{"id":"https://openalex.org/W2148032724","doi":"https://doi.org/10.1093/bioinformatics/btr257","title":"Improved similarity scores for comparing motifs","display_name":"Improved similarity scores for comparing motifs","publication_year":2011,"publication_date":"2011-05-04","ids":{"openalex":"https://openalex.org/W2148032724","doi":"https://doi.org/10.1093/bioinformatics/btr257","mag":"2148032724","pmid":"https://pubmed.ncbi.nlm.nih.gov/21543443"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btr257","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr257","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/12/1603/17124770/btr257.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/27/12/1603/17124770/btr257.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5038453269","display_name":"Emi Tanaka","orcid":"https://orcid.org/0000-0002-1455-259X"},"institutions":[{"id":"https://openalex.org/I129604602","display_name":"The University of Sydney","ror":"https://ror.org/0384j8v12","country_code":"AU","type":"education","lineage":["https://openalex.org/I129604602"]},{"id":"https://openalex.org/I165143802","display_name":"The University of Queensland","ror":"https://ror.org/00rqy9422","country_code":"AU","type":"education","lineage":["https://openalex.org/I165143802"]},{"id":"https://openalex.org/I201448701","display_name":"University of Washington","ror":"https://ror.org/00cvxb145","country_code":"US","type":"education","lineage":["https://openalex.org/I201448701"]}],"countries":["AU","US"],"is_corresponding":true,"raw_author_name":"Emi Tanaka","raw_affiliation_strings":["1 School of Mathematics and Statistics, The University of Sydney, Sydney, NSW Australia, 2Institute for Molecular Bioscience, The University of Queensland, Brisbane, QLD, Australia, 3Department of Genome Sciences and 4Department of Computer Science and Engineering, University of Washington, Seattle, WA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 School of Mathematics and Statistics, The University of Sydney, Sydney, NSW Australia, 2Institute for Molecular Bioscience, The University of Queensland, Brisbane, QLD, Australia, 3Department of Genome Sciences and 4Department of Computer Science and Engineering, University of Washington, Seattle, WA, USA","institution_ids":["https://openalex.org/I165143802","https://openalex.org/I129604602","https://openalex.org/I201448701"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017222669","display_name":"Timothy L. Bailey","orcid":"https://orcid.org/0000-0002-7018-9342"},"institutions":[{"id":"https://openalex.org/I129604602","display_name":"The University of Sydney","ror":"https://ror.org/0384j8v12","country_code":"AU","type":"education","lineage":["https://openalex.org/I129604602"]},{"id":"https://openalex.org/I165143802","display_name":"The University of Queensland","ror":"https://ror.org/00rqy9422","country_code":"AU","type":"education","lineage":["https://openalex.org/I165143802"]},{"id":"https://openalex.org/I201448701","display_name":"University of Washington","ror":"https://ror.org/00cvxb145","country_code":"US","type":"education","lineage":["https://openalex.org/I201448701"]}],"countries":["AU","US"],"is_corresponding":false,"raw_author_name":"Timothy Bailey","raw_affiliation_strings":["1 School of Mathematics and Statistics, The University of Sydney, Sydney, NSW Australia, 2Institute for Molecular Bioscience, The University of Queensland, Brisbane, QLD, Australia, 3Department of Genome Sciences and 4Department of Computer Science and Engineering, University of Washington, Seattle, WA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 School of Mathematics and Statistics, The University of Sydney, Sydney, NSW Australia, 2Institute for Molecular Bioscience, The University of Queensland, Brisbane, QLD, Australia, 3Department of Genome Sciences and 4Department of Computer Science and Engineering, University of Washington, Seattle, WA, USA","institution_ids":["https://openalex.org/I165143802","https://openalex.org/I129604602","https://openalex.org/I201448701"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112711469","display_name":"Charles E. Grant","orcid":null},"institutions":[{"id":"https://openalex.org/I129604602","display_name":"The University of Sydney","ror":"https://ror.org/0384j8v12","country_code":"AU","type":"education","lineage":["https://openalex.org/I129604602"]},{"id":"https://openalex.org/I165143802","display_name":"The University of Queensland","ror":"https://ror.org/00rqy9422","country_code":"AU","type":"education","lineage":["https://openalex.org/I165143802"]},{"id":"https://openalex.org/I201448701","display_name":"University of Washington","ror":"https://ror.org/00cvxb145","country_code":"US","type":"education","lineage":["https://openalex.org/I201448701"]}],"countries":["AU","US"],"is_corresponding":false,"raw_author_name":"Charles E. Grant","raw_affiliation_strings":["1 School of Mathematics and Statistics, The University of Sydney, Sydney, NSW Australia, 2Institute for Molecular Bioscience, The University of Queensland, Brisbane, QLD, Australia, 3Department of Genome Sciences and 4Department of Computer Science and Engineering, University of Washington, Seattle, WA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 School of Mathematics and Statistics, The University of Sydney, Sydney, NSW Australia, 2Institute for Molecular Bioscience, The University of Queensland, Brisbane, QLD, Australia, 3Department of Genome Sciences and 4Department of Computer Science and Engineering, University of Washington, Seattle, WA, USA","institution_ids":["https://openalex.org/I165143802","https://openalex.org/I129604602","https://openalex.org/I201448701"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057375933","display_name":"William Stafford Noble","orcid":"https://orcid.org/0000-0001-7283-4715"},"institutions":[{"id":"https://openalex.org/I129604602","display_name":"The University of Sydney","ror":"https://ror.org/0384j8v12","country_code":"AU","type":"education","lineage":["https://openalex.org/I129604602"]},{"id":"https://openalex.org/I165143802","display_name":"The University of Queensland","ror":"https://ror.org/00rqy9422","country_code":"AU","type":"education","lineage":["https://openalex.org/I165143802"]},{"id":"https://openalex.org/I201448701","display_name":"University of Washington","ror":"https://ror.org/00cvxb145","country_code":"US","type":"education","lineage":["https://openalex.org/I201448701"]}],"countries":["AU","US"],"is_corresponding":false,"raw_author_name":"William Stafford Noble","raw_affiliation_strings":["1 School of Mathematics and Statistics, The University of Sydney, Sydney, NSW Australia, 2Institute for Molecular Bioscience, The University of Queensland, Brisbane, QLD, Australia, 3Department of Genome Sciences and 4Department of Computer Science and Engineering, University of Washington, Seattle, WA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 School of Mathematics and Statistics, The University of Sydney, Sydney, NSW Australia, 2Institute for Molecular Bioscience, The University of Queensland, Brisbane, QLD, Australia, 3Department of Genome Sciences and 4Department of Computer Science and Engineering, University of Washington, Seattle, WA, USA","institution_ids":["https://openalex.org/I165143802","https://openalex.org/I129604602","https://openalex.org/I201448701"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5068879102","display_name":"Uri Keich","orcid":"https://orcid.org/0000-0002-3209-5011"},"institutions":[{"id":"https://openalex.org/I129604602","display_name":"The University of Sydney","ror":"https://ror.org/0384j8v12","country_code":"AU","type":"education","lineage":["https://openalex.org/I129604602"]},{"id":"https://openalex.org/I165143802","display_name":"The University of Queensland","ror":"https://ror.org/00rqy9422","country_code":"AU","type":"education","lineage":["https://openalex.org/I165143802"]},{"id":"https://openalex.org/I201448701","display_name":"University of Washington","ror":"https://ror.org/00cvxb145","country_code":"US","type":"education","lineage":["https://openalex.org/I201448701"]}],"countries":["AU","US"],"is_corresponding":true,"raw_author_name":"Uri Keich","raw_affiliation_strings":["1 School of Mathematics and Statistics, The University of Sydney, Sydney, NSW Australia, 2Institute for Molecular Bioscience, The University of Queensland, Brisbane, QLD, Australia, 3Department of Genome Sciences and 4Department of Computer Science and Engineering, University of Washington, Seattle, WA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 School of Mathematics and Statistics, The University of Sydney, Sydney, NSW Australia, 2Institute for Molecular Bioscience, The University of Queensland, Brisbane, QLD, Australia, 3Department of Genome Sciences and 4Department of Computer Science and Engineering, University of Washington, Seattle, WA, USA","institution_ids":["https://openalex.org/I165143802","https://openalex.org/I129604602","https://openalex.org/I201448701"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5038453269","https://openalex.org/A5068879102"],"corresponding_institution_ids":["https://openalex.org/I129604602","https://openalex.org/I165143802","https://openalex.org/I201448701"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":2.794,"has_fulltext":true,"cited_by_count":60,"citation_normalized_percentile":{"value":0.91130389,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"27","issue":"12","first_page":"1603","last_page":"1609"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.4309999942779541,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.4309999942779541,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.08649999648332596,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.06769999861717224,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/spurious-relationship","display_name":"Spurious relationship","score":0.8596504926681519},{"id":"https://openalex.org/keywords/motif","display_name":"Motif (music)","score":0.6816450357437134},{"id":"https://openalex.org/keywords/bayesian-probability","display_name":"Bayesian probability","score":0.6357177495956421},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.584259569644928},{"id":"https://openalex.org/keywords/suite","display_name":"Suite","score":0.49967503547668457},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.4975922405719757},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.4707912504673004},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.44976574182510376},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.41892069578170776},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4040731191635132},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.30973201990127563}],"concepts":[{"id":"https://openalex.org/C97256817","wikidata":"https://www.wikidata.org/wiki/Q1462316","display_name":"Spurious relationship","level":2,"score":0.8596504926681519},{"id":"https://openalex.org/C32276052","wikidata":"https://www.wikidata.org/wiki/Q908349","display_name":"Motif (music)","level":2,"score":0.6816450357437134},{"id":"https://openalex.org/C107673813","wikidata":"https://www.wikidata.org/wiki/Q812534","display_name":"Bayesian probability","level":2,"score":0.6357177495956421},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.584259569644928},{"id":"https://openalex.org/C79581498","wikidata":"https://www.wikidata.org/wiki/Q1367530","display_name":"Suite","level":2,"score":0.49967503547668457},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.4975922405719757},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.4707912504673004},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.44976574182510376},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.41892069578170776},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4040731191635132},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.30973201990127563},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C166957645","wikidata":"https://www.wikidata.org/wiki/Q23498","display_name":"Archaeology","level":1,"score":0.0},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0},{"id":"https://openalex.org/C95457728","wikidata":"https://www.wikidata.org/wiki/Q309","display_name":"History","level":0,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C24890656","wikidata":"https://www.wikidata.org/wiki/Q82811","display_name":"Acoustics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":8,"locations":[{"id":"doi:10.1093/bioinformatics/btr257","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr257","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/12/1603/17124770/btr257.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:21543443","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21543443","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:ro.uow.edu.au:eispapers-4221","is_oa":false,"landing_page_url":"https://ro.uow.edu.au/eispapers/3205","pdf_url":null,"source":{"id":"https://openalex.org/S4306400510","display_name":"Research Online (University of Wollongong)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I204824540","host_organization_name":"University of Wollongong","host_organization_lineage":["https://openalex.org/I204824540"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Faculty of Engineering and Information Sciences - Papers: Part A","raw_type":"article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.907.3322","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.907.3322","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://bioinformatics.oxfordjournals.org/content/early/2011/05/04/bioinformatics.btr257.full.pdf","raw_type":"text"},{"id":"pmh:oai:espace.library.uq.edu.au:UQ:259376","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306402388","display_name":"Queensland's institutional digital repository (The University of Queensland)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I165143802","host_organization_name":"The University of Queensland","host_organization_lineage":["https://openalex.org/I165143802"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"},{"id":"pmh:oai:europepmc.org:2380719","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3106196","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:open-archive.highwire.org:bioinfo:27/12/1603","is_oa":false,"landing_page_url":"http://bioinformatics.oxfordjournals.org/cgi/content/short/27/12/1603","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:oai:openresearch-repository.anu.edu.au:1885/733758074","is_oa":false,"landing_page_url":"https://hdl.handle.net/1885/733758074","pdf_url":null,"source":{"id":"https://openalex.org/S4306402539","display_name":"ANU Open Research (Australian National University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I118347636","host_organization_name":"Australian National University","host_organization_lineage":["https://openalex.org/I118347636"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Journal article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btr257","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr257","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/12/1603/17124770/btr257.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2148032724.pdf","grobid_xml":"https://content.openalex.org/works/W2148032724.grobid-xml"},"referenced_works_count":18,"referenced_works":["https://openalex.org/W1644724366","https://openalex.org/W2027662098","https://openalex.org/W2029056196","https://openalex.org/W2041877620","https://openalex.org/W2103777723","https://openalex.org/W2105003357","https://openalex.org/W2110403456","https://openalex.org/W2119804413","https://openalex.org/W2135221645","https://openalex.org/W2141408320","https://openalex.org/W2142570576","https://openalex.org/W2142890842","https://openalex.org/W2149769193","https://openalex.org/W2158266834","https://openalex.org/W2161849959","https://openalex.org/W2164814636","https://openalex.org/W3214380909","https://openalex.org/W4245668478"],"related_works":["https://openalex.org/W2162899405","https://openalex.org/W3113091479","https://openalex.org/W941090075","https://openalex.org/W3134374554","https://openalex.org/W2044987316","https://openalex.org/W2237480245","https://openalex.org/W4311248832","https://openalex.org/W2519167559","https://openalex.org/W2075065631","https://openalex.org/W4288358396"],"abstract_inverted_index":{"MOTIVATION:":[0],"A":[1],"question":[2],"that":[3,45,48,119,130],"often":[4],"comes":[5],"up":[6],"after":[7],"applying":[8],"a":[9,13,61,103,112,143],"motif":[10,24,149],"finder":[11],"to":[12,27,116,123,146,154],"set":[14],"of":[15,64,72,88,158,162,189,202],"co-regulated":[16],"DNA":[17],"sequences":[18],"is":[19,25,92,198],"whether":[20],"the":[21,46,124,131,156,187,203],"reported":[22,159],"putative":[23],"similar":[26,122],"any":[28,148],"known":[29],"motif.":[30],"While":[31],"several":[32],"tools":[33,80],"have":[34],"been":[35],"designed":[36],"for":[37,52],"this":[38,97],"task,":[39],"Habib":[40,99],"et":[41,100],"al.":[42,101],"pointed":[43],"out":[44],"scores":[47],"are":[49,120],"commonly":[50],"used":[51],"measuring":[53],"similarity":[54,150],"between":[55,60],"motifs":[56],"do":[57],"not":[58],"distinguish":[59],"good":[62],"alignment":[63,87],"two":[65,73],"informative":[66],"columns":[67,90],"(say,":[68],"all-A)":[69],"and":[70,139,171],"one":[71],"uninformative":[74,89,163,190],"columns.":[75,164],"This":[76],"observation":[77],"explains":[78],"why":[79],"such":[81],"as":[82,153,200],"Tomtom":[83,170,197],"occasionally":[84],"return":[85],"an":[86],"which":[91,110],"clearly":[93],"spurious.":[94],"To":[95],"address":[96],"problem,":[98],"suggested":[102],"new":[104],"score":[105,133,151],"[Bayesian":[106],"Likelihood":[107],"2-Component":[108],"(BLiC)]":[109],"uses":[111],"Bayesian":[113],"information":[114],"criterion":[115],"penalize":[117],"matches":[118],"also":[121],"background":[125],"distribution.":[126],"RESULTS:":[127],"We":[128,165],"show":[129,172],"BLiC":[132],"exhibits":[134],"other,":[135],"highly":[136],"undesirable":[137],"properties,":[138],"we":[140,183],"offer":[141],"instead":[142],"general":[144],"approach":[145],"adjust":[147],"so":[152],"reduce":[155,186],"number":[157,188],"spurious":[160],"alignments":[161],"implement":[166],"our":[167],"method":[168],"in":[169],"that,":[173],"without":[174],"significantly":[175],"compromising":[176],"Tomtom's":[177],"retrieval":[178],"accuracy":[179],"or":[180],"its":[181],"runtime,":[182],"can":[184],"drastically":[185],"alignments.":[191],"AVAILABILITY":[192],"AND":[193],"IMPLEMENTATION:":[194],"The":[195],"modified":[196],"available":[199],"part":[201],"MEME":[204],"Suite":[205],"at":[206],"http://meme.nbcr.net.":[207]},"counts_by_year":[{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":5},{"year":2015,"cited_by_count":4},{"year":2014,"cited_by_count":8},{"year":2013,"cited_by_count":6},{"year":2012,"cited_by_count":6}],"updated_date":"2026-06-04T09:04:59.091469","created_date":"2025-10-10T00:00:00"}
