{"id":"https://openalex.org/W2124012659","doi":"https://doi.org/10.1093/bioinformatics/btr378","title":"Biologically inspired EM image alignment and neural reconstruction","display_name":"Biologically inspired EM image alignment and neural reconstruction","publication_year":2011,"publication_date":"2011-07-08","ids":{"openalex":"https://openalex.org/W2124012659","doi":"https://doi.org/10.1093/bioinformatics/btr378","mag":"2124012659","pmid":"https://pubmed.ncbi.nlm.nih.gov/21742636"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btr378","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr378","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/16/2216/48866036/bioinformatics_27_16_2216.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/27/16/2216/48866036/bioinformatics_27_16_2216.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5029224773","display_name":"Seymour Knowles-Barley","orcid":null},"institutions":[{"id":"https://openalex.org/I129902397","display_name":"Dalhousie University","ror":"https://ror.org/01e6qks80","country_code":"CA","type":"education","lineage":["https://openalex.org/I129902397"]},{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]}],"countries":["CA","GB"],"is_corresponding":true,"raw_author_name":"Seymour Knowles-Barley","raw_affiliation_strings":["1 School of Informatics, The University of Edinburgh, Edinburgh, UK and 2Life Sciences Centre, Dalhousie University, Halifax, Nova Scotia, Canada"],"affiliations":[{"raw_affiliation_string":"1 School of Informatics, The University of Edinburgh, Edinburgh, UK and 2Life Sciences Centre, Dalhousie University, Halifax, Nova Scotia, Canada","institution_ids":["https://openalex.org/I129902397","https://openalex.org/I98677209"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074962363","display_name":"Nancy J. Butcher","orcid":"https://orcid.org/0000-0002-5152-0108"},"institutions":[{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]},{"id":"https://openalex.org/I129902397","display_name":"Dalhousie University","ror":"https://ror.org/01e6qks80","country_code":"CA","type":"education","lineage":["https://openalex.org/I129902397"]}],"countries":["CA","GB"],"is_corresponding":false,"raw_author_name":"Nancy J. Butcher","raw_affiliation_strings":["1 School of Informatics, The University of Edinburgh, Edinburgh, UK and 2Life Sciences Centre, Dalhousie University, Halifax, Nova Scotia, Canada"],"affiliations":[{"raw_affiliation_string":"1 School of Informatics, The University of Edinburgh, Edinburgh, UK and 2Life Sciences Centre, Dalhousie University, Halifax, Nova Scotia, Canada","institution_ids":["https://openalex.org/I129902397","https://openalex.org/I98677209"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056046056","display_name":"Ian A. Meinertzhagen","orcid":"https://orcid.org/0000-0002-6578-4526"},"institutions":[{"id":"https://openalex.org/I129902397","display_name":"Dalhousie University","ror":"https://ror.org/01e6qks80","country_code":"CA","type":"education","lineage":["https://openalex.org/I129902397"]},{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]}],"countries":["CA","GB"],"is_corresponding":false,"raw_author_name":"Ian A. Meinertzhagen","raw_affiliation_strings":["1 School of Informatics, The University of Edinburgh, Edinburgh, UK and 2Life Sciences Centre, Dalhousie University, Halifax, Nova Scotia, Canada"],"affiliations":[{"raw_affiliation_string":"1 School of Informatics, The University of Edinburgh, Edinburgh, UK and 2Life Sciences Centre, Dalhousie University, Halifax, Nova Scotia, Canada","institution_ids":["https://openalex.org/I129902397","https://openalex.org/I98677209"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5026384936","display_name":"J. Douglas Armstrong","orcid":"https://orcid.org/0000-0002-5397-3864"},"institutions":[{"id":"https://openalex.org/I129902397","display_name":"Dalhousie University","ror":"https://ror.org/01e6qks80","country_code":"CA","type":"education","lineage":["https://openalex.org/I129902397"]},{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]}],"countries":["CA","GB"],"is_corresponding":false,"raw_author_name":"J. Douglas Armstrong","raw_affiliation_strings":["1 School of Informatics, The University of Edinburgh, Edinburgh, UK and 2Life Sciences Centre, Dalhousie University, Halifax, Nova Scotia, Canada"],"affiliations":[{"raw_affiliation_string":"1 School of Informatics, The University of Edinburgh, Edinburgh, UK and 2Life Sciences Centre, Dalhousie University, Halifax, Nova Scotia, Canada","institution_ids":["https://openalex.org/I129902397","https://openalex.org/I98677209"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5029224773"],"corresponding_institution_ids":["https://openalex.org/I129902397","https://openalex.org/I98677209"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.0426,"has_fulltext":false,"cited_by_count":7,"citation_normalized_percentile":{"value":0.84028991,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"27","issue":"16","first_page":"2216","last_page":"2223"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10540","display_name":"Advanced Fluorescence Microscopy Techniques","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10540","display_name":"Advanced Fluorescence Microscopy Techniques","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10857","display_name":"Advanced Electron Microscopy Techniques and Applications","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/1315","display_name":"Structural Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9915000200271606,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7257735133171082},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.653540313243866},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.5444951057434082},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.5292255878448486},{"id":"https://openalex.org/keywords/dynamic-programming","display_name":"Dynamic programming","score":0.4782411456108093},{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.4745829105377197},{"id":"https://openalex.org/keywords/shortest-path-problem","display_name":"Shortest path problem","score":0.41770172119140625},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.24945762753486633},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.11107325553894043}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7257735133171082},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.653540313243866},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.5444951057434082},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.5292255878448486},{"id":"https://openalex.org/C37404715","wikidata":"https://www.wikidata.org/wiki/Q380679","display_name":"Dynamic programming","level":2,"score":0.4782411456108093},{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.4745829105377197},{"id":"https://openalex.org/C22590252","wikidata":"https://www.wikidata.org/wiki/Q1058754","display_name":"Shortest path problem","level":3,"score":0.41770172119140625},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.24945762753486633},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.11107325553894043},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002462","descriptor_name":"Cell Membrane","qualifier_ui":"Q000648","qualifier_name":"ultrastructure","is_major_topic":false},{"descriptor_ui":"D002462","descriptor_name":"Cell Membrane","qualifier_ui":"Q000648","qualifier_name":"ultrastructure","is_major_topic":false},{"descriptor_ui":"D002462","descriptor_name":"Cell Membrane","qualifier_ui":"Q000648","qualifier_name":"ultrastructure","is_major_topic":false},{"descriptor_ui":"D002462","descriptor_name":"Cell Membrane","qualifier_ui":"Q000648","qualifier_name":"ultrastructure","is_major_topic":false},{"descriptor_ui":"D004330","descriptor_name":"Drosophila","qualifier_ui":"Q000648","qualifier_name":"ultrastructure","is_major_topic":false},{"descriptor_ui":"D004330","descriptor_name":"Drosophila","qualifier_ui":"Q000648","qualifier_name":"ultrastructure","is_major_topic":false},{"descriptor_ui":"D004330","descriptor_name":"Drosophila","qualifier_ui":"Q000648","qualifier_name":"ultrastructure","is_major_topic":false},{"descriptor_ui":"D004330","descriptor_name":"Drosophila","qualifier_ui":"Q000648","qualifier_name":"ultrastructure","is_major_topic":false},{"descriptor_ui":"D009474","descriptor_name":"Neurons","qualifier_ui":"Q000648","qualifier_name":"ultrastructure","is_major_topic":false},{"descriptor_ui":"D009474","descriptor_name":"Neurons","qualifier_ui":"Q000648","qualifier_name":"ultrastructure","is_major_topic":false},{"descriptor_ui":"D009474","descriptor_name":"Neurons","qualifier_ui":"Q000648","qualifier_name":"ultrastructure","is_major_topic":false},{"descriptor_ui":"D009474","descriptor_name":"Neurons","qualifier_ui":"Q000648","qualifier_name":"ultrastructure","is_major_topic":false},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D046529","descriptor_name":"Microscopy, Electron, Transmission","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D046529","descriptor_name":"Microscopy, Electron, Transmission","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D046529","descriptor_name":"Microscopy, Electron, Transmission","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D046529","descriptor_name":"Microscopy, Electron, Transmission","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btr378","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr378","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/16/2216/48866036/bioinformatics_27_16_2216.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:21742636","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21742636","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:open-archive.highwire.org:bioinfo:27/16/2216","is_oa":false,"landing_page_url":"http://bioinformatics.oxfordjournals.org/cgi/content/short/27/16/2216","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btr378","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr378","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/16/2216/48866036/bioinformatics_27_16_2216.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G7889872133","display_name":null,"funder_award_id":"BB/G02247X/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2124012659.pdf","grobid_xml":"https://content.openalex.org/works/W2124012659.grobid-xml"},"referenced_works_count":62,"referenced_works":["https://openalex.org/W1577027628","https://openalex.org/W1585431621","https://openalex.org/W1586013021","https://openalex.org/W1759689472","https://openalex.org/W1844800426","https://openalex.org/W1964993764","https://openalex.org/W1969013163","https://openalex.org/W1984184825","https://openalex.org/W2010684254","https://openalex.org/W2019319323","https://openalex.org/W2026981426","https://openalex.org/W2027261517","https://openalex.org/W2027321353","https://openalex.org/W2029101220","https://openalex.org/W2033403400","https://openalex.org/W2047572290","https://openalex.org/W2062624347","https://openalex.org/W2064043367","https://openalex.org/W2070360070","https://openalex.org/W2074231493","https://openalex.org/W2076922159","https://openalex.org/W2085552397","https://openalex.org/W2087064593","https://openalex.org/W2087523977","https://openalex.org/W2088256340","https://openalex.org/W2094574421","https://openalex.org/W2102356568","https://openalex.org/W2103212315","https://openalex.org/W2104066896","https://openalex.org/W2106045181","https://openalex.org/W2111748868","https://openalex.org/W2121189958","https://openalex.org/W2124964688","https://openalex.org/W2128366179","https://openalex.org/W2142784661","https://openalex.org/W2145511217","https://openalex.org/W2145889472","https://openalex.org/W2146390400","https://openalex.org/W2154113160","https://openalex.org/W2160041854","https://openalex.org/W2164137768","https://openalex.org/W2165081065","https://openalex.org/W2166689701","https://openalex.org/W2602024037","https://openalex.org/W2764433274","https://openalex.org/W2911995690","https://openalex.org/W2963431010","https://openalex.org/W3144493974","https://openalex.org/W4229810054","https://openalex.org/W4297073864","https://openalex.org/W4301045096","https://openalex.org/W6634374606","https://openalex.org/W6634966438","https://openalex.org/W6637757992","https://openalex.org/W6642254446","https://openalex.org/W6655151659","https://openalex.org/W6673788169","https://openalex.org/W6675432946","https://openalex.org/W6675438902","https://openalex.org/W6682885817","https://openalex.org/W6683433606","https://openalex.org/W6684676251"],"related_works":["https://openalex.org/W2517104666","https://openalex.org/W2005437358","https://openalex.org/W1669643531","https://openalex.org/W2008656436","https://openalex.org/W2134924024","https://openalex.org/W2023558673","https://openalex.org/W2110230079","https://openalex.org/W1982826852","https://openalex.org/W2613186388","https://openalex.org/W1967061043"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2018,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":2},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
