{"id":"https://openalex.org/W2170330565","doi":"https://doi.org/10.1093/bioinformatics/btr353","title":"A tree-based approach for motif discovery and sequence classification","display_name":"A tree-based approach for motif discovery and sequence classification","publication_year":2011,"publication_date":"2011-06-17","ids":{"openalex":"https://openalex.org/W2170330565","doi":"https://doi.org/10.1093/bioinformatics/btr353","mag":"2170330565","pmid":"https://pubmed.ncbi.nlm.nih.gov/21685048"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btr353","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr353","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100716371","display_name":"Rui Yan","orcid":"https://orcid.org/0000-0002-0694-9458"},"institutions":[{"id":"https://openalex.org/I112260969","display_name":"Ontario Institute for Cancer Research","ror":"https://ror.org/043q8yx54","country_code":"CA","type":"funder","lineage":["https://openalex.org/I112260969"]},{"id":"https://openalex.org/I1325899441","display_name":"University Health Network","ror":"https://ror.org/042xt5161","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441"]},{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]},{"id":"https://openalex.org/I2802654988","display_name":"Princess Margaret Cancer Centre","ror":"https://ror.org/03zayce58","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441","https://openalex.org/I2802654988"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Rui Yan","raw_affiliation_strings":["1 Department of Computer Science, University of Toronto, Toronto, Canada M5S 3G4, 2Ontario Cancer Institute and the Campbell Family Institute for Cancer Research, Princess Margaret Hospital/University Health Network, Toronto, Canada M5G 2L7, 3Ontario Institute for Cancer Research, Toronto, Canada M5S 0A3 and 4Department of Medical Biophysics, University of Toronto, Toronto, Canada M5S 1A8"],"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science, University of Toronto, Toronto, Canada M5S 3G4, 2Ontario Cancer Institute and the Campbell Family Institute for Cancer Research, Princess Margaret Hospital/University Health Network, Toronto, Canada M5G 2L7, 3Ontario Institute for Cancer Research, Toronto, Canada M5S 0A3 and 4Department of Medical Biophysics, University of Toronto, Toronto, Canada M5S 1A8","institution_ids":["https://openalex.org/I112260969","https://openalex.org/I2802654988","https://openalex.org/I1325899441","https://openalex.org/I185261750"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007657275","display_name":"Paul C. Boutros","orcid":"https://orcid.org/0000-0003-0553-7520"},"institutions":[{"id":"https://openalex.org/I112260969","display_name":"Ontario Institute for Cancer Research","ror":"https://ror.org/043q8yx54","country_code":"CA","type":"funder","lineage":["https://openalex.org/I112260969"]},{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]},{"id":"https://openalex.org/I1325899441","display_name":"University Health Network","ror":"https://ror.org/042xt5161","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441"]},{"id":"https://openalex.org/I2802654988","display_name":"Princess Margaret Cancer Centre","ror":"https://ror.org/03zayce58","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441","https://openalex.org/I2802654988"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Paul C. Boutros","raw_affiliation_strings":["1 Department of Computer Science, University of Toronto, Toronto, Canada M5S 3G4, 2Ontario Cancer Institute and the Campbell Family Institute for Cancer Research, Princess Margaret Hospital/University Health Network, Toronto, Canada M5G 2L7, 3Ontario Institute for Cancer Research, Toronto, Canada M5S 0A3 and 4Department of Medical Biophysics, University of Toronto, Toronto, Canada M5S 1A8"],"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science, University of Toronto, Toronto, Canada M5S 3G4, 2Ontario Cancer Institute and the Campbell Family Institute for Cancer Research, Princess Margaret Hospital/University Health Network, Toronto, Canada M5G 2L7, 3Ontario Institute for Cancer Research, Toronto, Canada M5S 0A3 and 4Department of Medical Biophysics, University of Toronto, Toronto, Canada M5S 1A8","institution_ids":["https://openalex.org/I112260969","https://openalex.org/I2802654988","https://openalex.org/I1325899441","https://openalex.org/I185261750"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5055656807","display_name":"Igor Juri\u0161ica","orcid":"https://orcid.org/0000-0002-2507-946X"},"institutions":[{"id":"https://openalex.org/I1325899441","display_name":"University Health Network","ror":"https://ror.org/042xt5161","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441"]},{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]},{"id":"https://openalex.org/I2802654988","display_name":"Princess Margaret Cancer Centre","ror":"https://ror.org/03zayce58","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1325899441","https://openalex.org/I2802654988"]},{"id":"https://openalex.org/I112260969","display_name":"Ontario Institute for Cancer Research","ror":"https://ror.org/043q8yx54","country_code":"CA","type":"funder","lineage":["https://openalex.org/I112260969"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Igor Jurisica","raw_affiliation_strings":["1 Department of Computer Science, University of Toronto, Toronto, Canada M5S 3G4, 2Ontario Cancer Institute and the Campbell Family Institute for Cancer Research, Princess Margaret Hospital/University Health Network, Toronto, Canada M5G 2L7, 3Ontario Institute for Cancer Research, Toronto, Canada M5S 0A3 and 4Department of Medical Biophysics, University of Toronto, Toronto, Canada M5S 1A8"],"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science, University of Toronto, Toronto, Canada M5S 3G4, 2Ontario Cancer Institute and the Campbell Family Institute for Cancer Research, Princess Margaret Hospital/University Health Network, Toronto, Canada M5G 2L7, 3Ontario Institute for Cancer Research, Toronto, Canada M5S 0A3 and 4Department of Medical Biophysics, University of Toronto, Toronto, Canada M5S 1A8","institution_ids":["https://openalex.org/I112260969","https://openalex.org/I2802654988","https://openalex.org/I1325899441","https://openalex.org/I185261750"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5100716371"],"corresponding_institution_ids":["https://openalex.org/I112260969","https://openalex.org/I1325899441","https://openalex.org/I185261750","https://openalex.org/I2802654988"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.5212,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.66226531,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"27","issue":"15","first_page":"2054","last_page":"2061"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9965999722480774,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6706629991531372},{"id":"https://openalex.org/keywords/multiple-sequence-alignment","display_name":"Multiple sequence alignment","score":0.5376876592636108},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5367572903633118},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.48210859298706055},{"id":"https://openalex.org/keywords/parallelizable-manifold","display_name":"Parallelizable manifold","score":0.4736974239349365},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.4485897421836853},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.4117697477340698},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3778461813926697},{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"Sequence alignment","score":0.3707963824272156},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.2968204617500305},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.18976306915283203},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.14487192034721375},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.08428096771240234},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.08338102698326111}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6706629991531372},{"id":"https://openalex.org/C88031987","wikidata":"https://www.wikidata.org/wiki/Q1377767","display_name":"Multiple sequence alignment","level":5,"score":0.5376876592636108},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5367572903633118},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.48210859298706055},{"id":"https://openalex.org/C148047603","wikidata":"https://www.wikidata.org/wiki/Q1014612","display_name":"Parallelizable manifold","level":2,"score":0.4736974239349365},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.4485897421836853},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.4117697477340698},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3778461813926697},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.3707963824272156},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.2968204617500305},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.18976306915283203},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.14487192034721375},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.08428096771240234},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.08338102698326111},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btr353","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr353","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:21685048","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21685048","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:open-archive.highwire.org:bioinfo:27/15/2054","is_oa":false,"landing_page_url":"http://bioinformatics.oxfordjournals.org/cgi/content/short/27/15/2054","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.5299999713897705,"display_name":"Reduced inequalities","id":"https://metadata.un.org/sdg/10"},{"score":0.4399999976158142,"display_name":"Peace, Justice and strong institutions","id":"https://metadata.un.org/sdg/16"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":37,"referenced_works":["https://openalex.org/W939280201","https://openalex.org/W1214546200","https://openalex.org/W1965555277","https://openalex.org/W1990343281","https://openalex.org/W1998300401","https://openalex.org/W2003138766","https://openalex.org/W2007771322","https://openalex.org/W2027350554","https://openalex.org/W2028904582","https://openalex.org/W2040163864","https://openalex.org/W2045385554","https://openalex.org/W2047549941","https://openalex.org/W2047744572","https://openalex.org/W2061008984","https://openalex.org/W2068011423","https://openalex.org/W2073850887","https://openalex.org/W2089783852","https://openalex.org/W2102304447","https://openalex.org/W2113117122","https://openalex.org/W2113515779","https://openalex.org/W2113529113","https://openalex.org/W2115761267","https://openalex.org/W2121906867","https://openalex.org/W2122621644","https://openalex.org/W2127783584","https://openalex.org/W2141408320","https://openalex.org/W2143226572","https://openalex.org/W2147055980","https://openalex.org/W2168783124","https://openalex.org/W2602756222","https://openalex.org/W2610493035","https://openalex.org/W2799061466","https://openalex.org/W2911964244","https://openalex.org/W4230946174","https://openalex.org/W6624607791","https://openalex.org/W6628147189","https://openalex.org/W6669145357"],"related_works":["https://openalex.org/W88386512","https://openalex.org/W2160791843","https://openalex.org/W2129361631","https://openalex.org/W2106241755","https://openalex.org/W1591831971","https://openalex.org/W1725737257","https://openalex.org/W1977143711","https://openalex.org/W2350395044","https://openalex.org/W40413237","https://openalex.org/W2067117360"],"abstract_inverted_index":{"The":[0],"algorithm,":[1],"code":[2],"and":[3],"data":[4],"are":[5],"available":[6],"at:":[7],"http://www.cs.utoronto.ca/~juris/data/TWPPDC":[8]},"counts_by_year":[{"year":2019,"cited_by_count":1},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":3}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
