{"id":"https://openalex.org/W1993934436","doi":"https://doi.org/10.1093/bioinformatics/btr433","title":"Dasty3, a WEB framework for DAS","display_name":"Dasty3, a WEB framework for DAS","publication_year":2011,"publication_date":"2011-07-28","ids":{"openalex":"https://openalex.org/W1993934436","doi":"https://doi.org/10.1093/bioinformatics/btr433","mag":"1993934436","pmid":"https://pubmed.ncbi.nlm.nih.gov/21798964"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btr433","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr433","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/18/2616/438532/btr433.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/27/18/2616/438532/btr433.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5108501528","display_name":"Jos\u00e9 Villaveces","orcid":null},"institutions":[{"id":"https://openalex.org/I9617848","display_name":"Universitat Polit\u00e8cnica de Catalunya","ror":"https://ror.org/03mb6wj31","country_code":"ES","type":"education","lineage":["https://openalex.org/I9617848"]},{"id":"https://openalex.org/I157614274","display_name":"University of Cape Town","ror":"https://ror.org/03p74gp79","country_code":"ZA","type":"education","lineage":["https://openalex.org/I157614274"]},{"id":"https://openalex.org/I79620101","display_name":"University of Arkansas for Medical Sciences","ror":"https://ror.org/00xcryt71","country_code":"US","type":"education","lineage":["https://openalex.org/I79620101"]},{"id":"https://openalex.org/I87048295","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08","country_code":"GB","type":"funder","lineage":["https://openalex.org/I87048295"]},{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["ES","GB","US","ZA"],"is_corresponding":true,"raw_author_name":"Jose M. Villaveces","raw_affiliation_strings":["1 Protein and Nucleotide Data Group, EMBL Outstation European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK, 2Computational Biology Group, Department of Clinical Laboratory Sciences, University of Cape Town, Cape Town, South Africa, 3Software Department, UPC\u2212BarcelonaTech, Barcelona, Spain and 4Biomedical Informatics department, University of Arkansas for Medical Sciences, Little Rock, AR 72205, USA"],"affiliations":[{"raw_affiliation_string":"1 Protein and Nucleotide Data Group, EMBL Outstation European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK, 2Computational Biology Group, Department of Clinical Laboratory Sciences, University of Cape Town, Cape Town, South Africa, 3Software Department, UPC\u2212BarcelonaTech, Barcelona, Spain and 4Biomedical Informatics department, University of Arkansas for Medical Sciences, Little Rock, AR 72205, USA","institution_ids":["https://openalex.org/I157614274","https://openalex.org/I79620101","https://openalex.org/I9617848","https://openalex.org/I87048295","https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056920611","display_name":"Rafael C. Jim\u00e9nez","orcid":"https://orcid.org/0000-0001-5404-7670"},"institutions":[{"id":"https://openalex.org/I9617848","display_name":"Universitat Polit\u00e8cnica de Catalunya","ror":"https://ror.org/03mb6wj31","country_code":"ES","type":"education","lineage":["https://openalex.org/I9617848"]},{"id":"https://openalex.org/I157614274","display_name":"University of Cape Town","ror":"https://ror.org/03p74gp79","country_code":"ZA","type":"education","lineage":["https://openalex.org/I157614274"]},{"id":"https://openalex.org/I79620101","display_name":"University of Arkansas for Medical Sciences","ror":"https://ror.org/00xcryt71","country_code":"US","type":"education","lineage":["https://openalex.org/I79620101"]},{"id":"https://openalex.org/I87048295","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08","country_code":"GB","type":"funder","lineage":["https://openalex.org/I87048295"]},{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["ES","GB","US","ZA"],"is_corresponding":false,"raw_author_name":"Rafael C. Jimenez","raw_affiliation_strings":["1 Protein and Nucleotide Data Group, EMBL Outstation European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK, 2Computational Biology Group, Department of Clinical Laboratory Sciences, University of Cape Town, Cape Town, South Africa, 3Software Department, UPC\u2212BarcelonaTech, Barcelona, Spain and 4Biomedical Informatics department, University of Arkansas for Medical Sciences, Little Rock, AR 72205, USA"],"affiliations":[{"raw_affiliation_string":"1 Protein and Nucleotide Data Group, EMBL Outstation European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK, 2Computational Biology Group, Department of Clinical Laboratory Sciences, University of Cape Town, Cape Town, South Africa, 3Software Department, UPC\u2212BarcelonaTech, Barcelona, Spain and 4Biomedical Informatics department, University of Arkansas for Medical Sciences, Little Rock, AR 72205, USA","institution_ids":["https://openalex.org/I157614274","https://openalex.org/I79620101","https://openalex.org/I9617848","https://openalex.org/I87048295","https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108009730","display_name":"Leyla Garc\u00eda","orcid":"https://orcid.org/0000-0002-1093-8209"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I87048295","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08","country_code":"GB","type":"funder","lineage":["https://openalex.org/I87048295"]},{"id":"https://openalex.org/I9617848","display_name":"Universitat Polit\u00e8cnica de Catalunya","ror":"https://ror.org/03mb6wj31","country_code":"ES","type":"education","lineage":["https://openalex.org/I9617848"]},{"id":"https://openalex.org/I79620101","display_name":"University of Arkansas for Medical Sciences","ror":"https://ror.org/00xcryt71","country_code":"US","type":"education","lineage":["https://openalex.org/I79620101"]},{"id":"https://openalex.org/I157614274","display_name":"University of Cape Town","ror":"https://ror.org/03p74gp79","country_code":"ZA","type":"education","lineage":["https://openalex.org/I157614274"]}],"countries":["ES","GB","US","ZA"],"is_corresponding":false,"raw_author_name":"Leyla J. Garcia","raw_affiliation_strings":["1 Protein and Nucleotide Data Group, EMBL Outstation European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK, 2Computational Biology Group, Department of Clinical Laboratory Sciences, University of Cape Town, Cape Town, South Africa, 3Software Department, UPC\u2212BarcelonaTech, Barcelona, Spain and 4Biomedical Informatics department, University of Arkansas for Medical Sciences, Little Rock, AR 72205, USA"],"affiliations":[{"raw_affiliation_string":"1 Protein and Nucleotide Data Group, EMBL Outstation European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK, 2Computational Biology Group, Department of Clinical Laboratory Sciences, University of Cape Town, Cape Town, South Africa, 3Software Department, UPC\u2212BarcelonaTech, Barcelona, Spain and 4Biomedical Informatics department, University of Arkansas for Medical Sciences, Little Rock, AR 72205, USA","institution_ids":["https://openalex.org/I157614274","https://openalex.org/I79620101","https://openalex.org/I9617848","https://openalex.org/I87048295","https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019704465","display_name":"Gustavo A Salazar","orcid":"https://orcid.org/0000-0001-9208-4966"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I79620101","display_name":"University of Arkansas for Medical Sciences","ror":"https://ror.org/00xcryt71","country_code":"US","type":"education","lineage":["https://openalex.org/I79620101"]},{"id":"https://openalex.org/I9617848","display_name":"Universitat Polit\u00e8cnica de Catalunya","ror":"https://ror.org/03mb6wj31","country_code":"ES","type":"education","lineage":["https://openalex.org/I9617848"]},{"id":"https://openalex.org/I87048295","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08","country_code":"GB","type":"funder","lineage":["https://openalex.org/I87048295"]},{"id":"https://openalex.org/I157614274","display_name":"University of Cape Town","ror":"https://ror.org/03p74gp79","country_code":"ZA","type":"education","lineage":["https://openalex.org/I157614274"]}],"countries":["ES","GB","US","ZA"],"is_corresponding":false,"raw_author_name":"Gustavo A. Salazar","raw_affiliation_strings":["1 Protein and Nucleotide Data Group, EMBL Outstation European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK, 2Computational Biology Group, Department of Clinical Laboratory Sciences, University of Cape Town, Cape Town, South Africa, 3Software Department, UPC\u2212BarcelonaTech, Barcelona, Spain and 4Biomedical Informatics department, University of Arkansas for Medical Sciences, Little Rock, AR 72205, USA"],"affiliations":[{"raw_affiliation_string":"1 Protein and Nucleotide Data Group, EMBL Outstation European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK, 2Computational Biology Group, Department of Clinical Laboratory Sciences, University of Cape Town, Cape Town, South Africa, 3Software Department, UPC\u2212BarcelonaTech, Barcelona, Spain and 4Biomedical Informatics department, University of Arkansas for Medical Sciences, Little Rock, AR 72205, USA","institution_ids":["https://openalex.org/I157614274","https://openalex.org/I79620101","https://openalex.org/I9617848","https://openalex.org/I87048295","https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046399679","display_name":"Bernat Gel","orcid":"https://orcid.org/0000-0001-8878-349X"},"institutions":[{"id":"https://openalex.org/I157614274","display_name":"University of Cape Town","ror":"https://ror.org/03p74gp79","country_code":"ZA","type":"education","lineage":["https://openalex.org/I157614274"]},{"id":"https://openalex.org/I9617848","display_name":"Universitat Polit\u00e8cnica de Catalunya","ror":"https://ror.org/03mb6wj31","country_code":"ES","type":"education","lineage":["https://openalex.org/I9617848"]},{"id":"https://openalex.org/I87048295","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08","country_code":"GB","type":"funder","lineage":["https://openalex.org/I87048295"]},{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I79620101","display_name":"University of Arkansas for Medical Sciences","ror":"https://ror.org/00xcryt71","country_code":"US","type":"education","lineage":["https://openalex.org/I79620101"]}],"countries":["ES","GB","US","ZA"],"is_corresponding":false,"raw_author_name":"Bernat Gel","raw_affiliation_strings":["1 Protein and Nucleotide Data Group, EMBL Outstation European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK, 2Computational Biology Group, Department of Clinical Laboratory Sciences, University of Cape Town, Cape Town, South Africa, 3Software Department, UPC\u2212BarcelonaTech, Barcelona, Spain and 4Biomedical Informatics department, University of Arkansas for Medical Sciences, Little Rock, AR 72205, USA"],"affiliations":[{"raw_affiliation_string":"1 Protein and Nucleotide Data Group, EMBL Outstation European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK, 2Computational Biology Group, Department of Clinical Laboratory Sciences, University of Cape Town, Cape Town, South Africa, 3Software Department, UPC\u2212BarcelonaTech, Barcelona, Spain and 4Biomedical Informatics department, University of Arkansas for Medical Sciences, Little Rock, AR 72205, USA","institution_ids":["https://openalex.org/I157614274","https://openalex.org/I79620101","https://openalex.org/I9617848","https://openalex.org/I87048295","https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080377820","display_name":"Nicola Mulder","orcid":"https://orcid.org/0000-0003-4905-0941"},"institutions":[{"id":"https://openalex.org/I79620101","display_name":"University of Arkansas for Medical Sciences","ror":"https://ror.org/00xcryt71","country_code":"US","type":"education","lineage":["https://openalex.org/I79620101"]},{"id":"https://openalex.org/I87048295","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08","country_code":"GB","type":"funder","lineage":["https://openalex.org/I87048295"]},{"id":"https://openalex.org/I9617848","display_name":"Universitat Polit\u00e8cnica de Catalunya","ror":"https://ror.org/03mb6wj31","country_code":"ES","type":"education","lineage":["https://openalex.org/I9617848"]},{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I157614274","display_name":"University of Cape Town","ror":"https://ror.org/03p74gp79","country_code":"ZA","type":"education","lineage":["https://openalex.org/I157614274"]}],"countries":["ES","GB","US","ZA"],"is_corresponding":false,"raw_author_name":"Nicola Mulder","raw_affiliation_strings":["1 Protein and Nucleotide Data Group, EMBL Outstation European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK, 2Computational Biology Group, Department of Clinical Laboratory Sciences, University of Cape Town, Cape Town, South Africa, 3Software Department, UPC\u2212BarcelonaTech, Barcelona, Spain and 4Biomedical Informatics department, University of Arkansas for Medical Sciences, Little Rock, AR 72205, USA"],"affiliations":[{"raw_affiliation_string":"1 Protein and Nucleotide Data Group, EMBL Outstation European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK, 2Computational Biology Group, Department of Clinical Laboratory Sciences, University of Cape Town, Cape Town, South Africa, 3Software Department, UPC\u2212BarcelonaTech, Barcelona, Spain and 4Biomedical Informatics department, University of Arkansas for Medical Sciences, Little Rock, AR 72205, USA","institution_ids":["https://openalex.org/I157614274","https://openalex.org/I79620101","https://openalex.org/I9617848","https://openalex.org/I87048295","https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071535801","display_name":"Mar\u00eda Martin","orcid":"https://orcid.org/0000-0001-5454-2815"},"institutions":[{"id":"https://openalex.org/I87048295","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08","country_code":"GB","type":"funder","lineage":["https://openalex.org/I87048295"]},{"id":"https://openalex.org/I157614274","display_name":"University of Cape Town","ror":"https://ror.org/03p74gp79","country_code":"ZA","type":"education","lineage":["https://openalex.org/I157614274"]},{"id":"https://openalex.org/I79620101","display_name":"University of Arkansas for Medical Sciences","ror":"https://ror.org/00xcryt71","country_code":"US","type":"education","lineage":["https://openalex.org/I79620101"]},{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I9617848","display_name":"Universitat Polit\u00e8cnica de Catalunya","ror":"https://ror.org/03mb6wj31","country_code":"ES","type":"education","lineage":["https://openalex.org/I9617848"]}],"countries":["ES","GB","US","ZA"],"is_corresponding":false,"raw_author_name":"Maria Martin","raw_affiliation_strings":["1 Protein and Nucleotide Data Group, EMBL Outstation European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK, 2Computational Biology Group, Department of Clinical Laboratory Sciences, University of Cape Town, Cape Town, South Africa, 3Software Department, UPC\u2212BarcelonaTech, Barcelona, Spain and 4Biomedical Informatics department, University of Arkansas for Medical Sciences, Little Rock, AR 72205, USA"],"affiliations":[{"raw_affiliation_string":"1 Protein and Nucleotide Data Group, EMBL Outstation European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK, 2Computational Biology Group, Department of Clinical Laboratory Sciences, University of Cape Town, Cape Town, South Africa, 3Software Department, UPC\u2212BarcelonaTech, Barcelona, Spain and 4Biomedical Informatics department, University of Arkansas for Medical Sciences, Little Rock, AR 72205, USA","institution_ids":["https://openalex.org/I157614274","https://openalex.org/I79620101","https://openalex.org/I9617848","https://openalex.org/I87048295","https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023349079","display_name":"Alexander Garc\u00eda","orcid":"https://orcid.org/0000-0003-1238-2539"},"institutions":[{"id":"https://openalex.org/I87048295","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08","country_code":"GB","type":"funder","lineage":["https://openalex.org/I87048295"]},{"id":"https://openalex.org/I9617848","display_name":"Universitat Polit\u00e8cnica de Catalunya","ror":"https://ror.org/03mb6wj31","country_code":"ES","type":"education","lineage":["https://openalex.org/I9617848"]},{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I79620101","display_name":"University of Arkansas for Medical Sciences","ror":"https://ror.org/00xcryt71","country_code":"US","type":"education","lineage":["https://openalex.org/I79620101"]},{"id":"https://openalex.org/I157614274","display_name":"University of Cape Town","ror":"https://ror.org/03p74gp79","country_code":"ZA","type":"education","lineage":["https://openalex.org/I157614274"]}],"countries":["ES","GB","US","ZA"],"is_corresponding":false,"raw_author_name":"Alexander Garcia","raw_affiliation_strings":["1 Protein and Nucleotide Data Group, EMBL Outstation European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK, 2Computational Biology Group, Department of Clinical Laboratory Sciences, University of Cape Town, Cape Town, South Africa, 3Software Department, UPC\u2212BarcelonaTech, Barcelona, Spain and 4Biomedical Informatics department, University of Arkansas for Medical Sciences, Little Rock, AR 72205, USA"],"affiliations":[{"raw_affiliation_string":"1 Protein and Nucleotide Data Group, EMBL Outstation European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK, 2Computational Biology Group, Department of Clinical Laboratory Sciences, University of Cape Town, Cape Town, South Africa, 3Software Department, UPC\u2212BarcelonaTech, Barcelona, Spain and 4Biomedical Informatics department, University of Arkansas for Medical Sciences, Little Rock, AR 72205, USA","institution_ids":["https://openalex.org/I157614274","https://openalex.org/I79620101","https://openalex.org/I9617848","https://openalex.org/I87048295","https://openalex.org/I1303153112"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5066783652","display_name":"Henning Hermjakob","orcid":"https://orcid.org/0000-0001-8479-0262"},"institutions":[{"id":"https://openalex.org/I87048295","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08","country_code":"GB","type":"funder","lineage":["https://openalex.org/I87048295"]},{"id":"https://openalex.org/I9617848","display_name":"Universitat Polit\u00e8cnica de Catalunya","ror":"https://ror.org/03mb6wj31","country_code":"ES","type":"education","lineage":["https://openalex.org/I9617848"]},{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I157614274","display_name":"University of Cape Town","ror":"https://ror.org/03p74gp79","country_code":"ZA","type":"education","lineage":["https://openalex.org/I157614274"]},{"id":"https://openalex.org/I79620101","display_name":"University of Arkansas for Medical Sciences","ror":"https://ror.org/00xcryt71","country_code":"US","type":"education","lineage":["https://openalex.org/I79620101"]}],"countries":["ES","GB","US","ZA"],"is_corresponding":false,"raw_author_name":"Henning Hermjakob","raw_affiliation_strings":["1 Protein and Nucleotide Data Group, EMBL Outstation European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK, 2Computational Biology Group, Department of Clinical Laboratory Sciences, University of Cape Town, Cape Town, South Africa, 3Software Department, UPC\u2212BarcelonaTech, Barcelona, Spain and 4Biomedical Informatics department, University of Arkansas for Medical Sciences, Little Rock, AR 72205, USA"],"affiliations":[{"raw_affiliation_string":"1 Protein and Nucleotide Data Group, EMBL Outstation European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK, 2Computational Biology Group, Department of Clinical Laboratory Sciences, University of Cape Town, Cape Town, South Africa, 3Software Department, UPC\u2212BarcelonaTech, Barcelona, Spain and 4Biomedical Informatics department, University of Arkansas for Medical Sciences, Little Rock, AR 72205, USA","institution_ids":["https://openalex.org/I157614274","https://openalex.org/I79620101","https://openalex.org/I9617848","https://openalex.org/I87048295","https://openalex.org/I1303153112"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5108501528"],"corresponding_institution_ids":["https://openalex.org/I1303153112","https://openalex.org/I157614274","https://openalex.org/I79620101","https://openalex.org/I87048295","https://openalex.org/I9617848"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":1.7342,"has_fulltext":true,"cited_by_count":15,"citation_normalized_percentile":{"value":0.83560596,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"27","issue":"18","first_page":"2616","last_page":"2617"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9776999950408936,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9776999950408936,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9746999740600586,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9667999744415283,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8058857917785645},{"id":"https://openalex.org/keywords/documentation","display_name":"Documentation","score":0.7854045629501343},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.7089722752571106},{"id":"https://openalex.org/keywords/license","display_name":"License","score":0.6976097226142883},{"id":"https://openalex.org/keywords/open-source","display_name":"Open source","score":0.6833759546279907},{"id":"https://openalex.org/keywords/application-programming-interface","display_name":"Application programming interface","score":0.6828930974006653},{"id":"https://openalex.org/keywords/mit-license","display_name":"MIT License","score":0.6659661531448364},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.645448625087738},{"id":"https://openalex.org/keywords/protocol","display_name":"Protocol (science)","score":0.6165677309036255},{"id":"https://openalex.org/keywords/web-application","display_name":"Web application","score":0.5634164214134216},{"id":"https://openalex.org/keywords/extensibility","display_name":"Extensibility","score":0.557266354560852},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.5252510905265808},{"id":"https://openalex.org/keywords/code","display_name":"Code (set theory)","score":0.45256665349006653},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.3779311776161194},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.357136070728302},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3385615348815918},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.2833760976791382},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.2041921615600586},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.09097477793693542}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8058857917785645},{"id":"https://openalex.org/C56666940","wikidata":"https://www.wikidata.org/wiki/Q788790","display_name":"Documentation","level":2,"score":0.7854045629501343},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.7089722752571106},{"id":"https://openalex.org/C2780560020","wikidata":"https://www.wikidata.org/wiki/Q79719","display_name":"License","level":2,"score":0.6976097226142883},{"id":"https://openalex.org/C3018397939","wikidata":"https://www.wikidata.org/wiki/Q3644502","display_name":"Open source","level":3,"score":0.6833759546279907},{"id":"https://openalex.org/C99613125","wikidata":"https://www.wikidata.org/wiki/Q165194","display_name":"Application programming interface","level":2,"score":0.6828930974006653},{"id":"https://openalex.org/C174183944","wikidata":"https://www.wikidata.org/wiki/Q334661","display_name":"MIT License","level":3,"score":0.6659661531448364},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.645448625087738},{"id":"https://openalex.org/C2780385302","wikidata":"https://www.wikidata.org/wiki/Q367158","display_name":"Protocol (science)","level":3,"score":0.6165677309036255},{"id":"https://openalex.org/C118643609","wikidata":"https://www.wikidata.org/wiki/Q189210","display_name":"Web application","level":2,"score":0.5634164214134216},{"id":"https://openalex.org/C32833848","wikidata":"https://www.wikidata.org/wiki/Q4115054","display_name":"Extensibility","level":2,"score":0.557266354560852},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.5252510905265808},{"id":"https://openalex.org/C2776760102","wikidata":"https://www.wikidata.org/wiki/Q5139990","display_name":"Code (set theory)","level":3,"score":0.45256665349006653},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.3779311776161194},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.357136070728302},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3385615348815918},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.2833760976791382},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.2041921615600586},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.09097477793693542},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0},{"id":"https://openalex.org/C204787440","wikidata":"https://www.wikidata.org/wiki/Q188504","display_name":"Alternative medicine","level":2,"score":0.0},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D012042","descriptor_name":"Registries","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012042","descriptor_name":"Registries","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012042","descriptor_name":"Registries","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/btr433","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr433","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/18/2616/438532/btr433.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:21798964","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21798964","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.955.2140","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.955.2140","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://bioinformatics.oxfordjournals.org/content/early/2011/07/27/bioinformatics.btr433.full.pdf","raw_type":"text"},{"id":"pmh:oai:europepmc.org:2174533","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3167052","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:open-archive.highwire.org:bioinfo:27/18/2616","is_oa":false,"landing_page_url":"http://bioinformatics.oxfordjournals.org/cgi/content/short/27/18/2616","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btr433","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr433","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/18/2616/438532/btr433.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/17","display_name":"Partnerships for the goals","score":0.4099999964237213}],"awards":[{"id":"https://openalex.org/G1346408566","display_name":null,"funder_award_id":"HEALTH","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G4147323175","display_name":"Probing Europe\u2019s Undiscovered Genome: A Metagenomics Approach to Find Unique Enzymes for the Biofuel and Bioprocessing Industries","funder_award_id":"268201","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G6519275499","display_name":null,"funder_award_id":"HHSN268201000035C","funder_id":"https://openalex.org/F4320337338","funder_display_name":"National Heart, Lung, and Blood Institute"},{"id":"https://openalex.org/G8064196376","display_name":null,"funder_award_id":"HHSN2682010000","funder_id":"https://openalex.org/F4320337338","funder_display_name":"National Heart, Lung, and Blood Institute"},{"id":"https://openalex.org/G8071364432","display_name":"Apoptosis systems biology applied to cancer and AIDS. An integrated approach of experimental biology, data mining, mathematical modelling, biostatistics, systems engineering and molecular medicine","funder_award_id":"200767","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320337338","display_name":"National Heart, Lung, and Blood Institute","ror":"https://ror.org/012pb6c26"},{"id":"https://openalex.org/F4320338377","display_name":"FP7 Health","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1993934436.pdf","grobid_xml":"https://content.openalex.org/works/W1993934436.grobid-xml"},"referenced_works_count":7,"referenced_works":["https://openalex.org/W1980160222","https://openalex.org/W1998671175","https://openalex.org/W2088911276","https://openalex.org/W2105644689","https://openalex.org/W2113535342","https://openalex.org/W2154519319","https://openalex.org/W2164940334"],"related_works":["https://openalex.org/W4309247532","https://openalex.org/W632256878","https://openalex.org/W4211197663","https://openalex.org/W2491403535","https://openalex.org/W2479811461","https://openalex.org/W2113128227","https://openalex.org/W3096946169","https://openalex.org/W2104915799","https://openalex.org/W4311938462","https://openalex.org/W3123068371"],"abstract_inverted_index":{"hhe@ebi.ac.uk.":[0]},"counts_by_year":[{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":7},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":2}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
