{"id":"https://openalex.org/W2117163574","doi":"https://doi.org/10.1093/bioinformatics/btr482","title":"Fast and accurate prediction of protein side-chain conformations","display_name":"Fast and accurate prediction of protein side-chain conformations","publication_year":2011,"publication_date":"2011-08-27","ids":{"openalex":"https://openalex.org/W2117163574","doi":"https://doi.org/10.1093/bioinformatics/btr482","mag":"2117163574","pmid":"https://pubmed.ncbi.nlm.nih.gov/21873640"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btr482","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr482","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/20/2913/48874300/bioinformatics_27_20_2913.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/27/20/2913/48874300/bioinformatics_27_20_2913.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5108381763","display_name":"Shide Liang","orcid":null},"institutions":[{"id":"https://openalex.org/I114395901","display_name":"University of Nebraska\u2013Lincoln","ror":"https://ror.org/043mer456","country_code":"US","type":"education","lineage":["https://openalex.org/I114395901"]},{"id":"https://openalex.org/I184840846","display_name":"Virginia Commonwealth University","ror":"https://ror.org/02nkdxk79","country_code":"US","type":"education","lineage":["https://openalex.org/I184840846"]},{"id":"https://openalex.org/I98285908","display_name":"The University of Osaka","ror":"https://ror.org/035t8zc32","country_code":"JP","type":"education","lineage":["https://openalex.org/I98285908"]}],"countries":["JP","US"],"is_corresponding":false,"raw_author_name":"Shide Liang","raw_affiliation_strings":["1 Systems Immunology Lab, Immunology Frontier Research Center, Osaka University, Suita, Osaka 565-0871, Japan, 2Department of Radiation Oncology, Massey Cancer Center, Virginia Commonwealth University, Richmond, VA 23298 and 3School of Biological Sciences, Center for Plant Science and Innovation, University of Nebraska, Lincoln, NE 68588, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Systems Immunology Lab, Immunology Frontier Research Center, Osaka University, Suita, Osaka 565-0871, Japan, 2Department of Radiation Oncology, Massey Cancer Center, Virginia Commonwealth University, Richmond, VA 23298 and 3School of Biological Sciences, Center for Plant Science and Innovation, University of Nebraska, Lincoln, NE 68588, USA","institution_ids":["https://openalex.org/I114395901","https://openalex.org/I184840846","https://openalex.org/I98285908"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100705796","display_name":"Dandan Zheng","orcid":"https://orcid.org/0000-0003-2259-1633"},"institutions":[{"id":"https://openalex.org/I114395901","display_name":"University of Nebraska\u2013Lincoln","ror":"https://ror.org/043mer456","country_code":"US","type":"education","lineage":["https://openalex.org/I114395901"]},{"id":"https://openalex.org/I184840846","display_name":"Virginia Commonwealth University","ror":"https://ror.org/02nkdxk79","country_code":"US","type":"education","lineage":["https://openalex.org/I184840846"]},{"id":"https://openalex.org/I98285908","display_name":"The University of Osaka","ror":"https://ror.org/035t8zc32","country_code":"JP","type":"education","lineage":["https://openalex.org/I98285908"]}],"countries":["JP","US"],"is_corresponding":false,"raw_author_name":"Dandan Zheng","raw_affiliation_strings":["1 Systems Immunology Lab, Immunology Frontier Research Center, Osaka University, Suita, Osaka 565-0871, Japan, 2Department of Radiation Oncology, Massey Cancer Center, Virginia Commonwealth University, Richmond, VA 23298 and 3School of Biological Sciences, Center for Plant Science and Innovation, University of Nebraska, Lincoln, NE 68588, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Systems Immunology Lab, Immunology Frontier Research Center, Osaka University, Suita, Osaka 565-0871, Japan, 2Department of Radiation Oncology, Massey Cancer Center, Virginia Commonwealth University, Richmond, VA 23298 and 3School of Biological Sciences, Center for Plant Science and Innovation, University of Nebraska, Lincoln, NE 68588, USA","institution_ids":["https://openalex.org/I114395901","https://openalex.org/I184840846","https://openalex.org/I98285908"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100458161","display_name":"Chi Zhang","orcid":"https://orcid.org/0000-0002-1827-8137"},"institutions":[{"id":"https://openalex.org/I114395901","display_name":"University of Nebraska\u2013Lincoln","ror":"https://ror.org/043mer456","country_code":"US","type":"education","lineage":["https://openalex.org/I114395901"]},{"id":"https://openalex.org/I184840846","display_name":"Virginia Commonwealth University","ror":"https://ror.org/02nkdxk79","country_code":"US","type":"education","lineage":["https://openalex.org/I184840846"]},{"id":"https://openalex.org/I98285908","display_name":"The University of Osaka","ror":"https://ror.org/035t8zc32","country_code":"JP","type":"education","lineage":["https://openalex.org/I98285908"]}],"countries":["JP","US"],"is_corresponding":false,"raw_author_name":"Chi Zhang","raw_affiliation_strings":["1 Systems Immunology Lab, Immunology Frontier Research Center, Osaka University, Suita, Osaka 565-0871, Japan, 2Department of Radiation Oncology, Massey Cancer Center, Virginia Commonwealth University, Richmond, VA 23298 and 3School of Biological Sciences, Center for Plant Science and Innovation, University of Nebraska, Lincoln, NE 68588, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Systems Immunology Lab, Immunology Frontier Research Center, Osaka University, Suita, Osaka 565-0871, Japan, 2Department of Radiation Oncology, Massey Cancer Center, Virginia Commonwealth University, Richmond, VA 23298 and 3School of Biological Sciences, Center for Plant Science and Innovation, University of Nebraska, Lincoln, NE 68588, USA","institution_ids":["https://openalex.org/I114395901","https://openalex.org/I184840846","https://openalex.org/I98285908"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5003461562","display_name":"Daron M. Standley","orcid":"https://orcid.org/0000-0003-4078-0817"},"institutions":[{"id":"https://openalex.org/I114395901","display_name":"University of Nebraska\u2013Lincoln","ror":"https://ror.org/043mer456","country_code":"US","type":"education","lineage":["https://openalex.org/I114395901"]},{"id":"https://openalex.org/I184840846","display_name":"Virginia Commonwealth University","ror":"https://ror.org/02nkdxk79","country_code":"US","type":"education","lineage":["https://openalex.org/I184840846"]},{"id":"https://openalex.org/I98285908","display_name":"The University of Osaka","ror":"https://ror.org/035t8zc32","country_code":"JP","type":"education","lineage":["https://openalex.org/I98285908"]}],"countries":["JP","US"],"is_corresponding":true,"raw_author_name":"Daron M. Standley","raw_affiliation_strings":["1 Systems Immunology Lab, Immunology Frontier Research Center, Osaka University, Suita, Osaka 565-0871, Japan, 2Department of Radiation Oncology, Massey Cancer Center, Virginia Commonwealth University, Richmond, VA 23298 and 3School of Biological Sciences, Center for Plant Science and Innovation, University of Nebraska, Lincoln, NE 68588, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Systems Immunology Lab, Immunology Frontier Research Center, Osaka University, Suita, Osaka 565-0871, Japan, 2Department of Radiation Oncology, Massey Cancer Center, Virginia Commonwealth University, Richmond, VA 23298 and 3School of Biological Sciences, Center for Plant Science and Innovation, University of Nebraska, Lincoln, NE 68588, USA","institution_ids":["https://openalex.org/I114395901","https://openalex.org/I184840846","https://openalex.org/I98285908"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5003461562"],"corresponding_institution_ids":["https://openalex.org/I114395901","https://openalex.org/I184840846","https://openalex.org/I98285908"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.9732,"has_fulltext":true,"cited_by_count":61,"citation_normalized_percentile":{"value":0.74146424,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"27","issue":"20","first_page":"2913","last_page":"2914"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9725000262260437,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9725000262260437,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.0052999998442828655,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13326","display_name":"Biochemical and Structural Characterization","score":0.0038999998942017555,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/conformational-isomerism","display_name":"Conformational isomerism","score":0.7481956481933594},{"id":"https://openalex.org/keywords/side-chain","display_name":"Side chain","score":0.7322574853897095},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6119455695152283},{"id":"https://openalex.org/keywords/rotation","display_name":"Rotation (mathematics)","score":0.5335937738418579},{"id":"https://openalex.org/keywords/selection","display_name":"Selection (genetic algorithm)","score":0.4977321922779083},{"id":"https://openalex.org/keywords/chain","display_name":"Chain (unit)","score":0.4824165105819702},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.4796364903450012},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.468483567237854},{"id":"https://openalex.org/keywords/energy","display_name":"Energy (signal processing)","score":0.4474947154521942},{"id":"https://openalex.org/keywords/loop","display_name":"Loop (graph theory)","score":0.4347617030143738},{"id":"https://openalex.org/keywords/star","display_name":"Star (game theory)","score":0.4346857964992523},{"id":"https://openalex.org/keywords/computer-program","display_name":"Computer program","score":0.4251430034637451},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.20754972100257874},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.19804856181144714},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.19183620810508728},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.15900087356567383},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.1576518714427948},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.12857696413993835},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.10549771785736084},{"id":"https://openalex.org/keywords/astrophysics","display_name":"Astrophysics","score":0.09008005261421204},{"id":"https://openalex.org/keywords/molecule","display_name":"Molecule","score":0.08280569314956665}],"concepts":[{"id":"https://openalex.org/C18705241","wikidata":"https://www.wikidata.org/wiki/Q1128023","display_name":"Conformational isomerism","level":3,"score":0.7481956481933594},{"id":"https://openalex.org/C204921945","wikidata":"https://www.wikidata.org/wiki/Q899689","display_name":"Side chain","level":3,"score":0.7322574853897095},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6119455695152283},{"id":"https://openalex.org/C74050887","wikidata":"https://www.wikidata.org/wiki/Q848368","display_name":"Rotation (mathematics)","level":2,"score":0.5335937738418579},{"id":"https://openalex.org/C81917197","wikidata":"https://www.wikidata.org/wiki/Q628760","display_name":"Selection (genetic algorithm)","level":2,"score":0.4977321922779083},{"id":"https://openalex.org/C199185054","wikidata":"https://www.wikidata.org/wiki/Q552299","display_name":"Chain (unit)","level":2,"score":0.4824165105819702},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.4796364903450012},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.468483567237854},{"id":"https://openalex.org/C186370098","wikidata":"https://www.wikidata.org/wiki/Q442787","display_name":"Energy (signal processing)","level":2,"score":0.4474947154521942},{"id":"https://openalex.org/C184670325","wikidata":"https://www.wikidata.org/wiki/Q512604","display_name":"Loop (graph theory)","level":2,"score":0.4347617030143738},{"id":"https://openalex.org/C2780897414","wikidata":"https://www.wikidata.org/wiki/Q7600592","display_name":"Star (game theory)","level":2,"score":0.4346857964992523},{"id":"https://openalex.org/C2777362769","wikidata":"https://www.wikidata.org/wiki/Q40056","display_name":"Computer program","level":2,"score":0.4251430034637451},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.20754972100257874},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.19804856181144714},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.19183620810508728},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.15900087356567383},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.1576518714427948},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.12857696413993835},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.10549771785736084},{"id":"https://openalex.org/C44870925","wikidata":"https://www.wikidata.org/wiki/Q37547","display_name":"Astrophysics","level":1,"score":0.09008005261421204},{"id":"https://openalex.org/C32909587","wikidata":"https://www.wikidata.org/wiki/Q11369","display_name":"Molecule","level":2,"score":0.08280569314956665},{"id":"https://openalex.org/C521977710","wikidata":"https://www.wikidata.org/wiki/Q81163","display_name":"Polymer","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C1276947","wikidata":"https://www.wikidata.org/wiki/Q333","display_name":"Astronomy","level":1,"score":0.0},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btr482","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr482","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/20/2913/48874300/bioinformatics_27_20_2913.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:21873640","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21873640","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:europepmc.org:2192128","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3187653","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:open-archive.highwire.org:bioinfo:27/20/2913","is_oa":false,"landing_page_url":"http://bioinformatics.oxfordjournals.org/cgi/content/short/27/20/2913","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btr482","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr482","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/20/2913/48874300/bioinformatics_27_20_2913.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.8999999761581421,"id":"https://metadata.un.org/sdg/7","display_name":"Affordable and clean energy"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320334764","display_name":"Japan Society for the Promotion of Science","ror":"https://ror.org/00hhkn466"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2117163574.pdf","grobid_xml":"https://content.openalex.org/works/W2117163574.grobid-xml"},"referenced_works_count":10,"referenced_works":["https://openalex.org/W1970157506","https://openalex.org/W2015447696","https://openalex.org/W2083174933","https://openalex.org/W2106648157","https://openalex.org/W2140508442","https://openalex.org/W2141685906","https://openalex.org/W2152107372","https://openalex.org/W2154031461","https://openalex.org/W2156286349","https://openalex.org/W2168505829"],"related_works":["https://openalex.org/W2023036309","https://openalex.org/W1972863456","https://openalex.org/W2089371831","https://openalex.org/W2052399476","https://openalex.org/W2077273959","https://openalex.org/W2810163160","https://openalex.org/W2037964119","https://openalex.org/W2064314890","https://openalex.org/W2556222602","https://openalex.org/W4280529929"],"abstract_inverted_index":{"SUMMARY:":[0],"We":[1,61],"developed":[2,57],"a":[3,22],"fast":[4],"and":[5,21,47,93],"accurate":[6],"side-chain":[7],"modeling":[8],"program":[9,56],"[Optimized":[10],"Side":[11],"Chain":[12],"Atomic":[13],"eneRgy":[14],"(OSCAR)-star]":[15],"based":[16],"on":[17],"orientation-dependent":[18],"energy":[19,65],"functions":[20],"rigid":[23,76],"rotamer":[24],"model.":[25],"The":[26],"average":[27],"computing":[28],"time":[29],"was":[30],"18":[31],"s":[32],"per":[33],"protein":[34,81],"for":[35,45,50,80,85,100],"218":[36,95],"test":[37,96],"proteins":[38,97],"with":[39],"higher":[40],"prediction":[41],"accuracy":[42],"(1.1%":[43],"increase":[44,49],"\u03c7(1)":[46],"0.8%":[48],"\u03c7(1+2))":[51],"than":[52],"the":[53,64,72,94],"best":[54],"performing":[55],"by":[58],"other":[59],"groups.":[60],"show":[62],"that":[63],"functions,":[66],"which":[67],"were":[68],"calibrated":[69],"to":[70],"tolerate":[71],"discrete":[73],"errors":[74],"of":[75],"rotamers,":[77],"are":[78,98,110],"appropriate":[79],"loop":[82],"selection,":[83],"especially":[84],"decoys":[86],"without":[87],"extensive":[88],"structural":[89],"refinement.":[90],"AVAILABILITY:":[91],"OSCAR-star":[92],"available":[99,111],"download":[101],"at":[102,112],"http://sysimm.ifrec.osaka-u.ac.jp/OSCAR":[103],"CONTACT:":[104],"standley@ifrec.osaka-u.ac.jp":[105],"SUPPLEMENTARY":[106],"INFORMATION:":[107],"Supplementary":[108],"data":[109],"Bioinformatics":[113],"online.":[114]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":8},{"year":2022,"cited_by_count":8},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":6},{"year":2018,"cited_by_count":6},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":5},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":5},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":2}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}