{"id":"https://openalex.org/W2140759507","doi":"https://doi.org/10.1093/bioinformatics/btr569","title":"Visualization and quality assessment of <i>de novo</i> genome assemblies","display_name":"Visualization and quality assessment of <i>de novo</i> genome assemblies","publication_year":2011,"publication_date":"2011-10-12","ids":{"openalex":"https://openalex.org/W2140759507","doi":"https://doi.org/10.1093/bioinformatics/btr569","mag":"2140759507","pmid":"https://pubmed.ncbi.nlm.nih.gov/21994228"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btr569","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr569","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/24/3425/48861159/bioinformatics_27_24_3425.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/27/24/3425/48861159/bioinformatics_27_24_3425.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5087084948","display_name":"Oksana Riba\u2010Grognuz","orcid":"https://orcid.org/0000-0002-2961-2655"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I97565354","display_name":"University of Lausanne","ror":"https://ror.org/019whta54","country_code":"CH","type":"education","lineage":["https://openalex.org/I97565354"]}],"countries":["CH"],"is_corresponding":true,"raw_author_name":"Oksana Riba-Grognuz","raw_affiliation_strings":["1 Department of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland, 2Vital-IT Group, Swiss Institute for Bioinformatics, 1015 Lausanne and 3Swiss-Prot Group, Swiss Institute of Bioinformatics, Centre M\u00e9dical Universitaire, 1211 Geneva 4, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland, 2Vital-IT Group, Swiss Institute for Bioinformatics, 1015 Lausanne and 3Swiss-Prot Group, Swiss Institute of Bioinformatics, Centre M\u00e9dical Universitaire, 1211 Geneva 4, Switzerland","institution_ids":["https://openalex.org/I12708293","https://openalex.org/I97565354"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042648272","display_name":"Laurent Keller","orcid":"https://orcid.org/0000-0002-5046-9953"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I97565354","display_name":"University of Lausanne","ror":"https://ror.org/019whta54","country_code":"CH","type":"education","lineage":["https://openalex.org/I97565354"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Laurent Keller","raw_affiliation_strings":["1 Department of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland, 2Vital-IT Group, Swiss Institute for Bioinformatics, 1015 Lausanne and 3Swiss-Prot Group, Swiss Institute of Bioinformatics, Centre M\u00e9dical Universitaire, 1211 Geneva 4, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland, 2Vital-IT Group, Swiss Institute for Bioinformatics, 1015 Lausanne and 3Swiss-Prot Group, Swiss Institute of Bioinformatics, Centre M\u00e9dical Universitaire, 1211 Geneva 4, Switzerland","institution_ids":["https://openalex.org/I12708293","https://openalex.org/I97565354"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009886872","display_name":"Laurent Falquet","orcid":"https://orcid.org/0000-0001-8102-7579"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I97565354","display_name":"University of Lausanne","ror":"https://ror.org/019whta54","country_code":"CH","type":"education","lineage":["https://openalex.org/I97565354"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Laurent Falquet","raw_affiliation_strings":["1 Department of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland, 2Vital-IT Group, Swiss Institute for Bioinformatics, 1015 Lausanne and 3Swiss-Prot Group, Swiss Institute of Bioinformatics, Centre M\u00e9dical Universitaire, 1211 Geneva 4, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland, 2Vital-IT Group, Swiss Institute for Bioinformatics, 1015 Lausanne and 3Swiss-Prot Group, Swiss Institute of Bioinformatics, Centre M\u00e9dical Universitaire, 1211 Geneva 4, Switzerland","institution_ids":["https://openalex.org/I12708293","https://openalex.org/I97565354"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065825020","display_name":"Ioannis X\u00e9narios","orcid":"https://orcid.org/0000-0002-3413-6841"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I97565354","display_name":"University of Lausanne","ror":"https://ror.org/019whta54","country_code":"CH","type":"education","lineage":["https://openalex.org/I97565354"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Ioannis Xenarios","raw_affiliation_strings":["1 Department of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland, 2Vital-IT Group, Swiss Institute for Bioinformatics, 1015 Lausanne and 3Swiss-Prot Group, Swiss Institute of Bioinformatics, Centre M\u00e9dical Universitaire, 1211 Geneva 4, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland, 2Vital-IT Group, Swiss Institute for Bioinformatics, 1015 Lausanne and 3Swiss-Prot Group, Swiss Institute of Bioinformatics, Centre M\u00e9dical Universitaire, 1211 Geneva 4, Switzerland","institution_ids":["https://openalex.org/I12708293","https://openalex.org/I97565354"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5084208090","display_name":"Yannick Wurm","orcid":"https://orcid.org/0000-0002-3140-2809"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I97565354","display_name":"University of Lausanne","ror":"https://ror.org/019whta54","country_code":"CH","type":"education","lineage":["https://openalex.org/I97565354"]}],"countries":["CH"],"is_corresponding":true,"raw_author_name":"Yannick Wurm","raw_affiliation_strings":["1 Department of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland, 2Vital-IT Group, Swiss Institute for Bioinformatics, 1015 Lausanne and 3Swiss-Prot Group, Swiss Institute of Bioinformatics, Centre M\u00e9dical Universitaire, 1211 Geneva 4, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Ecology and Evolution, University of Lausanne, 1015 Lausanne, Switzerland, 2Vital-IT Group, Swiss Institute for Bioinformatics, 1015 Lausanne and 3Swiss-Prot Group, Swiss Institute of Bioinformatics, Centre M\u00e9dical Universitaire, 1211 Geneva 4, Switzerland","institution_ids":["https://openalex.org/I12708293","https://openalex.org/I97565354"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5084208090","https://openalex.org/A5087084948"],"corresponding_institution_ids":["https://openalex.org/I12708293","https://openalex.org/I97565354"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.1311,"has_fulltext":true,"cited_by_count":10,"citation_normalized_percentile":{"value":0.53742703,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"27","issue":"24","first_page":"3425","last_page":"3426"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.8593999743461609,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.8593999743461609,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10702","display_name":"Insect and Arachnid Ecology and Behavior","score":0.06769999861717224,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.010400000028312206,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.768082857131958},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5506722331047058},{"id":"https://openalex.org/keywords/quality","display_name":"Quality (philosophy)","score":0.542071521282196},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.4785081446170807},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4522072970867157},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.30250900983810425},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.2791348397731781},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.19794362783432007},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.07982933521270752},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.0771169364452362}],"concepts":[{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.768082857131958},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5506722331047058},{"id":"https://openalex.org/C2779530757","wikidata":"https://www.wikidata.org/wiki/Q1207505","display_name":"Quality (philosophy)","level":2,"score":0.542071521282196},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.4785081446170807},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4522072970867157},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.30250900983810425},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.2791348397731781},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.19794362783432007},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.07982933521270752},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0771169364452362},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D026801","descriptor_name":"Synteny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D026801","descriptor_name":"Synteny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D026801","descriptor_name":"Synteny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/btr569","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr569","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/24/3425/48861159/bioinformatics_27_24_3425.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:21994228","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21994228","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:serval.unil.ch:BIB_78E4EA5A315D","is_oa":true,"landing_page_url":"https://serval.unil.ch/notice/serval:BIB_78E4EA5A315D","pdf_url":null,"source":{"id":"https://openalex.org/S4306401797","display_name":"SERVAL (Universit\u00e9 de Lausanne)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210093590","host_organization_name":"Swiss School of Archaeology in Greece","host_organization_lineage":["https://openalex.org/I4210093590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics, vol. 27, no. 24, pp. 3425-3426","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:iris.unil.ch:iris/138096","is_oa":true,"landing_page_url":"https://iris.unil.ch/handle/iris/138096","pdf_url":"https://iris.unil.ch/bitstreams/264419da-645e-4995-aa8a-7d3fa20774c8/download","source":{"id":"https://openalex.org/S7407055444","display_name":"IRIS","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"journal article"},{"id":"pmh:oai:open-archive.highwire.org:bioinfo:27/24/3425","is_oa":false,"landing_page_url":"http://bioinformatics.oxfordjournals.org/cgi/content/short/27/24/3425","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btr569","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr569","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/24/3425/48861159/bioinformatics_27_24_3425.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","score":0.4300000071525574,"display_name":"Industry, innovation and infrastructure"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320320924","display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung","ror":"https://ror.org/00yjd3n13"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2140759507.pdf","grobid_xml":"https://content.openalex.org/works/W2140759507.grobid-xml"},"referenced_works_count":11,"referenced_works":["https://openalex.org/W1921457844","https://openalex.org/W1976049389","https://openalex.org/W1990095531","https://openalex.org/W2001246517","https://openalex.org/W2005607933","https://openalex.org/W2107164256","https://openalex.org/W2107224171","https://openalex.org/W2112439337","https://openalex.org/W2140635350","https://openalex.org/W2141157287","https://openalex.org/W2159675211"],"related_works":["https://openalex.org/W2082860237","https://openalex.org/W2119695867","https://openalex.org/W2130076355","https://openalex.org/W1990804418","https://openalex.org/W1993764875","https://openalex.org/W2046158694","https://openalex.org/W2788277189","https://openalex.org/W2013243191","https://openalex.org/W2117258802","https://openalex.org/W4234157524"],"abstract_inverted_index":{"SUMMARY:":[0],"Recent":[1],"technological":[2],"progress":[3],"has":[4],"greatly":[5],"facilitated":[6],"de":[7,12],"novo":[8,13],"genome":[9,53,63,78],"sequencing.":[10],"However,":[11],"assemblies":[14,41],"consist":[15],"in":[16,24,91,96,113],"many":[17],"pieces":[18],"of":[19,26,29,32,39,79,101],"contiguous":[20],"sequence":[21,117],"(contigs)":[22],"arranged":[23],"thousands":[25],"scaffolds":[27],"instead":[28],"small":[30],"numbers":[31],"chromosomes.":[33],"Confirming":[34],"and":[35,64,98,118],"improving":[36],"the":[37,62,67,70,77,80],"quality":[38],"such":[40],"is":[42],"critical":[43],"for":[44,111],"subsequent":[45],"analysis.":[46],"We":[47],"present":[48],"a":[49],"method":[50,75],"to":[51,61,76,88],"evaluate":[52],"scaffolding":[54,119],"by":[55],"aligning":[56],"independently":[57],"obtained":[58],"transcriptome":[59],"sequences":[60],"visually":[65],"summarizing":[66],"alignments":[68],"using":[69],"Cytoscape":[71,114],"software.":[72],"Applying":[73],"this":[74],"red":[81],"fire":[82],"ant":[83],"Solenopsis":[84],"invicta":[85],"allowed":[86],"us":[87],"identify":[89],"inconsistencies":[90],"7%,":[92],"confirm":[93],"contig":[94],"order":[95],"20%":[97],"extend":[99],"16%":[100],"scaffolds.":[102],"CONTACT:":[103],"oksana.ribagrognuz@unil.ch;":[104],"yannick.wurm@unil.ch":[105],"AVAILABILITY:":[106],"Scripts":[107],"that":[108],"generate":[109],"tables":[110],"visualization":[112],"from":[115],"FASTA":[116],"information":[120],"files":[121],"are":[122,131],"publicly":[123],"available":[124,132],"at":[125,133],"https://github.com/ksanao/TGNet.":[126],"SUPPLEMENTARY":[127],"INFORMATION:":[128],"Supplementary":[129],"data":[130],"Bioinformatics":[134],"online.":[135]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":3},{"year":2013,"cited_by_count":1}],"updated_date":"2026-06-23T06:36:01.041984","created_date":"2016-06-24T00:00:00"}
