142263535","https://openalex.org/I79238269"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003669992","display_name":"Jamie Twycross","orcid":"https://orcid.org/0000-0002-1684-0886"},"institutions":[{"id":"https://openalex.org/I142263535","display_name":"University of Nottingham","ror":"https://ror.org/01ee9ar58","country_code":"GB","type":"education","lineage":["https://openalex.org/I142263535"]},{"id":"https://openalex.org/I79238269","display_name":"Universidad de Sevilla","ror":"https://ror.org/03yxnpp24","country_code":"ES","type":"education","lineage":["https://openalex.org/I79238269"]}],"countries":["ES","GB"],"is_corresponding":false,"raw_author_name":"Jamie Twycross","raw_affiliation_strings":["1 Automated Scheduling, Optimisation and Planning Group, School of Computer Science, University of Nottingham, Nottingham, NG8 1BB, 2The Centre for Plant Integrative Biology, School of Biosciences, University of Nottingham, LE12 5RD, UK and 3Department of Computer Science and Artificial Intelligence, University of Seville, 41012, Seville, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Automated Scheduling, Optimisation and Planning Group, School of Computer Science, University of Nottingham, Nottingham, NG8 1BB, 2The Centre for Plant Integrative Biology, School of Biosciences, University of Nottingham, LE12 5RD, UK and 3Department of Computer Science and Artificial Intelligence, University of Seville, 41012, Seville, Spain","institution_ids":["https://openalex.org/I142263535","https://openalex.org/I79238269"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021627857","display_name":"Francisco J. Romero\u2013Campero","orcid":"https://orcid.org/0000-0001-9834-030X"},"institutions":[{"id":"https://openalex.org/I142263535","display_name":"University of Nottingham","ror":"https://ror.org/01ee9ar58","country_code":"GB","type":"education","lineage":["https://openalex.org/I142263535"]},{"id":"https://openalex.org/I79238269","display_name":"Universidad de Sevilla","ror":"https://ror.org/03yxnpp24","country_code":"ES","type":"education","lineage":["https://openalex.org/I79238269"]}],"countries":["ES","GB"],"is_corresponding":false,"raw_author_name":"Francisco Jose Romero\u2212Campero","raw_affiliation_strings":["1 Automated Scheduling, Optimisation and Planning Group, School of Computer Science, University of Nottingham, Nottingham, NG8 1BB, 2The Centre for Plant Integrative Biology, School of Biosciences, University of Nottingham, LE12 5RD, UK and 3Department of Computer Science and Artificial Intelligence, University of Seville, 41012, Seville, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Automated Scheduling, Optimisation and Planning Group, School of Computer Science, University of Nottingham, Nottingham, NG8 1BB, 2The Centre for Plant Integrative Biology, School of Biosciences, University of Nottingham, LE12 5RD, UK and 3Department of Computer Science and Artificial Intelligence, University of Seville, 41012, Seville, Spain","institution_ids":["https://openalex.org/I142263535","https://openalex.org/I79238269"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5043620976","display_name":"Natalio Krasnogor","orcid":"https://orcid.org/0000-0002-2651-4320"},"institutions":[{"id":"https://openalex.org/I142263535","display_name":"University of Nottingham","ror":"https://ror.org/01ee9ar58","country_code":"GB","type":"education","lineage":["https://openalex.org/I142263535"]},{"id":"https://openalex.org/I79238269","display_name":"Universidad de Sevilla","ror":"https://ror.org/03yxnpp24","country_code":"ES","type":"education","lineage":["https://openalex.org/I79238269"]}],"countries":["ES","GB"],"is_corresponding":true,"raw_author_name":"Natalio Krasnogor","raw_affiliation_strings":["1 Automated Scheduling, Optimisation and Planning Group, School of Computer Science, University of Nottingham, Nottingham, NG8 1BB, 2The Centre for Plant Integrative Biology, School of Biosciences, University of Nottingham, LE12 5RD, UK and 3Department of Computer Science and Artificial Intelligence, University of Seville, 41012, Seville, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Automated Scheduling, Optimisation and Planning Group, School of Computer Science, University of Nottingham, Nottingham, NG8 1BB, 2The Centre for Plant Integrative Biology, School of Biosciences, University of Nottingham, LE12 5RD, UK and 3Department of Computer Science and Artificial Intelligence, University of Seville, 41012, Seville, Spain","institution_ids":["https://openalex.org/I142263535","https://openalex.org/I79238269"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5043620976"],"corresponding_institution_ids":["https://openalex.org/I142263535","https://openalex.org/I79238269"],"apc_list":{"value":3989,"currency":"USD","value_usd":3989},"apc_paid":{"value":3989,"currency":"USD","value_usd":3989},"fwci":3.2974,"has_fulltext":true,"cited_by_count":46,"citation_normalized_percentile":{"value":0.93018856,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"27","issue":"23","first_page":"3323","last_page":"3324"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.8373000025749207,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.8373000025749207,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.07429999858140945,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11445","display_name":"Origins and Evolution of Life","score":0.021900000050663948,"subfield":{"id":"https://openalex.org/subfields/3103","display_name":"Astronomy and Astrophysics"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/workbench","display_name":"Workbench","score":0.9468408226966858},{"id":"https://openalex.org/keywords/modular-design","display_name":"Modular design","score":0.7352452874183655},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7322477102279663},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5858813524246216},{"id":"https://openalex.org/keywords/suite","display_name":"Suite","score":0.5506711006164551},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.5409986972808838},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.48198384046554565},{"id":"https://openalex.org/keywords/software-suite","display_name":"Software suite","score":0.47358042001724243},{"id":"https://openalex.org/keywords/model-checking","display_name":"Model checking","score":0.4678203761577606},{"id":"https://openalex.org/keywords/mit-license","display_name":"MIT License","score":0.4587779939174652},{"id":"https://openalex.org/keywords/sbml","display_name":"SBML","score":0.42935436964035034},{"id":"https://openalex.org/keywords/scale","display_name":"Scale (ratio)","score":0.42442038655281067},{"id":"https://openalex.org/keywords/code","display_name":"Code (set theory)","score":0.41985446214675903},{"id":"https://openalex.org/keywords/os-x","display_name":"OS X","score":0.41334372758865356},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.32931965589523315},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.3263357877731323},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.18993616104125977},{"id":"https://openalex.org/keywords/markup-language","display_name":"Markup language","score":0.1437152624130249},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.12951946258544922},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.10608795285224915},{"id":"https://openalex.org/keywords/xml","display_name":"XML","score":0.08856838941574097}],"concepts":[{"id":"https://openalex.org/C2779145975","wikidata":"https://www.wikidata.org/wiki/Q347690","display_name":"Workbench","level":3,"score":0.9468408226966858},{"id":"https://openalex.org/C101468663","wikidata":"https://www.wikidata.org/wiki/Q1620158","display_name":"Modular design","level":2,"score":0.7352452874183655},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7322477102279663},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5858813524246216},{"id":"https://openalex.org/C79581498","wikidata":"https://www.wikidata.org/wiki/Q1367530","display_name":"Suite","level":2,"score":0.5506711006164551},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.5409986972808838},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.48198384046554565},{"id":"https://openalex.org/C2778736646","wikidata":"https://www.wikidata.org/wiki/Q1143070","display_name":"Software suite","level":3,"score":0.47358042001724243},{"id":"https://openalex.org/C110251889","wikidata":"https://www.wikidata.org/wiki/Q1569697","display_name":"Model checking","level":2,"score":0.4678203761577606},{"id":"https://openalex.org/C174183944","wikidata":"https://www.wikidata.org/wiki/Q334661","display_name":"MIT License","level":3,"score":0.4587779939174652},{"id":"https://openalex.org/C87186988","wikidata":"https://www.wikidata.org/wiki/Q452197","display_name":"SBML","level":4,"score":0.42935436964035034},{"id":"https://openalex.org/C2778755073","wikidata":"https://www.wikidata.org/wiki/Q10858537","display_name":"Scale (ratio)","level":2,"score":0.42442038655281067},{"id":"https://openalex.org/C2776760102","wikidata":"https://www.wikidata.org/wiki/Q5139990","display_name":"Code (set theory)","level":3,"score":0.41985446214675903},{"id":"https://openalex.org/C515153823","wikidata":"https://www.wikidata.org/wiki/Q14116","display_name":"OS X","level":3,"score":0.41334372758865356},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.32931965589523315},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.3263357877731323},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.18993616104125977},{"id":"https://openalex.org/C45874996","wikidata":"https://www.wikidata.org/wiki/Q37045","display_name":"Markup language","level":3,"score":0.1437152624130249},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.12951946258544922},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.10608795285224915},{"id":"https://openalex.org/C8797682","wikidata":"https://www.wikidata.org/wiki/Q2115","display_name":"XML","level":2,"score":0.08856838941574097},{"id":"https://openalex.org/C95457728","wikidata":"https://www.wikidata.org/wiki/Q309","display_name":"History","level":0,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C166957645","wikidata":"https://www.wikidata.org/wiki/Q23498","display_name":"Archaeology","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058615","descriptor_name":"Synthetic Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058615","descriptor_name":"Synthetic Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058615","descriptor_name":"Synthetic Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/btr571","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr571","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/23/3323/48860983/bioinformatics_27_23_3323.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmh:oai:pubmedcentral.nih.gov:3223367","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3223367","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmid:21994219","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21994219","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":"Journal Article"},{"id":"pmh:oai:idus.us.es:11441/86737","is_oa":true,"landing_page_url":"https://hdl.handle.net/11441/86737","pdf_url":null,"source":{"id":"https://openalex.org/S4306401665","display_name":"Deposito de Investigacion Universidad de Sevilla (University of Seville)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I79238269","host_organization_name":"Universidad de Sevilla","host_organization_lineage":["https://openalex.org/I79238269"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"journal article"},{"id":"pmh:oai:open-archive.highwire.org:bioinfo:27/23/3323","is_oa":false,"landing_page_url":"http://bioinformatics.oxfordjournals.org/cgi/content/short/27/23/3323","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btr571","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr571","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/23/3323/48860983/bioinformatics_27_23_3323.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1595273680","display_name":null,"funder_award_id":"BB/D019613/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G1895682765","display_name":"Towards a Universal Biological-Cell Operating System (AUdACiOuS)","funder_award_id":"EP/J004111/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G2811169984","display_name":"ROADBLOCK: Towards Programmable Defensive Bacterial Coatings &amp; Skins","funder_award_id":"EP/I031642/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G467919431","display_name":null,"funder_award_id":"BB/D019613/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G8979046529","display_name":"Centre for Plant Integrative Biology","funder_award_id":"BB/D019613/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320334627","display_name":"Engineering and Physical Sciences Research Council","ror":"https://ror.org/0439y7842"},{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2120301307.pdf","grobid_xml":"https://content.openalex.org/works/W2120301307.grobid-xml"},"referenced_works_count":15,"referenced_works":["https://openalex.org/W93312097","https://openalex.org/W1595159159","https://openalex.org/W1785790772","https://openalex.org/W2019346659","https://openalex.org/W2038679774","https://openalex.org/W2112036188","https://openalex.org/W2117364474","https://openalex.org/W2118546156","https://openalex.org/W2139768072","https://openalex.org/W2150908245","https://openalex.org/W2161592450","https://openalex.org/W2167154952","https://openalex.org/W2169360734","https://openalex.org/W2171501814","https://openalex.org/W6684974061"],"related_works":["https://openalex.org/W4225089214","https://openalex.org/W4308825558","https://openalex.org/W2467414813","https://openalex.org/W1964246733","https://openalex.org/W1981336497","https://openalex.org/W3118682726","https://openalex.org/W3195605572","https://openalex.org/W2114853012","https://openalex.org/W2120301307","https://openalex.org/W3109654795"],"abstract_inverted_index":{"SUMMARY:":[0],"The":[1],"Infobiotics":[2],"Workbench":[3],"is":[4],"an":[5],"integrated":[6],"software":[7],"suite":[8],"incorporating":[9],"model":[10,16,25,66,71],"specification,":[11],"simulation,":[12],"parameter":[13],"optimization":[14],"and":[15,20,37,49,53,57,65,76,81],"checking":[17],"for":[18,28,78],"Systems":[19],"Synthetic":[21],"Biology.":[22],"A":[23],"modular":[24],"specification":[26],"allows":[27],"straightforward":[29],"creation":[30],"of":[31],"large-scale":[32],"models":[33],"containing":[34],"many":[35],"compartments":[36],"reactions.":[38],"Models":[39],"are":[40,83],"simulated":[41],"either":[42],"using":[43,69],"stochastic":[44],"simulation":[45],"or":[46],"numerical":[47],"integration,":[48],"visualized":[50],"in":[51],"time":[52],"space.":[54],"Model":[55],"parameters":[56],"structure":[58],"can":[59],"be":[60],"optimized":[61],"with":[62],"evolutionary":[63],"algorithms,":[64],"properties":[67],"calculated":[68],"probabilistic":[70],"checking.":[72],"AVAILABILITY:":[73],"Source":[74],"code":[75],"binaries":[77],"Linux,":[79],"Mac":[80],"Windows":[82],"available":[84],"at":[85],"http://www.infobiotics.org/infobiotics-workbench/;":[86],"released":[87],"under":[88],"the":[89],"GNU":[90],"General":[91],"Public":[92],"License":[93],"(GPL)":[94],"version":[95],"3.":[96],"CONTACT:":[97],"Natalio.Krasnogor@nottingham.ac.uk.":[98]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2021,"cited_by_count":6},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":12},{"year":2013,"cited_by_count":10},{"year":2012,"cited_by_count":4}],"updated_date":"2026-08-26T07:47:46.906454","created_date":"2016-06-24T00:00:00"}
