{"id":"https://openalex.org/W2142595214","doi":"https://doi.org/10.1093/bioinformatics/btr233","title":"Rgtsp: a generalized top scoring pairs package for class prediction","display_name":"Rgtsp: a generalized top scoring pairs package for class prediction","publication_year":2011,"publication_date":"2011-04-19","ids":{"openalex":"https://openalex.org/W2142595214","doi":"https://doi.org/10.1093/bioinformatics/btr233","mag":"2142595214","pmid":"https://pubmed.ncbi.nlm.nih.gov/21505033"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btr233","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr233","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/12/1729/48860997/bioinformatics_27_12_1729.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/27/12/1729/48860997/bioinformatics_27_12_1729.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5057025096","display_name":"Vlad Popovici","orcid":"https://orcid.org/0000-0002-1311-9188"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"funder","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I5124864","display_name":"\u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne","ror":"https://ror.org/02s376052","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I5124864"]}],"countries":["CH"],"is_corresponding":true,"raw_author_name":"Vlad Popovici","raw_affiliation_strings":["1 Bioinformatics Core Facility, Swiss Institute of Bioinformatics, CH-1015 Lausanne, 2Swiss National Center of Competence in Research Molecular Oncology, School of Life Sciences, Ecole Polytechnique F\u00e9d\u00e9rale de Lausanne, Switzerland and 3Institute of Biostatistics and Analyses, Masaryk University, Brno, Czech Republic"],"affiliations":[{"raw_affiliation_string":"1 Bioinformatics Core Facility, Swiss Institute of Bioinformatics, CH-1015 Lausanne, 2Swiss National Center of Competence in Research Molecular Oncology, School of Life Sciences, Ecole Polytechnique F\u00e9d\u00e9rale de Lausanne, Switzerland and 3Institute of Biostatistics and Analyses, Masaryk University, Brno, Czech Republic","institution_ids":["https://openalex.org/I12708293","https://openalex.org/I5124864"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002524240","display_name":"Eva Bud\u00ednsk\u00e1","orcid":"https://orcid.org/0000-0002-9004-9187"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"funder","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I5124864","display_name":"\u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne","ror":"https://ror.org/02s376052","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I5124864"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Eva Budinsk\u00e1","raw_affiliation_strings":["1 Bioinformatics Core Facility, Swiss Institute of Bioinformatics, CH-1015 Lausanne, 2Swiss National Center of Competence in Research Molecular Oncology, School of Life Sciences, Ecole Polytechnique F\u00e9d\u00e9rale de Lausanne, Switzerland and 3Institute of Biostatistics and Analyses, Masaryk University, Brno, Czech Republic"],"affiliations":[{"raw_affiliation_string":"1 Bioinformatics Core Facility, Swiss Institute of Bioinformatics, CH-1015 Lausanne, 2Swiss National Center of Competence in Research Molecular Oncology, School of Life Sciences, Ecole Polytechnique F\u00e9d\u00e9rale de Lausanne, Switzerland and 3Institute of Biostatistics and Analyses, Masaryk University, Brno, Czech Republic","institution_ids":["https://openalex.org/I12708293","https://openalex.org/I5124864"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5078722669","display_name":"Mauro Delorenzi","orcid":"https://orcid.org/0000-0001-7631-3263"},"institutions":[{"id":"https://openalex.org/I5124864","display_name":"\u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne","ror":"https://ror.org/02s376052","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I5124864"]},{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"funder","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Mauro Delorenzi","raw_affiliation_strings":["1 Bioinformatics Core Facility, Swiss Institute of Bioinformatics, CH-1015 Lausanne, 2Swiss National Center of Competence in Research Molecular Oncology, School of Life Sciences, Ecole Polytechnique F\u00e9d\u00e9rale de Lausanne, Switzerland and 3Institute of Biostatistics and Analyses, Masaryk University, Brno, Czech Republic"],"affiliations":[{"raw_affiliation_string":"1 Bioinformatics Core Facility, Swiss Institute of Bioinformatics, CH-1015 Lausanne, 2Swiss National Center of Competence in Research Molecular Oncology, School of Life Sciences, Ecole Polytechnique F\u00e9d\u00e9rale de Lausanne, Switzerland and 3Institute of Biostatistics and Analyses, Masaryk University, Brno, Czech Republic","institution_ids":["https://openalex.org/I12708293","https://openalex.org/I5124864"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5057025096"],"corresponding_institution_ids":["https://openalex.org/I12708293","https://openalex.org/I5124864"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.754,"has_fulltext":true,"cited_by_count":7,"citation_normalized_percentile":{"value":0.8760861,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"27","issue":"12","first_page":"1729","last_page":"1730"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12535","display_name":"Machine Learning and Data Classification","score":0.9810000061988831,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T12535","display_name":"Machine Learning and Data Classification","score":0.9810000061988831,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10320","display_name":"Neural Networks and Applications","score":0.98089998960495,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10057","display_name":"Face and Expression Recognition","score":0.9786999821662903,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8194655179977417},{"id":"https://openalex.org/keywords/classifier","display_name":"Classifier (UML)","score":0.7991580963134766},{"id":"https://openalex.org/keywords/r-package","display_name":"R package","score":0.7147871255874634},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.5778071284294128},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5666050314903259},{"id":"https://openalex.org/keywords/class","display_name":"Class (philosophy)","score":0.5171427130699158},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.48007044196128845},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4589378237724304},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.34558629989624023},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.18526595830917358}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8194655179977417},{"id":"https://openalex.org/C95623464","wikidata":"https://www.wikidata.org/wiki/Q1096149","display_name":"Classifier (UML)","level":2,"score":0.7991580963134766},{"id":"https://openalex.org/C2984074130","wikidata":"https://www.wikidata.org/wiki/Q73539779","display_name":"R package","level":2,"score":0.7147871255874634},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.5778071284294128},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5666050314903259},{"id":"https://openalex.org/C2777212361","wikidata":"https://www.wikidata.org/wiki/Q5127848","display_name":"Class (philosophy)","level":2,"score":0.5171427130699158},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.48007044196128845},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4589378237724304},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.34558629989624023},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.18526595830917358}],"mesh":[{"descriptor_ui":"D002965","descriptor_name":"Classification","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002965","descriptor_name":"Classification","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002965","descriptor_name":"Classification","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D011960","descriptor_name":"Receptors, Estrogen","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011960","descriptor_name":"Receptors, Estrogen","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011960","descriptor_name":"Receptors, Estrogen","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":7,"locations":[{"id":"doi:10.1093/bioinformatics/btr233","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr233","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/12/1729/48860997/bioinformatics_27_12_1729.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:21505033","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21505033","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:serval.unil.ch:BIB_AA57B608F927","is_oa":true,"landing_page_url":"https://serval.unil.ch/notice/serval:BIB_AA57B608F927","pdf_url":null,"source":{"id":"https://openalex.org/S4306401797","display_name":"SERVAL (Universit\u00e9 de Lausanne)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210093590","host_organization_name":"Swiss School of Archaeology in Greece","host_organization_lineage":["https://openalex.org/I4210093590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics, vol. 27, no. 12, pp. 1729-1730","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:iris.unil.ch:iris/134472","is_oa":true,"landing_page_url":"https://iris.unil.ch/handle/iris/134472","pdf_url":"https://iris.unil.ch/bitstreams/b877e346-921a-4b91-8f34-5f4dcb065184/download","source":{"id":"https://openalex.org/S7407055444","display_name":"IRIS","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"journal article"},{"id":"pmh:oai:doc.rero.ch:298898","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306400148","display_name":"reroDoc Digital Library","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":""},{"id":"pmh:oai:infoscience.epfl.ch:171362","is_oa":true,"landing_page_url":"http://infoscience.epfl.ch/record/171362","pdf_url":null,"source":{"id":"https://openalex.org/S4306400487","display_name":"Infoscience (Ecole Polytechnique F\u00e9d\u00e9rale de Lausanne)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:open-archive.highwire.org:bioinfo:27/12/1729","is_oa":false,"landing_page_url":"http://bioinformatics.oxfordjournals.org/cgi/content/short/27/12/1729","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btr233","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr233","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/12/1729/48860997/bioinformatics_27_12_1729.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G7908228807","display_name":null,"funder_award_id":"Molecular","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G848032724","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320320924","display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung","ror":"https://ror.org/00yjd3n13"},{"id":"https://openalex.org/F4320325245","display_name":"Fondation Medic","ror":"https://ror.org/02z24na70"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2142595214.pdf","grobid_xml":"https://content.openalex.org/works/W2142595214.grobid-xml"},"referenced_works_count":9,"referenced_works":["https://openalex.org/W1480376833","https://openalex.org/W1554944419","https://openalex.org/W2007615926","https://openalex.org/W2154899482","https://openalex.org/W2160572762","https://openalex.org/W2171033594","https://openalex.org/W2171528238","https://openalex.org/W2172000360","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W2754214645","https://openalex.org/W2961085424","https://openalex.org/W4286629047","https://openalex.org/W4225126530","https://openalex.org/W4389426664","https://openalex.org/W4362511788","https://openalex.org/W4224009465","https://openalex.org/W4306674287","https://openalex.org/W4214589041","https://openalex.org/W4220668561"],"abstract_inverted_index":{"Full":[0],"C++":[1],"source":[2],"code":[3],"and":[4],"R":[5],"package":[6],"Rgtsp":[7],"are":[8],"freely":[9],"available":[10],"from":[11],"http://lausanne.isb-sib.ch/~vpopovic/research/.":[12],"The":[13],"implementation":[14],"relies":[15],"on":[16],"existing":[17],"OpenMP":[18],"libraries.":[19]},"counts_by_year":[{"year":2021,"cited_by_count":2},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":2},{"year":2012,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
