{"id":"https://openalex.org/W2104827963","doi":"https://doi.org/10.1093/bioinformatics/btr390","title":"Simple Neurite Tracer: open source software for reconstruction, visualization and analysis of neuronal processes","display_name":"Simple Neurite Tracer: open source software for reconstruction, visualization and analysis of neuronal processes","publication_year":2011,"publication_date":"2011-07-04","ids":{"openalex":"https://openalex.org/W2104827963","doi":"https://doi.org/10.1093/bioinformatics/btr390","mag":"2104827963","pmid":"https://pubmed.ncbi.nlm.nih.gov/21727141"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btr390","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr390","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/17/2453/48863246/bioinformatics_27_17_2453.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/27/17/2453/48863246/bioinformatics_27_17_2453.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5024201884","display_name":"Mark Longair","orcid":"https://orcid.org/0000-0002-2192-438X"},"institutions":[{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]},{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]},{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]}],"countries":["CH","GB"],"is_corresponding":true,"raw_author_name":"Mark H. Longair","raw_affiliation_strings":["1 Institute of Neuroinformatics, Uni/ETH Z\u00fcrich, Winterthurerstrasse 190, CH-8057 Z\u00fcrich, Switzerland, 2Department of Genetics, University of Cambridge, Cambridge CB2 3EH and 3Institute for Adaptive and Neural Computation, School of Informatics, The University of Edinburgh, Edinburgh EH8 9AB, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Institute of Neuroinformatics, Uni/ETH Z\u00fcrich, Winterthurerstrasse 190, CH-8057 Z\u00fcrich, Switzerland, 2Department of Genetics, University of Cambridge, Cambridge CB2 3EH and 3Institute for Adaptive and Neural Computation, School of Informatics, The University of Edinburgh, Edinburgh EH8 9AB, UK","institution_ids":["https://openalex.org/I241749","https://openalex.org/I35440088","https://openalex.org/I98677209"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081679524","display_name":"Dean A. Baker","orcid":null},"institutions":[{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]},{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]},{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]}],"countries":["CH","GB"],"is_corresponding":false,"raw_author_name":"Dean A. Baker","raw_affiliation_strings":["1 Institute of Neuroinformatics, Uni/ETH Z\u00fcrich, Winterthurerstrasse 190, CH-8057 Z\u00fcrich, Switzerland, 2Department of Genetics, University of Cambridge, Cambridge CB2 3EH and 3Institute for Adaptive and Neural Computation, School of Informatics, The University of Edinburgh, Edinburgh EH8 9AB, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Institute of Neuroinformatics, Uni/ETH Z\u00fcrich, Winterthurerstrasse 190, CH-8057 Z\u00fcrich, Switzerland, 2Department of Genetics, University of Cambridge, Cambridge CB2 3EH and 3Institute for Adaptive and Neural Computation, School of Informatics, The University of Edinburgh, Edinburgh EH8 9AB, UK","institution_ids":["https://openalex.org/I241749","https://openalex.org/I35440088","https://openalex.org/I98677209"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5026384936","display_name":"J. Douglas Armstrong","orcid":"https://orcid.org/0000-0002-5397-3864"},"institutions":[{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]},{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]},{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]}],"countries":["CH","GB"],"is_corresponding":false,"raw_author_name":"J. Douglas Armstrong","raw_affiliation_strings":["1 Institute of Neuroinformatics, Uni/ETH Z\u00fcrich, Winterthurerstrasse 190, CH-8057 Z\u00fcrich, Switzerland, 2Department of Genetics, University of Cambridge, Cambridge CB2 3EH and 3Institute for Adaptive and Neural Computation, School of Informatics, The University of Edinburgh, Edinburgh EH8 9AB, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Institute of Neuroinformatics, Uni/ETH Z\u00fcrich, Winterthurerstrasse 190, CH-8057 Z\u00fcrich, Switzerland, 2Department of Genetics, University of Cambridge, Cambridge CB2 3EH and 3Institute for Adaptive and Neural Computation, School of Informatics, The University of Edinburgh, Edinburgh EH8 9AB, UK","institution_ids":["https://openalex.org/I241749","https://openalex.org/I35440088","https://openalex.org/I98677209"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5024201884"],"corresponding_institution_ids":["https://openalex.org/I241749","https://openalex.org/I35440088","https://openalex.org/I98677209"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":24.0894,"has_fulltext":false,"cited_by_count":1087,"citation_normalized_percentile":{"value":0.99566075,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"27","issue":"17","first_page":"2453","last_page":"2454"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9729999899864197,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9729999899864197,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10540","display_name":"Advanced Fluorescence Microscopy Techniques","score":0.007899999618530273,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10857","display_name":"Advanced Electron Microscopy Techniques and Applications","score":0.0044999998062849045,"subfield":{"id":"https://openalex.org/subfields/1315","display_name":"Structural Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/tracing","display_name":"Tracing","score":0.8036511540412903},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7604392766952515},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.7163151502609253},{"id":"https://openalex.org/keywords/neurite","display_name":"Neurite","score":0.6493210792541504},{"id":"https://openalex.org/keywords/documentation","display_name":"Documentation","score":0.6204116344451904},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.6096834540367126},{"id":"https://openalex.org/keywords/open-source-software","display_name":"Open source software","score":0.515754222869873},{"id":"https://openalex.org/keywords/tracer","display_name":"TRACER","score":0.515403151512146},{"id":"https://openalex.org/keywords/dataflow","display_name":"Dataflow","score":0.5124445557594299},{"id":"https://openalex.org/keywords/construct","display_name":"Construct (python library)","score":0.49685099720954895},{"id":"https://openalex.org/keywords/simple","display_name":"Simple (philosophy)","score":0.4780619442462921},{"id":"https://openalex.org/keywords/open-source","display_name":"Open source","score":0.45464712381362915},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3695679306983948},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3583804965019226},{"id":"https://openalex.org/keywords/computer-graphics","display_name":"Computer graphics (images)","score":0.3457271456718445},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.23867928981781006},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.18220460414886475},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.09838399291038513},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.09234872460365295}],"concepts":[{"id":"https://openalex.org/C138673069","wikidata":"https://www.wikidata.org/wiki/Q322229","display_name":"Tracing","level":2,"score":0.8036511540412903},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7604392766952515},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.7163151502609253},{"id":"https://openalex.org/C113246987","wikidata":"https://www.wikidata.org/wiki/Q1534415","display_name":"Neurite","level":3,"score":0.6493210792541504},{"id":"https://openalex.org/C56666940","wikidata":"https://www.wikidata.org/wiki/Q788790","display_name":"Documentation","level":2,"score":0.6204116344451904},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.6096834540367126},{"id":"https://openalex.org/C2988343187","wikidata":"https://www.wikidata.org/wiki/Q1130645","display_name":"Open source software","level":3,"score":0.515754222869873},{"id":"https://openalex.org/C2778863792","wikidata":"https://www.wikidata.org/wiki/Q16909918","display_name":"TRACER","level":2,"score":0.515403151512146},{"id":"https://openalex.org/C96324660","wikidata":"https://www.wikidata.org/wiki/Q205446","display_name":"Dataflow","level":2,"score":0.5124445557594299},{"id":"https://openalex.org/C2780801425","wikidata":"https://www.wikidata.org/wiki/Q5164392","display_name":"Construct (python library)","level":2,"score":0.49685099720954895},{"id":"https://openalex.org/C2780586882","wikidata":"https://www.wikidata.org/wiki/Q7520643","display_name":"Simple (philosophy)","level":2,"score":0.4780619442462921},{"id":"https://openalex.org/C3018397939","wikidata":"https://www.wikidata.org/wiki/Q3644502","display_name":"Open source","level":3,"score":0.45464712381362915},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3695679306983948},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3583804965019226},{"id":"https://openalex.org/C121684516","wikidata":"https://www.wikidata.org/wiki/Q7600677","display_name":"Computer graphics (images)","level":1,"score":0.3457271456718445},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.23867928981781006},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.18220460414886475},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.09838399291038513},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.09234872460365295},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C185544564","wikidata":"https://www.wikidata.org/wiki/Q81197","display_name":"Nuclear physics","level":1,"score":0.0},{"id":"https://openalex.org/C202751555","wikidata":"https://www.wikidata.org/wiki/Q221681","display_name":"In vitro","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009474","descriptor_name":"Neurons","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D009474","descriptor_name":"Neurons","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D009474","descriptor_name":"Neurons","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016501","descriptor_name":"Neurites","qualifier_ui":"Q000648","qualifier_name":"ultrastructure","is_major_topic":false},{"descriptor_ui":"D016501","descriptor_name":"Neurites","qualifier_ui":"Q000648","qualifier_name":"ultrastructure","is_major_topic":false},{"descriptor_ui":"D016501","descriptor_name":"Neurites","qualifier_ui":"Q000648","qualifier_name":"ultrastructure","is_major_topic":false},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":7,"locations":[{"id":"doi:10.1093/bioinformatics/btr390","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr390","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/17/2453/48863246/bioinformatics_27_17_2453.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:21727141","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21727141","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:www.zora.uzh.ch:60654","is_oa":true,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306401281","display_name":"Zurich Open Repository and Archive (University of Zurich)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I202697423","host_organization_name":"University of Zurich","host_organization_lineage":["https://openalex.org/I202697423"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"Longair, M H; Baker, D A; Armstrong, J D (2011). Simple neurite tracer. Bioinformatics, 27(17):2453-2454.","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:open-archive.highwire.org:bioinfo:27/17/2453","is_oa":false,"landing_page_url":"http://bioinformatics.oxfordjournals.org/cgi/content/short/27/17/2453","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:oai:www.research-collection.ethz.ch:20.500.11850/39228","is_oa":true,"landing_page_url":"http://hdl.handle.net/20.500.11850/39228","pdf_url":null,"source":{"id":"https://openalex.org/S4306402302","display_name":"Repository for Publications and Research Data (ETH Zurich)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I35440088","host_organization_name":"ETH Zurich","host_organization_lineage":["https://openalex.org/I35440088"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, 27 (17)","raw_type":"info:eu-repo/semantics/article"},{"id":"doi:10.3929/ethz-b-000039228","is_oa":true,"landing_page_url":"https://doi.org/10.3929/ethz-b-000039228","pdf_url":null,"source":{"id":"https://openalex.org/S7407051236","display_name":"ETH Z\u00fcrich Research Collection","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"Other"},{"id":"doi:10.5167/uzh-60654","is_oa":true,"landing_page_url":"https://doi.org/10.5167/uzh-60654","pdf_url":null,"source":null,"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"JournalArticle"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btr390","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr390","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/17/2453/48863246/bioinformatics_27_17_2453.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Partnerships for the goals","score":0.5,"id":"https://metadata.un.org/sdg/17"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W2104827963.pdf"},"referenced_works_count":14,"referenced_works":["https://openalex.org/W1969483458","https://openalex.org/W2031502025","https://openalex.org/W2038492487","https://openalex.org/W2047951563","https://openalex.org/W2074633779","https://openalex.org/W2096320880","https://openalex.org/W2129534965","https://openalex.org/W2156012604","https://openalex.org/W2156755609","https://openalex.org/W2160182525","https://openalex.org/W2169931542","https://openalex.org/W2279313673","https://openalex.org/W6683680251","https://openalex.org/W7074132618"],"related_works":["https://openalex.org/W4376877853","https://openalex.org/W4250928611","https://openalex.org/W4232280318","https://openalex.org/W2063332991","https://openalex.org/W167327709","https://openalex.org/W4387839566","https://openalex.org/W4210922265","https://openalex.org/W4319870556","https://openalex.org/W1985865858","https://openalex.org/W166480398"],"abstract_inverted_index":{"MOTIVATION:":[0],"Advances":[1],"in":[2],"techniques":[3],"to":[4,11,31],"sparsely":[5],"label":[6],"neurons":[7,30],"unlock":[8],"the":[9,44,58,67,86,106],"potential":[10],"reconstruct":[12],"connectivity":[13],"from":[14],"3D":[15],"image":[16,70],"stacks":[17],"acquired":[18],"by":[19],"light":[20],"microscopy.":[21],"We":[22],"present":[23],"an":[24],"application":[25],"for":[26],"semi-automated":[27],"tracing":[28],"of":[29,85],"quickly":[32],"annotate":[33],"noisy":[34],"datasets":[35],"and":[36,64,76,89,97,100],"construct":[37],"complex":[38],"neuronal":[39],"topologies,":[40],"which":[41],"we":[42],"call":[43],"Simple":[45,49],"Neurite":[46,50],"Tracer.":[47],"AVAILABILITY:":[48],"Tracer":[51],"is":[52],"open":[53],"source":[54],"software,":[55],"licensed":[56],"under":[57],"GNU":[59],"General":[60],"Public":[61],"Licence":[62],"(GPL)":[63],"based":[65],"on":[66,93],"public":[68],"domain":[69],"processing":[71],"software":[72,75],"ImageJ.":[73],"The":[74],"further":[77],"documentation":[78],"are":[79,103],"available":[80,104],"via":[81],"http://fiji.sc/Simple_Neurite_Tracer":[82],"as":[83],"part":[84],"package":[87],"Fiji,":[88],"can":[90],"be":[91],"used":[92],"Windows,":[94],"Mac":[95],"OS":[96],"Linux.":[98],"Documentation":[99],"introductory":[101],"screencasts":[102],"at":[105],"same":[107],"URL.":[108],"CONTACT:":[109],"longair@ini.phys.ethz.ch;":[110],"longair@ini.phys.ethz.ch.":[111]},"counts_by_year":[{"year":2026,"cited_by_count":20},{"year":2025,"cited_by_count":52},{"year":2024,"cited_by_count":112},{"year":2023,"cited_by_count":69},{"year":2022,"cited_by_count":99},{"year":2021,"cited_by_count":135},{"year":2020,"cited_by_count":137},{"year":2019,"cited_by_count":120},{"year":2018,"cited_by_count":101},{"year":2017,"cited_by_count":69},{"year":2016,"cited_by_count":52},{"year":2015,"cited_by_count":43},{"year":2014,"cited_by_count":43},{"year":2013,"cited_by_count":24},{"year":2012,"cited_by_count":10}],"updated_date":"2026-07-28T07:46:37.118299","created_date":"2025-10-10T00:00:00"}
