{"id":"https://openalex.org/W2098264959","doi":"https://doi.org/10.1093/bioinformatics/btr228","title":"From sets to graphs: towards a realistic enrichment analysis of transcriptomic systems","display_name":"From sets to graphs: towards a realistic enrichment analysis of transcriptomic systems","publication_year":2011,"publication_date":"2011-06-14","ids":{"openalex":"https://openalex.org/W2098264959","doi":"https://doi.org/10.1093/bioinformatics/btr228","mag":"2098264959","pmid":"https://pubmed.ncbi.nlm.nih.gov/21685094"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btr228","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr228","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/13/i366/48871924/bioinformatics_27_13_i366.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/27/13/i366/48871924/bioinformatics_27_13_i366.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5021558653","display_name":"Ludwig Geistlinger","orcid":"https://orcid.org/0000-0002-2495-5464"},"institutions":[{"id":"https://openalex.org/I8204097","display_name":"Ludwig-Maximilians-Universit\u00e4t M\u00fcnchen","ror":"https://ror.org/05591te55","country_code":"DE","type":"education","lineage":["https://openalex.org/I8204097"]},{"id":"https://openalex.org/I157614274","display_name":"University of Cape Town","ror":"https://ror.org/03p74gp79","country_code":"ZA","type":"education","lineage":["https://openalex.org/I157614274"]}],"countries":["DE","ZA"],"is_corresponding":true,"raw_author_name":"Ludwig Geistlinger","raw_affiliation_strings":["1 Institute for Informatics, Ludwig-Maximilians-Universit\u00e4t M\u00fcnchchen, Amalienstrasse 17, 80333 M\u00fcnchen, Germany and 2Department of Clinical Laboratory Sciences, Institute of Infectious Disease and Molecular Medicine, University of Cape Town, Anzio Road, Observatory, Cape Town 7925, South Africa"],"affiliations":[{"raw_affiliation_string":"1 Institute for Informatics, Ludwig-Maximilians-Universit\u00e4t M\u00fcnchchen, Amalienstrasse 17, 80333 M\u00fcnchen, Germany and 2Department of Clinical Laboratory Sciences, Institute of Infectious Disease and Molecular Medicine, University of Cape Town, Anzio Road, Observatory, Cape Town 7925, South Africa","institution_ids":["https://openalex.org/I8204097","https://openalex.org/I157614274"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061017439","display_name":"Gergely Csaba","orcid":"https://orcid.org/0000-0002-4320-3989"},"institutions":[{"id":"https://openalex.org/I157614274","display_name":"University of Cape Town","ror":"https://ror.org/03p74gp79","country_code":"ZA","type":"education","lineage":["https://openalex.org/I157614274"]},{"id":"https://openalex.org/I8204097","display_name":"Ludwig-Maximilians-Universit\u00e4t M\u00fcnchen","ror":"https://ror.org/05591te55","country_code":"DE","type":"education","lineage":["https://openalex.org/I8204097"]}],"countries":["DE","ZA"],"is_corresponding":false,"raw_author_name":"Gergely Csaba","raw_affiliation_strings":["1 Institute for Informatics, Ludwig-Maximilians-Universit\u00e4t M\u00fcnchchen, Amalienstrasse 17, 80333 M\u00fcnchen, Germany and 2Department of Clinical Laboratory Sciences, Institute of Infectious Disease and Molecular Medicine, University of Cape Town, Anzio Road, Observatory, Cape Town 7925, South Africa"],"affiliations":[{"raw_affiliation_string":"1 Institute for Informatics, Ludwig-Maximilians-Universit\u00e4t M\u00fcnchchen, Amalienstrasse 17, 80333 M\u00fcnchen, Germany and 2Department of Clinical Laboratory Sciences, Institute of Infectious Disease and Molecular Medicine, University of Cape Town, Anzio Road, Observatory, Cape Town 7925, South Africa","institution_ids":["https://openalex.org/I8204097","https://openalex.org/I157614274"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027062146","display_name":"Robert K\u00fcffner","orcid":null},"institutions":[{"id":"https://openalex.org/I157614274","display_name":"University of Cape Town","ror":"https://ror.org/03p74gp79","country_code":"ZA","type":"education","lineage":["https://openalex.org/I157614274"]},{"id":"https://openalex.org/I8204097","display_name":"Ludwig-Maximilians-Universit\u00e4t M\u00fcnchen","ror":"https://ror.org/05591te55","country_code":"DE","type":"education","lineage":["https://openalex.org/I8204097"]}],"countries":["DE","ZA"],"is_corresponding":false,"raw_author_name":"Robert K\u00fcffner","raw_affiliation_strings":["1 Institute for Informatics, Ludwig-Maximilians-Universit\u00e4t M\u00fcnchchen, Amalienstrasse 17, 80333 M\u00fcnchen, Germany and 2Department of Clinical Laboratory Sciences, Institute of Infectious Disease and Molecular Medicine, University of Cape Town, Anzio Road, Observatory, Cape Town 7925, South Africa"],"affiliations":[{"raw_affiliation_string":"1 Institute for Informatics, Ludwig-Maximilians-Universit\u00e4t M\u00fcnchchen, Amalienstrasse 17, 80333 M\u00fcnchen, Germany and 2Department of Clinical Laboratory Sciences, Institute of Infectious Disease and Molecular Medicine, University of Cape Town, Anzio Road, Observatory, Cape Town 7925, South Africa","institution_ids":["https://openalex.org/I8204097","https://openalex.org/I157614274"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080377820","display_name":"Nicola Mulder","orcid":"https://orcid.org/0000-0003-4905-0941"},"institutions":[{"id":"https://openalex.org/I157614274","display_name":"University of Cape Town","ror":"https://ror.org/03p74gp79","country_code":"ZA","type":"education","lineage":["https://openalex.org/I157614274"]},{"id":"https://openalex.org/I8204097","display_name":"Ludwig-Maximilians-Universit\u00e4t M\u00fcnchen","ror":"https://ror.org/05591te55","country_code":"DE","type":"education","lineage":["https://openalex.org/I8204097"]}],"countries":["DE","ZA"],"is_corresponding":false,"raw_author_name":"Nicola Mulder","raw_affiliation_strings":["1 Institute for Informatics, Ludwig-Maximilians-Universit\u00e4t M\u00fcnchchen, Amalienstrasse 17, 80333 M\u00fcnchen, Germany and 2Department of Clinical Laboratory Sciences, Institute of Infectious Disease and Molecular Medicine, University of Cape Town, Anzio Road, Observatory, Cape Town 7925, South Africa"],"affiliations":[{"raw_affiliation_string":"1 Institute for Informatics, Ludwig-Maximilians-Universit\u00e4t M\u00fcnchchen, Amalienstrasse 17, 80333 M\u00fcnchen, Germany and 2Department of Clinical Laboratory Sciences, Institute of Infectious Disease and Molecular Medicine, University of Cape Town, Anzio Road, Observatory, Cape Town 7925, South Africa","institution_ids":["https://openalex.org/I8204097","https://openalex.org/I157614274"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5068859428","display_name":"Ralf Zimmer","orcid":"https://orcid.org/0000-0003-1439-2327"},"institutions":[{"id":"https://openalex.org/I8204097","display_name":"Ludwig-Maximilians-Universit\u00e4t M\u00fcnchen","ror":"https://ror.org/05591te55","country_code":"DE","type":"education","lineage":["https://openalex.org/I8204097"]},{"id":"https://openalex.org/I157614274","display_name":"University of Cape Town","ror":"https://ror.org/03p74gp79","country_code":"ZA","type":"education","lineage":["https://openalex.org/I157614274"]}],"countries":["DE","ZA"],"is_corresponding":false,"raw_author_name":"Ralf Zimmer","raw_affiliation_strings":["1 Institute for Informatics, Ludwig-Maximilians-Universit\u00e4t M\u00fcnchchen, Amalienstrasse 17, 80333 M\u00fcnchen, Germany and 2Department of Clinical Laboratory Sciences, Institute of Infectious Disease and Molecular Medicine, University of Cape Town, Anzio Road, Observatory, Cape Town 7925, South Africa"],"affiliations":[{"raw_affiliation_string":"1 Institute for Informatics, Ludwig-Maximilians-Universit\u00e4t M\u00fcnchchen, Amalienstrasse 17, 80333 M\u00fcnchen, Germany and 2Department of Clinical Laboratory Sciences, Institute of Infectious Disease and Molecular Medicine, University of Cape Town, Anzio Road, Observatory, Cape Town 7925, South Africa","institution_ids":["https://openalex.org/I8204097","https://openalex.org/I157614274"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5021558653"],"corresponding_institution_ids":["https://openalex.org/I157614274","https://openalex.org/I8204097"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":3.1872,"has_fulltext":false,"cited_by_count":71,"citation_normalized_percentile":{"value":0.92532262,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"27","issue":"13","first_page":"i366","last_page":"i373"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9944999814033508,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.615349292755127},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.6123576164245605},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.5733476281166077},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.561716616153717},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5475614070892334},{"id":"https://openalex.org/keywords/pairwise-comparison","display_name":"Pairwise comparison","score":0.5427790284156799},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.5362733006477356},{"id":"https://openalex.org/keywords/gene-expression-profiling","display_name":"Gene expression profiling","score":0.5313091278076172},{"id":"https://openalex.org/keywords/regulation-of-gene-expression","display_name":"Regulation of gene expression","score":0.5119348764419556},{"id":"https://openalex.org/keywords/expression","display_name":"Expression (computer science)","score":0.45821303129196167},{"id":"https://openalex.org/keywords/concordance","display_name":"Concordance","score":0.4564911723136902},{"id":"https://openalex.org/keywords/consistency","display_name":"Consistency (knowledge bases)","score":0.45229896903038025},{"id":"https://openalex.org/keywords/correlation","display_name":"Correlation","score":0.4282170534133911},{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.4147719740867615},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.37663209438323975},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3460553288459778},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.19634348154067993},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.13996100425720215}],"concepts":[{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.615349292755127},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.6123576164245605},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5733476281166077},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.561716616153717},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5475614070892334},{"id":"https://openalex.org/C184898388","wikidata":"https://www.wikidata.org/wiki/Q1435712","display_name":"Pairwise comparison","level":2,"score":0.5427790284156799},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.5362733006477356},{"id":"https://openalex.org/C18431079","wikidata":"https://www.wikidata.org/wiki/Q1502169","display_name":"Gene expression profiling","level":4,"score":0.5313091278076172},{"id":"https://openalex.org/C165864922","wikidata":"https://www.wikidata.org/wiki/Q411391","display_name":"Regulation of gene expression","level":3,"score":0.5119348764419556},{"id":"https://openalex.org/C90559484","wikidata":"https://www.wikidata.org/wiki/Q778379","display_name":"Expression (computer science)","level":2,"score":0.45821303129196167},{"id":"https://openalex.org/C160798450","wikidata":"https://www.wikidata.org/wiki/Q4230870","display_name":"Concordance","level":2,"score":0.4564911723136902},{"id":"https://openalex.org/C2776436953","wikidata":"https://www.wikidata.org/wiki/Q5163215","display_name":"Consistency (knowledge bases)","level":2,"score":0.45229896903038025},{"id":"https://openalex.org/C117220453","wikidata":"https://www.wikidata.org/wiki/Q5172842","display_name":"Correlation","level":2,"score":0.4282170534133911},{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.4147719740867615},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.37663209438323975},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3460553288459778},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.19634348154067993},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.13996100425720215},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009380","descriptor_name":"Neoplasms, Nerve Tissue","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009380","descriptor_name":"Neoplasms, Nerve Tissue","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009380","descriptor_name":"Neoplasms, Nerve Tissue","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009380","descriptor_name":"Neoplasms, Nerve Tissue","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009380","descriptor_name":"Neoplasms, Nerve Tissue","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009380","descriptor_name":"Neoplasms, Nerve Tissue","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015972","descriptor_name":"Gene Expression Regulation, Neoplastic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015972","descriptor_name":"Gene Expression Regulation, Neoplastic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015972","descriptor_name":"Gene Expression Regulation, Neoplastic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btr228","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr228","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/13/i366/48871924/bioinformatics_27_13_i366.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:21685094","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21685094","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:open-archive.highwire.org:bioinfo:27/13/i366","is_oa":false,"landing_page_url":"http://bioinformatics.oxfordjournals.org/cgi/content/short/27/13/i366","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:oai:pubmedcentral.nih.gov:3117393","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3117393","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btr228","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr228","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/13/i366/48871924/bioinformatics_27_13_i366.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2098264959.pdf","grobid_xml":"https://content.openalex.org/works/W2098264959.grobid-xml"},"referenced_works_count":42,"referenced_works":["https://openalex.org/W97276429","https://openalex.org/W173042357","https://openalex.org/W653950636","https://openalex.org/W1588911128","https://openalex.org/W1876024155","https://openalex.org/W1969761972","https://openalex.org/W1972289591","https://openalex.org/W1985884134","https://openalex.org/W1991585392","https://openalex.org/W1996109622","https://openalex.org/W2011835017","https://openalex.org/W2012261425","https://openalex.org/W2015802650","https://openalex.org/W2034784092","https://openalex.org/W2047496194","https://openalex.org/W2049824934","https://openalex.org/W2061439657","https://openalex.org/W2061482527","https://openalex.org/W2103017472","https://openalex.org/W2106945333","https://openalex.org/W2108022229","https://openalex.org/W2116811581","https://openalex.org/W2121824548","https://openalex.org/W2127057035","https://openalex.org/W2130410032","https://openalex.org/W2130666470","https://openalex.org/W2132709500","https://openalex.org/W2134736660","https://openalex.org/W2135230352","https://openalex.org/W2136482257","https://openalex.org/W2137409194","https://openalex.org/W2139036189","https://openalex.org/W2150926065","https://openalex.org/W2159482845","https://openalex.org/W2160697532","https://openalex.org/W2169604162","https://openalex.org/W2912565176","https://openalex.org/W4210588810","https://openalex.org/W4211007335","https://openalex.org/W6603953719","https://openalex.org/W6606934444","https://openalex.org/W6832078704"],"related_works":["https://openalex.org/W2010571965","https://openalex.org/W2002709996","https://openalex.org/W4387092964","https://openalex.org/W2103471012","https://openalex.org/W2966064480","https://openalex.org/W2115810854","https://openalex.org/W2380236774","https://openalex.org/W4317476908","https://openalex.org/W4291672717","https://openalex.org/W2107149076"],"abstract_inverted_index":{"Ludwig.Geistlinger@bio.ifi.lmu.de;":[0],"Ralf.Zimmer@bio.ifi.lmu.de.":[1]},"counts_by_year":[{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":7},{"year":2020,"cited_by_count":6},{"year":2019,"cited_by_count":6},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":9},{"year":2015,"cited_by_count":5},{"year":2014,"cited_by_count":10},{"year":2013,"cited_by_count":6},{"year":2012,"cited_by_count":8}],"updated_date":"2026-03-08T08:50:53.379069","created_date":"2025-10-10T00:00:00"}
