{"id":"https://openalex.org/W2162144833","doi":"https://doi.org/10.1093/bioinformatics/btr361","title":"JSBML: a flexible Java library for working with SBML","display_name":"JSBML: a flexible Java library for working with SBML","publication_year":2011,"publication_date":"2011-06-22","ids":{"openalex":"https://openalex.org/W2162144833","doi":"https://doi.org/10.1093/bioinformatics/btr361","mag":"2162144833","pmid":"https://pubmed.ncbi.nlm.nih.gov/21697129"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btr361","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr361","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/15/2167/48865745/bioinformatics_27_15_2167.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/27/15/2167/48865745/bioinformatics_27_15_2167.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5065854572","display_name":"Andreas Dr\u00e4ger","orcid":"https://orcid.org/0000-0002-1240-5553"},"institutions":[{"id":"https://openalex.org/I87048295","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08","country_code":"GB","type":"funder","lineage":["https://openalex.org/I87048295"]},{"id":"https://openalex.org/I122411786","display_name":"California Institute of Technology","ror":"https://ror.org/05dxps055","country_code":"US","type":"education","lineage":["https://openalex.org/I122411786"]},{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB","US"],"is_corresponding":true,"raw_author_name":"Andreas Dr\u00e4ger","raw_affiliation_strings":["1 Center for Bioinformatics Tuebingen (ZBIT), University of Tuebingen, T\u00fcbingen, Germany, 2European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK and 3Computing and Mathematical Sciences, California Institute of Technology, Pasadena, CA, USA"],"affiliations":[{"raw_affiliation_string":"1 Center for Bioinformatics Tuebingen (ZBIT), University of Tuebingen, T\u00fcbingen, Germany, 2European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK and 3Computing and Mathematical Sciences, California Institute of Technology, Pasadena, CA, USA","institution_ids":["https://openalex.org/I122411786","https://openalex.org/I1303153112","https://openalex.org/I87048295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002460040","display_name":"Nicol\u00e1s Rodr\u00edguez","orcid":"https://orcid.org/0000-0002-9290-7894"},"institutions":[{"id":"https://openalex.org/I87048295","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08","country_code":"GB","type":"funder","lineage":["https://openalex.org/I87048295"]},{"id":"https://openalex.org/I122411786","display_name":"California Institute of Technology","ror":"https://ror.org/05dxps055","country_code":"US","type":"education","lineage":["https://openalex.org/I122411786"]},{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB","US"],"is_corresponding":false,"raw_author_name":"Nicolas Rodriguez","raw_affiliation_strings":["1 Center for Bioinformatics Tuebingen (ZBIT), University of Tuebingen, T\u00fcbingen, Germany, 2European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK and 3Computing and Mathematical Sciences, California Institute of Technology, Pasadena, CA, USA"],"affiliations":[{"raw_affiliation_string":"1 Center for Bioinformatics Tuebingen (ZBIT), University of Tuebingen, T\u00fcbingen, Germany, 2European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK and 3Computing and Mathematical Sciences, California Institute of Technology, Pasadena, CA, USA","institution_ids":["https://openalex.org/I122411786","https://openalex.org/I1303153112","https://openalex.org/I87048295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083900945","display_name":"Marine Dumousseau","orcid":null},"institutions":[{"id":"https://openalex.org/I122411786","display_name":"California Institute of Technology","ror":"https://ror.org/05dxps055","country_code":"US","type":"education","lineage":["https://openalex.org/I122411786"]},{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I87048295","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08","country_code":"GB","type":"funder","lineage":["https://openalex.org/I87048295"]}],"countries":["GB","US"],"is_corresponding":false,"raw_author_name":"Marine Dumousseau","raw_affiliation_strings":["1 Center for Bioinformatics Tuebingen (ZBIT), University of Tuebingen, T\u00fcbingen, Germany, 2European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK and 3Computing and Mathematical Sciences, California Institute of Technology, Pasadena, CA, USA"],"affiliations":[{"raw_affiliation_string":"1 Center for Bioinformatics Tuebingen (ZBIT), University of Tuebingen, T\u00fcbingen, Germany, 2European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK and 3Computing and Mathematical Sciences, California Institute of Technology, Pasadena, CA, USA","institution_ids":["https://openalex.org/I122411786","https://openalex.org/I1303153112","https://openalex.org/I87048295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088021958","display_name":"Alexander D\u00f6rr","orcid":null},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I122411786","display_name":"California Institute of Technology","ror":"https://ror.org/05dxps055","country_code":"US","type":"education","lineage":["https://openalex.org/I122411786"]},{"id":"https://openalex.org/I87048295","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08","country_code":"GB","type":"funder","lineage":["https://openalex.org/I87048295"]}],"countries":["GB","US"],"is_corresponding":false,"raw_author_name":"Alexander D\u00f6rr","raw_affiliation_strings":["1 Center for Bioinformatics Tuebingen (ZBIT), University of Tuebingen, T\u00fcbingen, Germany, 2European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK and 3Computing and Mathematical Sciences, California Institute of Technology, Pasadena, CA, USA"],"affiliations":[{"raw_affiliation_string":"1 Center for Bioinformatics Tuebingen (ZBIT), University of Tuebingen, T\u00fcbingen, Germany, 2European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK and 3Computing and Mathematical Sciences, California Institute of Technology, Pasadena, CA, USA","institution_ids":["https://openalex.org/I122411786","https://openalex.org/I1303153112","https://openalex.org/I87048295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083106620","display_name":"Clemens Wrzodek","orcid":"https://orcid.org/0000-0003-4995-780X"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I122411786","display_name":"California Institute of Technology","ror":"https://ror.org/05dxps055","country_code":"US","type":"education","lineage":["https://openalex.org/I122411786"]},{"id":"https://openalex.org/I87048295","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08","country_code":"GB","type":"funder","lineage":["https://openalex.org/I87048295"]}],"countries":["GB","US"],"is_corresponding":false,"raw_author_name":"Clemens Wrzodek","raw_affiliation_strings":["1 Center for Bioinformatics Tuebingen (ZBIT), University of Tuebingen, T\u00fcbingen, Germany, 2European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK and 3Computing and Mathematical Sciences, California Institute of Technology, Pasadena, CA, USA"],"affiliations":[{"raw_affiliation_string":"1 Center for Bioinformatics Tuebingen (ZBIT), University of Tuebingen, T\u00fcbingen, Germany, 2European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK and 3Computing and Mathematical Sciences, California Institute of Technology, Pasadena, CA, USA","institution_ids":["https://openalex.org/I122411786","https://openalex.org/I1303153112","https://openalex.org/I87048295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112438594","display_name":"Nicolas Le Nov\u00e8re","orcid":null},"institutions":[{"id":"https://openalex.org/I122411786","display_name":"California Institute of Technology","ror":"https://ror.org/05dxps055","country_code":"US","type":"education","lineage":["https://openalex.org/I122411786"]},{"id":"https://openalex.org/I87048295","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08","country_code":"GB","type":"funder","lineage":["https://openalex.org/I87048295"]},{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB","US"],"is_corresponding":false,"raw_author_name":"Nicolas Le Nov\u00e8re","raw_affiliation_strings":["1 Center for Bioinformatics Tuebingen (ZBIT), University of Tuebingen, T\u00fcbingen, Germany, 2European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK and 3Computing and Mathematical Sciences, California Institute of Technology, Pasadena, CA, USA"],"affiliations":[{"raw_affiliation_string":"1 Center for Bioinformatics Tuebingen (ZBIT), University of Tuebingen, T\u00fcbingen, Germany, 2European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK and 3Computing and Mathematical Sciences, California Institute of Technology, Pasadena, CA, USA","institution_ids":["https://openalex.org/I122411786","https://openalex.org/I1303153112","https://openalex.org/I87048295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004958444","display_name":"Andreas Zell","orcid":"https://orcid.org/0000-0003-3299-2211"},"institutions":[{"id":"https://openalex.org/I87048295","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08","country_code":"GB","type":"funder","lineage":["https://openalex.org/I87048295"]},{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I122411786","display_name":"California Institute of Technology","ror":"https://ror.org/05dxps055","country_code":"US","type":"education","lineage":["https://openalex.org/I122411786"]}],"countries":["GB","US"],"is_corresponding":false,"raw_author_name":"Andreas Zell","raw_affiliation_strings":["1 Center for Bioinformatics Tuebingen (ZBIT), University of Tuebingen, T\u00fcbingen, Germany, 2European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK and 3Computing and Mathematical Sciences, California Institute of Technology, Pasadena, CA, USA"],"affiliations":[{"raw_affiliation_string":"1 Center for Bioinformatics Tuebingen (ZBIT), University of Tuebingen, T\u00fcbingen, Germany, 2European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK and 3Computing and Mathematical Sciences, California Institute of Technology, Pasadena, CA, USA","institution_ids":["https://openalex.org/I122411786","https://openalex.org/I1303153112","https://openalex.org/I87048295"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5016716446","display_name":"Michael Hucka","orcid":"https://orcid.org/0000-0001-9105-5960"},"institutions":[{"id":"https://openalex.org/I87048295","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08","country_code":"GB","type":"funder","lineage":["https://openalex.org/I87048295"]},{"id":"https://openalex.org/I122411786","display_name":"California Institute of Technology","ror":"https://ror.org/05dxps055","country_code":"US","type":"education","lineage":["https://openalex.org/I122411786"]},{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB","US"],"is_corresponding":true,"raw_author_name":"Michael Hucka","raw_affiliation_strings":["1 Center for Bioinformatics Tuebingen (ZBIT), University of Tuebingen, T\u00fcbingen, Germany, 2European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK and 3Computing and Mathematical Sciences, California Institute of Technology, Pasadena, CA, USA"],"affiliations":[{"raw_affiliation_string":"1 Center for Bioinformatics Tuebingen (ZBIT), University of Tuebingen, T\u00fcbingen, Germany, 2European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK and 3Computing and Mathematical Sciences, California Institute of Technology, Pasadena, CA, USA","institution_ids":["https://openalex.org/I122411786","https://openalex.org/I1303153112","https://openalex.org/I87048295"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5016716446","https://openalex.org/A5065854572"],"corresponding_institution_ids":["https://openalex.org/I122411786","https://openalex.org/I1303153112","https://openalex.org/I87048295"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":5.2021,"has_fulltext":true,"cited_by_count":84,"citation_normalized_percentile":{"value":0.96575092,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"27","issue":"15","first_page":"2167","last_page":"2168"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/sbml","display_name":"SBML","score":0.9610755443572998},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8615792989730835},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.7339381575584412},{"id":"https://openalex.org/keywords/markup-language","display_name":"Markup language","score":0.732303261756897},{"id":"https://openalex.org/keywords/java","display_name":"Java","score":0.6877837777137756},{"id":"https://openalex.org/keywords/plug-in","display_name":"Plug-in","score":0.6800776124000549},{"id":"https://openalex.org/keywords/implementation","display_name":"Implementation","score":0.5019533634185791},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4961257874965668},{"id":"https://openalex.org/keywords/java-applet","display_name":"Java applet","score":0.41438567638397217},{"id":"https://openalex.org/keywords/application-programming-interface","display_name":"Application programming interface","score":0.4107193648815155},{"id":"https://openalex.org/keywords/strictfp","display_name":"strictfp","score":0.4106503427028656},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.3832142949104309},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.32377129793167114},{"id":"https://openalex.org/keywords/xml","display_name":"XML","score":0.17559951543807983}],"concepts":[{"id":"https://openalex.org/C87186988","wikidata":"https://www.wikidata.org/wiki/Q452197","display_name":"SBML","level":4,"score":0.9610755443572998},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8615792989730835},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.7339381575584412},{"id":"https://openalex.org/C45874996","wikidata":"https://www.wikidata.org/wiki/Q37045","display_name":"Markup language","level":3,"score":0.732303261756897},{"id":"https://openalex.org/C548217200","wikidata":"https://www.wikidata.org/wiki/Q251","display_name":"Java","level":2,"score":0.6877837777137756},{"id":"https://openalex.org/C4924752","wikidata":"https://www.wikidata.org/wiki/Q184148","display_name":"Plug-in","level":2,"score":0.6800776124000549},{"id":"https://openalex.org/C26713055","wikidata":"https://www.wikidata.org/wiki/Q245962","display_name":"Implementation","level":2,"score":0.5019533634185791},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4961257874965668},{"id":"https://openalex.org/C15524039","wikidata":"https://www.wikidata.org/wiki/Q865817","display_name":"Java applet","level":3,"score":0.41438567638397217},{"id":"https://openalex.org/C99613125","wikidata":"https://www.wikidata.org/wiki/Q165194","display_name":"Application programming interface","level":2,"score":0.4107193648815155},{"id":"https://openalex.org/C174954855","wikidata":"https://www.wikidata.org/wiki/Q7623626","display_name":"strictfp","level":4,"score":0.4106503427028656},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.3832142949104309},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.32377129793167114},{"id":"https://openalex.org/C8797682","wikidata":"https://www.wikidata.org/wiki/Q2115","display_name":"XML","level":2,"score":0.17559951543807983}],"mesh":[{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1093/bioinformatics/btr361","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr361","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/15/2167/48865745/bioinformatics_27_15_2167.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:21697129","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21697129","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:3137227","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3137227","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:authors.library.caltech.edu:24676","is_oa":true,"landing_page_url":"https://authors.library.caltech.edu/24676/","pdf_url":null,"source":{"id":"https://openalex.org/S4306402161","display_name":"CaltechAUTHORS (California Institute of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I122411786","host_organization_name":"California Institute of Technology","host_organization_lineage":["https://openalex.org/I122411786"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:HAL:hal-00767737v1","is_oa":false,"landing_page_url":"https://hal.science/hal-00767737","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, 2011, 27 ((15)), pp.2167-8. &#x27E8;10.1093/bioinformatics/btr361&#x27E9;","raw_type":"Journal articles"},{"id":"pmh:oai:open-archive.highwire.org:bioinfo:27/15/2167","is_oa":false,"landing_page_url":"http://bioinformatics.oxfordjournals.org/cgi/content/short/27/15/2167","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btr361","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr361","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/15/2167/48865745/bioinformatics_27_15_2167.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1490570443","display_name":null,"funder_award_id":"0315384C","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G1811438633","display_name":null,"funder_award_id":"GM07092","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3611247453","display_name":null,"funder_award_id":"R01GM","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3771654662","display_name":null,"funder_award_id":"GM070923","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4359693134","display_name":null,"funder_award_id":"NIGMS","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6782187388","display_name":null,"funder_award_id":"0315756","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G6955755495","display_name":null,"funder_award_id":"Germany","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G730969003","display_name":null,"funder_award_id":"BB/F010516/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320313288","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52"},{"id":"https://openalex.org/F4320321114","display_name":"Bundesministerium f\u00fcr Bildung und Forschung","ror":"https://ror.org/04pz7b180"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2162144833.pdf","grobid_xml":"https://content.openalex.org/works/W2162144833.grobid-xml"},"referenced_works_count":9,"referenced_works":["https://openalex.org/W2020561965","https://openalex.org/W2034463423","https://openalex.org/W2100827887","https://openalex.org/W2114124738","https://openalex.org/W2117364474","https://openalex.org/W2134221731","https://openalex.org/W2150908245","https://openalex.org/W2157529519","https://openalex.org/W3215028400"],"related_works":["https://openalex.org/W2082621456","https://openalex.org/W2150908245","https://openalex.org/W2981332207","https://openalex.org/W2211443823","https://openalex.org/W2100525485","https://openalex.org/W2040642413","https://openalex.org/W3048335229","https://openalex.org/W2146744007","https://openalex.org/W2890725831","https://openalex.org/W2159739447"],"abstract_inverted_index":{"Source":[0],"code,":[1],"binaries":[2],"and":[3],"documentation":[4],"for":[5],"JSBML":[6],"can":[7],"be":[8],"freely":[9],"obtained":[10],"under":[11],"the":[12,15,19],"terms":[13],"of":[14],"LGPL":[16],"2.1":[17],"from":[18],"website":[20],"http://sbml.org/Software/JSBML.":[21]},"counts_by_year":[{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":6},{"year":2019,"cited_by_count":6},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":10},{"year":2015,"cited_by_count":10},{"year":2014,"cited_by_count":12},{"year":2013,"cited_by_count":15},{"year":2012,"cited_by_count":8}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
