{"id":"https://openalex.org/W2168544607","doi":"https://doi.org/10.1093/bioinformatics/btr560","title":"KABOOM! A new suffix array based algorithm for clustering expression data","display_name":"KABOOM! A new suffix array based algorithm for clustering expression data","publication_year":2011,"publication_date":"2011-10-08","ids":{"openalex":"https://openalex.org/W2168544607","doi":"https://doi.org/10.1093/bioinformatics/btr560","mag":"2168544607","pmid":"https://pubmed.ncbi.nlm.nih.gov/21984769"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btr560","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr560","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5010060892","display_name":"Scott Hazelhurst","orcid":"https://orcid.org/0000-0002-0581-149X"},"institutions":[{"id":"https://openalex.org/I192619145","display_name":"University of the Witwatersrand","ror":"https://ror.org/03rp50x72","country_code":"ZA","type":"education","lineage":["https://openalex.org/I192619145"]},{"id":"https://openalex.org/I131729948","display_name":"University of Salerno","ror":"https://ror.org/0192m2k53","country_code":"IT","type":"education","lineage":["https://openalex.org/I131729948"]}],"countries":["IT","ZA"],"is_corresponding":true,"raw_author_name":"Scott Hazelhurst","raw_affiliation_strings":["1 Wits Bioinformatics, School of Electrical and Information Engineering, University of the Witwatersrand, Johannesburg, Private Bag 3, 2050 Wits, South Africa and 2Universit\u00e0 degli Studi di Salerno, Dipartimento di Informatica, Via Ponte don Melillo, 1, 84084 Fisciano, Italy"],"affiliations":[{"raw_affiliation_string":"1 Wits Bioinformatics, School of Electrical and Information Engineering, University of the Witwatersrand, Johannesburg, Private Bag 3, 2050 Wits, South Africa and 2Universit\u00e0 degli Studi di Salerno, Dipartimento di Informatica, Via Ponte don Melillo, 1, 84084 Fisciano, Italy","institution_ids":["https://openalex.org/I131729948","https://openalex.org/I192619145"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5017689080","display_name":"Zsuzsanna Lipt\u00e1k","orcid":"https://orcid.org/0000-0002-3233-0691"},"institutions":[{"id":"https://openalex.org/I192619145","display_name":"University of the Witwatersrand","ror":"https://ror.org/03rp50x72","country_code":"ZA","type":"education","lineage":["https://openalex.org/I192619145"]},{"id":"https://openalex.org/I131729948","display_name":"University of Salerno","ror":"https://ror.org/0192m2k53","country_code":"IT","type":"education","lineage":["https://openalex.org/I131729948"]}],"countries":["IT","ZA"],"is_corresponding":false,"raw_author_name":"Zsuzsanna Lipt\u00e1k","raw_affiliation_strings":["1 Wits Bioinformatics, School of Electrical and Information Engineering, University of the Witwatersrand, Johannesburg, Private Bag 3, 2050 Wits, South Africa and 2Universit\u00e0 degli Studi di Salerno, Dipartimento di Informatica, Via Ponte don Melillo, 1, 84084 Fisciano, Italy"],"affiliations":[{"raw_affiliation_string":"1 Wits Bioinformatics, School of Electrical and Information Engineering, University of the Witwatersrand, Johannesburg, Private Bag 3, 2050 Wits, South Africa and 2Universit\u00e0 degli Studi di Salerno, Dipartimento di Informatica, Via Ponte don Melillo, 1, 84084 Fisciano, Italy","institution_ids":["https://openalex.org/I131729948","https://openalex.org/I192619145"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5010060892"],"corresponding_institution_ids":["https://openalex.org/I131729948","https://openalex.org/I192619145"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":3.5086,"has_fulltext":false,"cited_by_count":16,"citation_normalized_percentile":{"value":0.93300583,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"27","issue":"24","first_page":"3348","last_page":"3355"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9950000047683716,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9830999970436096,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.7882774472236633},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7496175765991211},{"id":"https://openalex.org/keywords/suffix","display_name":"Suffix","score":0.6639175415039062},{"id":"https://openalex.org/keywords/string","display_name":"String (physics)","score":0.6475629806518555},{"id":"https://openalex.org/keywords/filter","display_name":"Filter (signal processing)","score":0.6144357919692993},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.5657095313072205},{"id":"https://openalex.org/keywords/heuristic","display_name":"Heuristic","score":0.5601382255554199},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5426881313323975},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.5179802179336548},{"id":"https://openalex.org/keywords/code","display_name":"Code (set theory)","score":0.5064793825149536},{"id":"https://openalex.org/keywords/expression","display_name":"Expression (computer science)","score":0.4899281859397888},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.4451107084751129},{"id":"https://openalex.org/keywords/regular-expression","display_name":"Regular expression","score":0.43570151925086975},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.21937230229377747},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.1399960219860077},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.12785866856575012},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.12433359026908875}],"concepts":[{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.7882774472236633},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7496175765991211},{"id":"https://openalex.org/C2779804580","wikidata":"https://www.wikidata.org/wiki/Q102047","display_name":"Suffix","level":2,"score":0.6639175415039062},{"id":"https://openalex.org/C157486923","wikidata":"https://www.wikidata.org/wiki/Q1376436","display_name":"String (physics)","level":2,"score":0.6475629806518555},{"id":"https://openalex.org/C106131492","wikidata":"https://www.wikidata.org/wiki/Q3072260","display_name":"Filter (signal processing)","level":2,"score":0.6144357919692993},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.5657095313072205},{"id":"https://openalex.org/C173801870","wikidata":"https://www.wikidata.org/wiki/Q201413","display_name":"Heuristic","level":2,"score":0.5601382255554199},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5426881313323975},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.5179802179336548},{"id":"https://openalex.org/C2776760102","wikidata":"https://www.wikidata.org/wiki/Q5139990","display_name":"Code (set theory)","level":3,"score":0.5064793825149536},{"id":"https://openalex.org/C90559484","wikidata":"https://www.wikidata.org/wiki/Q778379","display_name":"Expression (computer science)","level":2,"score":0.4899281859397888},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.4451107084751129},{"id":"https://openalex.org/C121329065","wikidata":"https://www.wikidata.org/wiki/Q185612","display_name":"Regular expression","level":2,"score":0.43570151925086975},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.21937230229377747},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.1399960219860077},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.12785866856575012},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.12433359026908875},{"id":"https://openalex.org/C37914503","wikidata":"https://www.wikidata.org/wiki/Q156495","display_name":"Mathematical physics","level":1,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000191","qualifier_name":"economics","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000191","qualifier_name":"economics","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000191","qualifier_name":"economics","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btr560","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr560","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:21984769","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21984769","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:open-archive.highwire.org:bioinfo:27/24/3348","is_oa":false,"landing_page_url":"http://bioinformatics.oxfordjournals.org/cgi/content/short/27/24/3348","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:oai:pub.librecat.org:2401665","is_oa":false,"landing_page_url":"https://pub.uni-bielefeld.de/record/2401665","pdf_url":null,"source":{"id":"https://openalex.org/S4306401671","display_name":"PUB \u2013 Publications at Bielefeld University (Bielefeld University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I20121455","host_organization_name":"Bielefeld University","host_organization_lineage":["https://openalex.org/I20121455"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Hazelhurst S, Lipt\u00e1k Z. KABOOM! A new suffix-array based algorithm for clustering expression data. <em>Bioinformatics</em>. 2011;27(24):3348-3355.","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","score":0.47999998927116394,"display_name":"Industry, innovation and infrastructure"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":33,"referenced_works":["https://openalex.org/W603639406","https://openalex.org/W1501370139","https://openalex.org/W1514717985","https://openalex.org/W1647671624","https://openalex.org/W1968363797","https://openalex.org/W1976682045","https://openalex.org/W1992419399","https://openalex.org/W1993817276","https://openalex.org/W2002315107","https://openalex.org/W2023491987","https://openalex.org/W2028445324","https://openalex.org/W2035483212","https://openalex.org/W2043481183","https://openalex.org/W2048818637","https://openalex.org/W2054499745","https://openalex.org/W2063314407","https://openalex.org/W2098470358","https://openalex.org/W2101972919","https://openalex.org/W2109062349","https://openalex.org/W2117520899","https://openalex.org/W2129588061","https://openalex.org/W2141238531","https://openalex.org/W2154795971","https://openalex.org/W2158874082","https://openalex.org/W2161116447","https://openalex.org/W2164631357","https://openalex.org/W2166265186","https://openalex.org/W2596638263","https://openalex.org/W2914081640","https://openalex.org/W6633180349","https://openalex.org/W6636915900","https://openalex.org/W6679579046","https://openalex.org/W6783806376"],"related_works":["https://openalex.org/W2371678724","https://openalex.org/W4311055779","https://openalex.org/W2761558751","https://openalex.org/W3128574596","https://openalex.org/W1549877447","https://openalex.org/W3125261964","https://openalex.org/W2181888227","https://openalex.org/W2039468209","https://openalex.org/W2502219810","https://openalex.org/W3190489747"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":3}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}