{"id":"https://openalex.org/W2105811945","doi":"https://doi.org/10.1093/bioinformatics/btr481","title":"SPREAD: spatial phylogenetic reconstruction of evolutionary dynamics","display_name":"SPREAD: spatial phylogenetic reconstruction of evolutionary dynamics","publication_year":2011,"publication_date":"2011-09-11","ids":{"openalex":"https://openalex.org/W2105811945","doi":"https://doi.org/10.1093/bioinformatics/btr481","mag":"2105811945","pmid":"https://pubmed.ncbi.nlm.nih.gov/21911333"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btr481","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr481","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/20/2910/520484/btr481.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/27/20/2910/520484/btr481.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5075073766","display_name":"Filip Bielejec","orcid":null},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I24156275","display_name":"Rega Institute for Medical Research","ror":"https://ror.org/03w5j8p12","country_code":"BE","type":"facility","lineage":["https://openalex.org/I24156275"]},{"id":"https://openalex.org/I99464096","display_name":"KU Leuven","ror":"https://ror.org/05f950310","country_code":"BE","type":"education","lineage":["https://openalex.org/I99464096"]}],"countries":["BE","US"],"is_corresponding":true,"raw_author_name":"Filip Bielejec","raw_affiliation_strings":["1 Rega Institute for Medical Research, Clinical and Epidemiological Virology Section, Katholieke Universiteit Leuven, Leuven, Belgium, 2Institute of Evolutionary Biology, University of Edinburgh, Edinburgh, UK, 3Fogarty International Center, National Institutes of Health, Bethesda, MD, 4Department of Biomathematics, 5Department of Biostatistics and 6Department of Human Genetics, University of California, Los Angeles, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Rega Institute for Medical Research, Clinical and Epidemiological Virology Section, Katholieke Universiteit Leuven, Leuven, Belgium, 2Institute of Evolutionary Biology, University of Edinburgh, Edinburgh, UK, 3Fogarty International Center, National Institutes of Health, Bethesda, MD, 4Department of Biomathematics, 5Department of Biostatistics and 6Department of Human Genetics, University of California, Los Angeles, USA","institution_ids":["https://openalex.org/I1299303238","https://openalex.org/I24156275","https://openalex.org/I99464096"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083534383","display_name":"Andrew Rambaut","orcid":"https://orcid.org/0000-0003-4337-3707"},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I24156275","display_name":"Rega Institute for Medical Research","ror":"https://ror.org/03w5j8p12","country_code":"BE","type":"facility","lineage":["https://openalex.org/I24156275"]},{"id":"https://openalex.org/I99464096","display_name":"KU Leuven","ror":"https://ror.org/05f950310","country_code":"BE","type":"education","lineage":["https://openalex.org/I99464096"]}],"countries":["BE","US"],"is_corresponding":false,"raw_author_name":"Andrew Rambaut","raw_affiliation_strings":["1 Rega Institute for Medical Research, Clinical and Epidemiological Virology Section, Katholieke Universiteit Leuven, Leuven, Belgium, 2Institute of Evolutionary Biology, University of Edinburgh, Edinburgh, UK, 3Fogarty International Center, National Institutes of Health, Bethesda, MD, 4Department of Biomathematics, 5Department of Biostatistics and 6Department of Human Genetics, University of California, Los Angeles, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Rega Institute for Medical Research, Clinical and Epidemiological Virology Section, Katholieke Universiteit Leuven, Leuven, Belgium, 2Institute of Evolutionary Biology, University of Edinburgh, Edinburgh, UK, 3Fogarty International Center, National Institutes of Health, Bethesda, MD, 4Department of Biomathematics, 5Department of Biostatistics and 6Department of Human Genetics, University of California, Los Angeles, USA","institution_ids":["https://openalex.org/I1299303238","https://openalex.org/I24156275","https://openalex.org/I99464096"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039905606","display_name":"Marc A. Suchard","orcid":"https://orcid.org/0000-0001-9818-479X"},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I24156275","display_name":"Rega Institute for Medical Research","ror":"https://ror.org/03w5j8p12","country_code":"BE","type":"facility","lineage":["https://openalex.org/I24156275"]},{"id":"https://openalex.org/I99464096","display_name":"KU Leuven","ror":"https://ror.org/05f950310","country_code":"BE","type":"education","lineage":["https://openalex.org/I99464096"]}],"countries":["BE","US"],"is_corresponding":false,"raw_author_name":"Marc A. Suchard","raw_affiliation_strings":["1 Rega Institute for Medical Research, Clinical and Epidemiological Virology Section, Katholieke Universiteit Leuven, Leuven, Belgium, 2Institute of Evolutionary Biology, University of Edinburgh, Edinburgh, UK, 3Fogarty International Center, National Institutes of Health, Bethesda, MD, 4Department of Biomathematics, 5Department of Biostatistics and 6Department of Human Genetics, University of California, Los Angeles, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Rega Institute for Medical Research, Clinical and Epidemiological Virology Section, Katholieke Universiteit Leuven, Leuven, Belgium, 2Institute of Evolutionary Biology, University of Edinburgh, Edinburgh, UK, 3Fogarty International Center, National Institutes of Health, Bethesda, MD, 4Department of Biomathematics, 5Department of Biostatistics and 6Department of Human Genetics, University of California, Los Angeles, USA","institution_ids":["https://openalex.org/I1299303238","https://openalex.org/I24156275","https://openalex.org/I99464096"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5039280845","display_name":"Philippe Lemey","orcid":"https://orcid.org/0000-0003-2826-5353"},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I24156275","display_name":"Rega Institute for Medical Research","ror":"https://ror.org/03w5j8p12","country_code":"BE","type":"facility","lineage":["https://openalex.org/I24156275"]},{"id":"https://openalex.org/I99464096","display_name":"KU Leuven","ror":"https://ror.org/05f950310","country_code":"BE","type":"education","lineage":["https://openalex.org/I99464096"]}],"countries":["BE","US"],"is_corresponding":false,"raw_author_name":"Philippe Lemey","raw_affiliation_strings":["1 Rega Institute for Medical Research, Clinical and Epidemiological Virology Section, Katholieke Universiteit Leuven, Leuven, Belgium, 2Institute of Evolutionary Biology, University of Edinburgh, Edinburgh, UK, 3Fogarty International Center, National Institutes of Health, Bethesda, MD, 4Department of Biomathematics, 5Department of Biostatistics and 6Department of Human Genetics, University of California, Los Angeles, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Rega Institute for Medical Research, Clinical and Epidemiological Virology Section, Katholieke Universiteit Leuven, Leuven, Belgium, 2Institute of Evolutionary Biology, University of Edinburgh, Edinburgh, UK, 3Fogarty International Center, National Institutes of Health, Bethesda, MD, 4Department of Biomathematics, 5Department of Biostatistics and 6Department of Human Genetics, University of California, Los Angeles, USA","institution_ids":["https://openalex.org/I1299303238","https://openalex.org/I24156275","https://openalex.org/I99464096"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5075073766"],"corresponding_institution_ids":["https://openalex.org/I1299303238","https://openalex.org/I24156275","https://openalex.org/I99464096"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":45.9418,"has_fulltext":true,"cited_by_count":531,"citation_normalized_percentile":{"value":0.99922561,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"27","issue":"20","first_page":"2910","last_page":"2912"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11354","display_name":"Evolution and Paleontology Studies","score":0.2206999957561493,"subfield":{"id":"https://openalex.org/subfields/1911","display_name":"Paleontology"},"field":{"id":"https://openalex.org/fields/19","display_name":"Earth and Planetary Sciences"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11354","display_name":"Evolution and Paleontology Studies","score":0.2206999957561493,"subfield":{"id":"https://openalex.org/subfields/1911","display_name":"Paleontology"},"field":{"id":"https://openalex.org/fields/19","display_name":"Earth and Planetary Sciences"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12417","display_name":"Morphological variations and asymmetry","score":0.13830000162124634,"subfield":{"id":"https://openalex.org/subfields/2608","display_name":"Geometry and Topology"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11764","display_name":"Evolution and Genetic Dynamics","score":0.08829999715089798,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7089925408363342},{"id":"https://openalex.org/keywords/bayesian-probability","display_name":"Bayesian probability","score":0.5555663704872131},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.49349963665008545},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.4299708604812622},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.343655526638031},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.27627429366111755},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.10229060053825378}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7089925408363342},{"id":"https://openalex.org/C107673813","wikidata":"https://www.wikidata.org/wiki/Q812534","display_name":"Bayesian probability","level":2,"score":0.5555663704872131},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.49349963665008545},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.4299708604812622},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.343655526638031},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.27627429366111755},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.10229060053825378}],"mesh":[{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005075","descriptor_name":"Biological Evolution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005075","descriptor_name":"Biological Evolution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005075","descriptor_name":"Biological Evolution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005075","descriptor_name":"Biological Evolution","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058974","descriptor_name":"Phylogeography","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058974","descriptor_name":"Phylogeography","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058974","descriptor_name":"Phylogeography","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058974","descriptor_name":"Phylogeography","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":10,"locations":[{"id":"doi:10.1093/bioinformatics/btr481","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr481","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/20/2910/520484/btr481.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:21911333","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21911333","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:ark:/13030/qt1w154811","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:escholarship.org/ark:/13030/qt1w154811","is_oa":false,"landing_page_url":"https://escholarship.org/uc/item/1w154811","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics (Oxford, England), vol 27, iss 20","raw_type":"article"},{"id":"pmh:oai:europepmc.org:2192127","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3187652","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:lirias2repo.kuleuven.be:123456789/481329","is_oa":true,"landing_page_url":"https://lirias.kuleuven.be/bitstream/123456789/371883/4/Bielejec-SPREAD-Bioinformatics-2011.pdf","pdf_url":null,"source":{"id":"https://openalex.org/S7407055369","display_name":"Lirias","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, vol. 27 (20), (2910-2912)","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:open-archive.highwire.org:bioinfo:27/20/2910","is_oa":false,"landing_page_url":"http://bioinformatics.oxfordjournals.org/cgi/content/short/27/20/2910","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:oai:pure.ed.ac.uk:ec_fundedresources/7c5eb6c3-0342-4ed9-9b10-4d44c48ec975","is_oa":true,"landing_page_url":"http://hdl.handle.net/20.500.11820/7c5eb6c3-0342-4ed9-9b10-4d44c48ec975","pdf_url":null,"source":{"id":"https://openalex.org/S4306400321","display_name":"Edinburgh Research Explorer (University of Edinburgh)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I98677209","host_organization_name":"University of Edinburgh","host_organization_lineage":["https://openalex.org/I98677209"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":""},{"id":"pmh:oai:pure.ed.ac.uk:openaire/7c5eb6c3-0342-4ed9-9b10-4d44c48ec975","is_oa":true,"landing_page_url":"https://hdl.handle.net/20.500.11820/7c5eb6c3-0342-4ed9-9b10-4d44c48ec975","pdf_url":null,"source":{"id":"https://openalex.org/S4306400321","display_name":"Edinburgh Research Explorer (University of Edinburgh)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I98677209","host_organization_name":"University of Edinburgh","host_organization_lineage":["https://openalex.org/I98677209"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bielejec, F, Rambaut, A, Suchard, M A & Lemey, P 2011, 'SPREAD: spatial phylogenetic reconstruction of evolutionary dynamics', Bioinformatics, vol. 27, no. 20, pp. 2910-2912. https://doi.org/10.1093/bioinformatics/btr481","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:pure.ed.ac.uk:publications/7c5eb6c3-0342-4ed9-9b10-4d44c48ec975","is_oa":true,"landing_page_url":"https://www.research.ed.ac.uk/en/publications/7c5eb6c3-0342-4ed9-9b10-4d44c48ec975","pdf_url":null,"source":{"id":"https://openalex.org/S4306400321","display_name":"Edinburgh Research Explorer (University of Edinburgh)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I98677209","host_organization_name":"University of Edinburgh","host_organization_lineage":["https://openalex.org/I98677209"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bielejec, F, Rambaut, A, Suchard, M A & Lemey, P 2011, 'SPREAD: spatial phylogenetic reconstruction of evolutionary dynamics', Bioinformatics, vol. 27, no. 20, pp. 2910-2912. https://doi.org/10.1093/bioinformatics/btr481","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btr481","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr481","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/20/2910/520484/btr481.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2229575356","display_name":null,"funder_award_id":"-0423641","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G2391278426","display_name":null,"funder_award_id":"NSF EF-0423641","funder_id":"https://openalex.org/F4320309855","funder_display_name":"National Evolutionary Synthesis Center"},{"id":"https://openalex.org/G2610688614","display_name":null,"funder_award_id":"0423641","funder_id":"https://openalex.org/F4320337401","funder_display_name":"Division of Emerging Frontiers"},{"id":"https://openalex.org/G2973790809","display_name":null,"funder_award_id":"FP7/2007-2013","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3758405673","display_name":null,"funder_award_id":"GM086887","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4104599821","display_name":null,"funder_award_id":"FP7/2007-2013","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G416021933","display_name":null,"funder_award_id":"R01 GM086887","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G4582215561","display_name":null,"funder_award_id":"EF-0423641","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G5968137333","display_name":null,"funder_award_id":"EF-0423641","funder_id":"https://openalex.org/F4320337401","funder_display_name":"Division of Emerging Frontiers"},{"id":"https://openalex.org/G6884266392","display_name":null,"funder_award_id":"EF-0423641","funder_id":"https://openalex.org/F4320309855","funder_display_name":"National Evolutionary Synthesis Center"},{"id":"https://openalex.org/G6887627516","display_name":"Centre for Immunity, Infection and Evolution.","funder_award_id":"095831","funder_id":"https://openalex.org/F4320311904","funder_display_name":"Wellcome Trust"},{"id":"https://openalex.org/G7382415512","display_name":"CSBE: A Place for Evolutionary Synthesis in North Carolina's Research Triangle","funder_award_id":"0423641","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G950618099","display_name":null,"funder_award_id":"R01 HG006139","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320309855","display_name":"National Evolutionary Synthesis Center","ror":"https://ror.org/001ykb961"},{"id":"https://openalex.org/F4320311904","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337348","display_name":"National Human Genome Research Institute","ror":"https://ror.org/00baak391"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"},{"id":"https://openalex.org/F4320337401","display_name":"Division of Emerging Frontiers","ror":"https://ror.org/01tnvpc68"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2105811945.pdf","grobid_xml":"https://content.openalex.org/works/W2105811945.grobid-xml"},"referenced_works_count":9,"referenced_works":["https://openalex.org/W1966380925","https://openalex.org/W1973925561","https://openalex.org/W2088267428","https://openalex.org/W2093464515","https://openalex.org/W2110835349","https://openalex.org/W2136485386","https://openalex.org/W2139166200","https://openalex.org/W2168912795","https://openalex.org/W2169702034"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W2382290278","https://openalex.org/W2350741829","https://openalex.org/W2530322880","https://openalex.org/W1596801655","https://openalex.org/W2359140296"],"abstract_inverted_index":{"SUMMARY:":[0],"SPREAD":[1,54,81,114],"is":[2,115,126],"a":[3,130],"user-friendly,":[4],"cross-platform":[5],"application":[6],"to":[7,35,59,87],"analyze":[8],"and":[9,25,29,95,99,104,122],"visualize":[10],"Bayesian":[11,75],"phylogeographic":[12],"reconstructions":[13],"incorporating":[14],"spatial-temporal":[15],"diffusion.":[16],"The":[17],"software":[18],"maps":[19],"phylogenies":[20,94],"annotated":[21],"with":[22],"both":[23],"discrete":[24,71],"continuous":[26],"spatial":[27,44,97,111],"information":[28],"can":[30],"export":[31],"high-dimensional":[32],"posterior":[33,91],"summaries":[34,107],"keyhole":[36],"markup":[37],"language":[38],"(KML)":[39],"for":[40,63,108],"animation":[41],"of":[42,65,70,84,93],"the":[43,61,109,118],"diffusion":[45,67,98],"through":[46],"time":[47],"in":[48],"virtual":[49],"globe":[50],"software.":[51],"In":[52],"addition,":[53],"implements":[55],"Bayes":[56],"factor":[57],"calculation":[58],"evaluate":[60],"support":[62],"hypotheses":[64],"historical":[66],"among":[68],"pairs":[69],"locations":[72],"based":[73],"on":[74],"stochastic":[76],"search":[77],"variable":[78],"selection":[79],"estimates.":[80],"takes":[82],"advantage":[83],"multicore":[85],"architectures":[86],"process":[88],"large":[89],"joint":[90],"distributions":[92],"their":[96],"produces":[100],"visualizations":[101],"as":[102,129],"compelling":[103],"interpretable":[105],"statistical":[106],"different":[110],"projections.":[112],"AVAILABILITY:":[113],"licensed":[116],"under":[117],"GNU":[119],"Lesser":[120],"GPL":[121],"its":[123],"source":[124],"code":[125],"freely":[127],"available":[128],"GitHub":[131],"repository:":[132],"https://github.com/phylogeography/SPREAD":[133],"CONTACT:":[134],"filip.bielejec@rega.kuleuven.be.":[135]},"counts_by_year":[{"year":2026,"cited_by_count":12},{"year":2025,"cited_by_count":18},{"year":2024,"cited_by_count":26},{"year":2023,"cited_by_count":27},{"year":2022,"cited_by_count":36},{"year":2021,"cited_by_count":31},{"year":2020,"cited_by_count":33},{"year":2019,"cited_by_count":41},{"year":2018,"cited_by_count":33},{"year":2017,"cited_by_count":53},{"year":2016,"cited_by_count":60},{"year":2015,"cited_by_count":53},{"year":2014,"cited_by_count":38},{"year":2013,"cited_by_count":46},{"year":2012,"cited_by_count":19}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}
