{"id":"https://openalex.org/W2154068191","doi":"https://doi.org/10.1093/bioinformatics/btr286","title":"Model building and intelligent acquisition with application to protein subcellular location classification","display_name":"Model building and intelligent acquisition with application to protein subcellular location classification","publication_year":2011,"publication_date":"2011-05-09","ids":{"openalex":"https://openalex.org/W2154068191","doi":"https://doi.org/10.1093/bioinformatics/btr286","mag":"2154068191","pmid":"https://pubmed.ncbi.nlm.nih.gov/21558154"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btr286","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr286","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/13/1854/453099/btr286.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/27/13/1854/453099/btr286.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5082744675","display_name":"C. S. Jackson","orcid":"https://orcid.org/0000-0002-2870-4494"},"institutions":[{"id":"https://openalex.org/I74973139","display_name":"Carnegie Mellon University","ror":"https://ror.org/05x2bcf33","country_code":"US","type":"education","lineage":["https://openalex.org/I74973139"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"C. Jackson","raw_affiliation_strings":["1 Center for Bioimage Informatics, 2Department of Biomedical Engineering, 3Lane Center for Computational Biology, Carnegie Mellon University, 5000 Forbes Ave., 4Department of Biological Sciences, Carnegie Mellon University, 4400 Fifth Ave., 5Machine Learning Department, Carnegie Mellon University and 6Department of Electrical and Computer Engineering, Carnegie Mellon University, 5000 Forbes Ave., Pittsburgh, PA 15213, USA"],"affiliations":[{"raw_affiliation_string":"1 Center for Bioimage Informatics, 2Department of Biomedical Engineering, 3Lane Center for Computational Biology, Carnegie Mellon University, 5000 Forbes Ave., 4Department of Biological Sciences, Carnegie Mellon University, 4400 Fifth Ave., 5Machine Learning Department, Carnegie Mellon University and 6Department of Electrical and Computer Engineering, Carnegie Mellon University, 5000 Forbes Ave., Pittsburgh, PA 15213, USA","institution_ids":["https://openalex.org/I74973139"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050984408","display_name":"Estelle Glory-Afshar","orcid":null},"institutions":[{"id":"https://openalex.org/I74973139","display_name":"Carnegie Mellon University","ror":"https://ror.org/05x2bcf33","country_code":"US","type":"education","lineage":["https://openalex.org/I74973139"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"E. Glory\u2212Afshar","raw_affiliation_strings":["1 Center for Bioimage Informatics, 2Department of Biomedical Engineering, 3Lane Center for Computational Biology, Carnegie Mellon University, 5000 Forbes Ave., 4Department of Biological Sciences, Carnegie Mellon University, 4400 Fifth Ave., 5Machine Learning Department, Carnegie Mellon University and 6Department of Electrical and Computer Engineering, Carnegie Mellon University, 5000 Forbes Ave., Pittsburgh, PA 15213, USA"],"affiliations":[{"raw_affiliation_string":"1 Center for Bioimage Informatics, 2Department of Biomedical Engineering, 3Lane Center for Computational Biology, Carnegie Mellon University, 5000 Forbes Ave., 4Department of Biological Sciences, Carnegie Mellon University, 4400 Fifth Ave., 5Machine Learning Department, Carnegie Mellon University and 6Department of Electrical and Computer Engineering, Carnegie Mellon University, 5000 Forbes Ave., Pittsburgh, PA 15213, USA","institution_ids":["https://openalex.org/I74973139"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061773929","display_name":"Robert F. Murphy","orcid":"https://orcid.org/0000-0003-0358-901X"},"institutions":[{"id":"https://openalex.org/I74973139","display_name":"Carnegie Mellon University","ror":"https://ror.org/05x2bcf33","country_code":"US","type":"education","lineage":["https://openalex.org/I74973139"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"R. F. Murphy","raw_affiliation_strings":["1 Center for Bioimage Informatics, 2Department of Biomedical Engineering, 3Lane Center for Computational Biology, Carnegie Mellon University, 5000 Forbes Ave., 4Department of Biological Sciences, Carnegie Mellon University, 4400 Fifth Ave., 5Machine Learning Department, Carnegie Mellon University and 6Department of Electrical and Computer Engineering, Carnegie Mellon University, 5000 Forbes Ave., Pittsburgh, PA 15213, USA"],"affiliations":[{"raw_affiliation_string":"1 Center for Bioimage Informatics, 2Department of Biomedical Engineering, 3Lane Center for Computational Biology, Carnegie Mellon University, 5000 Forbes Ave., 4Department of Biological Sciences, Carnegie Mellon University, 4400 Fifth Ave., 5Machine Learning Department, Carnegie Mellon University and 6Department of Electrical and Computer Engineering, Carnegie Mellon University, 5000 Forbes Ave., Pittsburgh, PA 15213, USA","institution_ids":["https://openalex.org/I74973139"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101863660","display_name":"Jelena Kova\u010devi\u0107","orcid":"https://orcid.org/0000-0003-0139-2803"},"institutions":[{"id":"https://openalex.org/I74973139","display_name":"Carnegie Mellon University","ror":"https://ror.org/05x2bcf33","country_code":"US","type":"education","lineage":["https://openalex.org/I74973139"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"J. Kova\u010devi\u0107","raw_affiliation_strings":["1 Center for Bioimage Informatics, 2Department of Biomedical Engineering, 3Lane Center for Computational Biology, Carnegie Mellon University, 5000 Forbes Ave., 4Department of Biological Sciences, Carnegie Mellon University, 4400 Fifth Ave., 5Machine Learning Department, Carnegie Mellon University and 6Department of Electrical and Computer Engineering, Carnegie Mellon University, 5000 Forbes Ave., Pittsburgh, PA 15213, USA"],"affiliations":[{"raw_affiliation_string":"1 Center for Bioimage Informatics, 2Department of Biomedical Engineering, 3Lane Center for Computational Biology, Carnegie Mellon University, 5000 Forbes Ave., 4Department of Biological Sciences, Carnegie Mellon University, 4400 Fifth Ave., 5Machine Learning Department, Carnegie Mellon University and 6Department of Electrical and Computer Engineering, Carnegie Mellon University, 5000 Forbes Ave., Pittsburgh, PA 15213, USA","institution_ids":["https://openalex.org/I74973139"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5101863660"],"corresponding_institution_ids":["https://openalex.org/I74973139"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.4265,"has_fulltext":true,"cited_by_count":8,"citation_normalized_percentile":{"value":0.86270509,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"27","issue":"13","first_page":"1854","last_page":"1859"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13114","display_name":"Image Processing Techniques and Applications","score":0.9947999715805054,"subfield":{"id":"https://openalex.org/subfields/2214","display_name":"Media Technology"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9944999814033508,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8128083944320679},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.6709986925125122},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.6397278904914856},{"id":"https://openalex.org/keywords/data-acquisition","display_name":"Data acquisition","score":0.5337610840797424},{"id":"https://openalex.org/keywords/knowledge-acquisition","display_name":"Knowledge acquisition","score":0.5300334095954895},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5037252306938171},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4503190219402313},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3473576605319977},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.07553943991661072}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8128083944320679},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.6709986925125122},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.6397278904914856},{"id":"https://openalex.org/C163985040","wikidata":"https://www.wikidata.org/wiki/Q1172399","display_name":"Data acquisition","level":2,"score":0.5337610840797424},{"id":"https://openalex.org/C2777220311","wikidata":"https://www.wikidata.org/wiki/Q6423340","display_name":"Knowledge acquisition","level":2,"score":0.5300334095954895},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5037252306938171},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4503190219402313},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3473576605319977},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.07553943991661072}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002477","descriptor_name":"Cells","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D002477","descriptor_name":"Cells","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D002477","descriptor_name":"Cells","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016013","descriptor_name":"Likelihood Functions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016013","descriptor_name":"Likelihood Functions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016013","descriptor_name":"Likelihood Functions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D022082","descriptor_name":"Cellular Structures","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D022082","descriptor_name":"Cellular Structures","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D022082","descriptor_name":"Cellular Structures","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D038761","descriptor_name":"Photobleaching","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D038761","descriptor_name":"Photobleaching","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D038761","descriptor_name":"Photobleaching","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btr286","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr286","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/13/1854/453099/btr286.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:21558154","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21558154","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:open-archive.highwire.org:bioinfo:27/13/1854","is_oa":false,"landing_page_url":"http://bioinformatics.oxfordjournals.org/cgi/content/short/27/13/1854","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:oai:pubmedcentral.nih.gov:3117392","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3117392","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btr286","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr286","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/13/1854/453099/btr286.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.6499999761581421,"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9"}],"awards":[{"id":"https://openalex.org/G1551550854","display_name":null,"funder_award_id":"U54 RR022241","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3759727333","display_name":null,"funder_award_id":"RR022241","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4926128865","display_name":null,"funder_award_id":"EF-0331657","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5788981491","display_name":null,"funder_award_id":"GM075205","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G848032724","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G8700874257","display_name":"Information Technology Research (ITR):  Next-Generation Bio-Molecular Imaging and Information Discovery","funder_award_id":"0331657","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2154068191.pdf","grobid_xml":"https://content.openalex.org/works/W2154068191.grobid-xml"},"referenced_works_count":19,"referenced_works":["https://openalex.org/W349770100","https://openalex.org/W572230707","https://openalex.org/W995630646","https://openalex.org/W1506806321","https://openalex.org/W1540070193","https://openalex.org/W1663973292","https://openalex.org/W1964490706","https://openalex.org/W2092641791","https://openalex.org/W2119462282","https://openalex.org/W2121161622","https://openalex.org/W2134698701","https://openalex.org/W2148450400","https://openalex.org/W2161142345","https://openalex.org/W2163614729","https://openalex.org/W2321103494","https://openalex.org/W4252813286","https://openalex.org/W6611762666","https://openalex.org/W6680478705","https://openalex.org/W6683915439"],"related_works":["https://openalex.org/W2961085424","https://openalex.org/W4306674287","https://openalex.org/W4224009465","https://openalex.org/W2909896493","https://openalex.org/W4253683878","https://openalex.org/W2942685019","https://openalex.org/W2118594682","https://openalex.org/W2187151484","https://openalex.org/W265409323","https://openalex.org/W971255375"],"abstract_inverted_index":{"jelenak@cmu.edu.":[0]},"counts_by_year":[{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":1},{"year":2012,"cited_by_count":3}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
