{"id":"https://openalex.org/W2151308866","doi":"https://doi.org/10.1093/bioinformatics/btr425","title":"CalcTav\u2014integration of a spreadsheet and Taverna workbench","display_name":"CalcTav\u2014integration of a spreadsheet and Taverna workbench","publication_year":2011,"publication_date":"2011-07-19","ids":{"openalex":"https://openalex.org/W2151308866","doi":"https://doi.org/10.1093/bioinformatics/btr425","mag":"2151308866","pmid":"https://pubmed.ncbi.nlm.nih.gov/21775305"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btr425","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr425","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5091346096","display_name":"Jacek Sroka","orcid":"https://orcid.org/0000-0002-1714-9667"},"institutions":[{"id":"https://openalex.org/I28290843","display_name":"University of Surrey","ror":"https://ror.org/00ks66431","country_code":"GB","type":"education","lineage":["https://openalex.org/I28290843"]},{"id":"https://openalex.org/I4654613","display_name":"University of Warsaw","ror":"https://ror.org/039bjqg32","country_code":"PL","type":"education","lineage":["https://openalex.org/I4654613"]}],"countries":["GB","PL"],"is_corresponding":true,"raw_author_name":"Jacek Sroka","raw_affiliation_strings":["1 Institute of Informatics, University of Warsaw, Warsaw, Poland and 2School of Biomedical and Molecular Sciences, University of Surrey, Guildford GU2 7XH, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Institute of Informatics, University of Warsaw, Warsaw, Poland and 2School of Biomedical and Molecular Sciences, University of Surrey, Guildford GU2 7XH, UK","institution_ids":["https://openalex.org/I28290843","https://openalex.org/I4654613"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005452842","display_name":"\u0141ukasz Krupa","orcid":"https://orcid.org/0000-0002-2218-8003"},"institutions":[{"id":"https://openalex.org/I28290843","display_name":"University of Surrey","ror":"https://ror.org/00ks66431","country_code":"GB","type":"education","lineage":["https://openalex.org/I28290843"]},{"id":"https://openalex.org/I4654613","display_name":"University of Warsaw","ror":"https://ror.org/039bjqg32","country_code":"PL","type":"education","lineage":["https://openalex.org/I4654613"]}],"countries":["GB","PL"],"is_corresponding":false,"raw_author_name":"\u0141ukasz Krupa","raw_affiliation_strings":["1 Institute of Informatics, University of Warsaw, Warsaw, Poland and 2School of Biomedical and Molecular Sciences, University of Surrey, Guildford GU2 7XH, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Institute of Informatics, University of Warsaw, Warsaw, Poland and 2School of Biomedical and Molecular Sciences, University of Surrey, Guildford GU2 7XH, UK","institution_ids":["https://openalex.org/I28290843","https://openalex.org/I4654613"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015589509","display_name":"Andrzej Kierzek","orcid":"https://orcid.org/0000-0002-2605-9057"},"institutions":[{"id":"https://openalex.org/I28290843","display_name":"University of Surrey","ror":"https://ror.org/00ks66431","country_code":"GB","type":"education","lineage":["https://openalex.org/I28290843"]},{"id":"https://openalex.org/I4654613","display_name":"University of Warsaw","ror":"https://ror.org/039bjqg32","country_code":"PL","type":"education","lineage":["https://openalex.org/I4654613"]}],"countries":["GB","PL"],"is_corresponding":false,"raw_author_name":"Andrzej M. Kierzek","raw_affiliation_strings":["1 Institute of Informatics, University of Warsaw, Warsaw, Poland and 2School of Biomedical and Molecular Sciences, University of Surrey, Guildford GU2 7XH, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Institute of Informatics, University of Warsaw, Warsaw, Poland and 2School of Biomedical and Molecular Sciences, University of Surrey, Guildford GU2 7XH, UK","institution_ids":["https://openalex.org/I28290843","https://openalex.org/I4654613"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5080463191","display_name":"Jerzy Tyszkiewicz","orcid":"https://orcid.org/0000-0003-2858-3124"},"institutions":[{"id":"https://openalex.org/I28290843","display_name":"University of Surrey","ror":"https://ror.org/00ks66431","country_code":"GB","type":"education","lineage":["https://openalex.org/I28290843"]},{"id":"https://openalex.org/I4654613","display_name":"University of Warsaw","ror":"https://ror.org/039bjqg32","country_code":"PL","type":"education","lineage":["https://openalex.org/I4654613"]}],"countries":["GB","PL"],"is_corresponding":false,"raw_author_name":"Jerzy Tyszkiewicz","raw_affiliation_strings":["1 Institute of Informatics, University of Warsaw, Warsaw, Poland and 2School of Biomedical and Molecular Sciences, University of Surrey, Guildford GU2 7XH, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Institute of Informatics, University of Warsaw, Warsaw, Poland and 2School of Biomedical and Molecular Sciences, University of Surrey, Guildford GU2 7XH, UK","institution_ids":["https://openalex.org/I28290843","https://openalex.org/I4654613"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5091346096"],"corresponding_institution_ids":["https://openalex.org/I28290843","https://openalex.org/I4654613"],"apc_list":{"value":3989,"currency":"USD","value_usd":3989},"apc_paid":null,"fwci":0.7562,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.83729974,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"27","issue":"18","first_page":"2618","last_page":"2619"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.7027999758720398,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.7027999758720398,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.10819999873638153,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11937","display_name":"Research Data Management Practices","score":0.034699998795986176,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.8516616225242615},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7801511287689209},{"id":"https://openalex.org/keywords/workbench","display_name":"Workbench","score":0.760960578918457},{"id":"https://openalex.org/keywords/scripting-language","display_name":"Scripting language","score":0.7128434181213379},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.6091779470443726},{"id":"https://openalex.org/keywords/plug-in","display_name":"Plug-in","score":0.6040139198303223},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.5549154281616211},{"id":"https://openalex.org/keywords/user-interface","display_name":"User interface","score":0.5035867094993591},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.4985373020172119},{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.4955085515975952},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.48069459199905396},{"id":"https://openalex.org/keywords/graphical-user-interface","display_name":"Graphical user interface","score":0.46762141585350037},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.3192380666732788},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.2755580544471741},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.13324704766273499},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.11694321036338806}],"concepts":[{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.8516616225242615},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7801511287689209},{"id":"https://openalex.org/C2779145975","wikidata":"https://www.wikidata.org/wiki/Q347690","display_name":"Workbench","level":3,"score":0.760960578918457},{"id":"https://openalex.org/C61423126","wikidata":"https://www.wikidata.org/wiki/Q187432","display_name":"Scripting language","level":2,"score":0.7128434181213379},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.6091779470443726},{"id":"https://openalex.org/C4924752","wikidata":"https://www.wikidata.org/wiki/Q184148","display_name":"Plug-in","level":2,"score":0.6040139198303223},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.5549154281616211},{"id":"https://openalex.org/C89505385","wikidata":"https://www.wikidata.org/wiki/Q47146","display_name":"User interface","level":2,"score":0.5035867094993591},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.4985373020172119},{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.4955085515975952},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.48069459199905396},{"id":"https://openalex.org/C37789001","wikidata":"https://www.wikidata.org/wiki/Q782543","display_name":"Graphical user interface","level":2,"score":0.46762141585350037},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.3192380666732788},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.2755580544471741},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.13324704766273499},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.11694321036338806},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/btr425","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr425","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:21775305","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21775305","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":"Journal Article"},{"id":"pmh:oai:alma.44SUR_INST:11139387140002346","is_oa":false,"landing_page_url":"https://openresearch.surrey.ac.uk/esploro/outputs/journalArticle/CalcTav--integration-of-a-spreadsheet-and-Taverna/99514177802346","pdf_url":null,"source":{"id":"https://openalex.org/S4210197018","display_name":"Open Research (University of Surrey)","issn_l":"2688-268X","issn":["2688-268X","2688-3988"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320595","host_organization_name":"Wiley","host_organization_lineage":["https://openalex.org/P4310320595"],"host_organization_lineage_names":["Wiley"],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"text"},{"id":"pmh:oai:epubs.surrey.ac.uk:239124","is_oa":false,"landing_page_url":"http://epubs.surrey.ac.uk/239124/2/SRI_deposit_agreement.pdf","pdf_url":null,"source":{"id":"https://openalex.org/S4306400680","display_name":"Surrey Research Insight Open Access (The University of Surrey)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I28290843","host_organization_name":"University of Surrey","host_organization_lineage":["https://openalex.org/I28290843"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:open-archive.highwire.org:bioinfo:27/18/2618","is_oa":false,"landing_page_url":"http://bioinformatics.oxfordjournals.org/cgi/content/short/27/18/2618","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9","score":0.5}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":6,"referenced_works":["https://openalex.org/W1983833794","https://openalex.org/W2096435507","https://openalex.org/W2134318033","https://openalex.org/W2137653635","https://openalex.org/W2140354550","https://openalex.org/W2172143128"],"related_works":["https://openalex.org/W2529681551","https://openalex.org/W2022625505","https://openalex.org/W3017187763","https://openalex.org/W3149566383","https://openalex.org/W83892589","https://openalex.org/W2061970522","https://openalex.org/W2909743663","https://openalex.org/W3125106243","https://openalex.org/W2044105167","https://openalex.org/W2151308866"],"abstract_inverted_index":{"MOTIVATION:":[0],"Taverna":[1,55,103,125,132],"workbench":[2],"is":[3,29,92,134,166],"an":[4],"environment":[5],"for":[6,95],"construction,":[7],"visualization":[8,145],"and":[9,28,42,81,120,138,146],"execution":[10],"of":[11,62,102,108,150],"bioinformatic":[12],"workflows":[13,76,123],"that":[14],"integrates":[15],"specialized":[16],"tools":[17,149],"available":[18,67,104,154,167],"on":[19],"the":[20,60,63,69,78,83,86,100,106,131,144,156],"Internet.":[21],"It":[22],"already":[23,116],"supports":[24],"major":[25],"bioinformatics":[26],"services":[27],"constantly":[30],"gaining":[31],"popularity.":[32],"However,":[33],"its":[34,50],"user":[35,162],"interface":[36,80],"requires":[37,44],"considerable":[38],"effort":[39],"to":[40,118,137,155],"learn,":[41],"sometimes":[43],"programming":[45],"or":[46],"scripting":[47],"experience":[48],"from":[49,139,170],"users.":[51],"We":[52],"have":[53],"integrated":[54],"with":[56,114,124],"OpenOffice":[57,96,151],"Calc,":[58,97],"making":[59],"functions":[61],"scientific":[64],"workflow":[65,157],"system":[66],"in":[68,105],"spreadsheet.":[70],"In":[71],"CalcTav,":[72],"one":[73],"can":[74],"define":[75,119],"using":[77,85],"spreadsheet":[79,87,109,122,140],"analyze":[82],"results":[84],"toolset.":[88],"RESULTS:":[89],"Technically,":[90],"CalcTav":[91,165],"a":[93],"plugin":[94],"which":[98],"provides":[99],"functionality":[101],"form":[107],"functions.":[110],"Even":[111],"basic":[112],"familiarity":[113],"spreadsheets":[115],"suffices":[117],"use":[121],"services.":[126],"The":[127],"data":[128,147],"processed":[129],"by":[130],"components":[133],"automatically":[135],"transferred":[136],"cells,":[141],"so":[142],"all":[143],"analysis":[148],"Calc":[152],"are":[153],"creator":[158],"within":[159],"one,":[160],"consistent":[161],"interface.":[163],"AVAILABILITY:":[164],"under":[168],"GPLv2":[169],"http://code.google.com/p/calctav/":[171],"CONTACT:":[172],"sroka@mimuw.edu.pl.":[173]},"counts_by_year":[{"year":2012,"cited_by_count":1}],"updated_date":"2026-08-26T07:47:46.906454","created_date":"2016-06-24T00:00:00"}