{"id":"https://openalex.org/W2119191448","doi":"https://doi.org/10.1093/bioinformatics/btr217","title":"Sorting the nuclear proteome","display_name":"Sorting the nuclear proteome","publication_year":2011,"publication_date":"2011-06-14","ids":{"openalex":"https://openalex.org/W2119191448","doi":"https://doi.org/10.1093/bioinformatics/btr217","mag":"2119191448","pmid":"https://pubmed.ncbi.nlm.nih.gov/21685104"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btr217","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr217","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/13/i7/48884726/bioinformatics_27_13_i7.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/27/13/i7/48884726/bioinformatics_27_13_i7.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5107979977","display_name":"Denis C. Bauer","orcid":"https://orcid.org/0000-0001-8033-9810"},"institutions":[{"id":"https://openalex.org/I129902397","display_name":"Dalhousie University","ror":"https://ror.org/01e6qks80","country_code":"CA","type":"education","lineage":["https://openalex.org/I129902397"]},{"id":"https://openalex.org/I165143802","display_name":"The University of Queensland","ror":"https://ror.org/00rqy9422","country_code":"AU","type":"education","lineage":["https://openalex.org/I165143802"]}],"countries":["AU","CA"],"is_corresponding":false,"raw_author_name":"Denis C. Bauer","raw_affiliation_strings":["1 Queensland Brain Institute, 2Institute for Molecular Bioscience, 3School of Chemistry and Molecular Biosciences, 4Queensland Facility for Advanced Bioinformatics, The University of Queensland, St Lucia, Australia, 5Departments of Pathology and Biochemistry & Molecular Biology, Dalhousie University, Halifax, Nova Scotia, Canada and 6School of Information Technology and Electrical Engineering, The University of Queensland, St Lucia, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Queensland Brain Institute, 2Institute for Molecular Bioscience, 3School of Chemistry and Molecular Biosciences, 4Queensland Facility for Advanced Bioinformatics, The University of Queensland, St Lucia, Australia, 5Departments of Pathology and Biochemistry & Molecular Biology, Dalhousie University, Halifax, Nova Scotia, Canada and 6School of Information Technology and Electrical Engineering, The University of Queensland, St Lucia, Australia","institution_ids":["https://openalex.org/I165143802","https://openalex.org/I129902397"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012149059","display_name":"Kai Willadsen","orcid":null},"institutions":[{"id":"https://openalex.org/I129902397","display_name":"Dalhousie University","ror":"https://ror.org/01e6qks80","country_code":"CA","type":"education","lineage":["https://openalex.org/I129902397"]},{"id":"https://openalex.org/I165143802","display_name":"The University of Queensland","ror":"https://ror.org/00rqy9422","country_code":"AU","type":"education","lineage":["https://openalex.org/I165143802"]}],"countries":["AU","CA"],"is_corresponding":false,"raw_author_name":"Kai Willadsen","raw_affiliation_strings":["1 Queensland Brain Institute, 2Institute for Molecular Bioscience, 3School of Chemistry and Molecular Biosciences, 4Queensland Facility for Advanced Bioinformatics, The University of Queensland, St Lucia, Australia, 5Departments of Pathology and Biochemistry & Molecular Biology, Dalhousie University, Halifax, Nova Scotia, Canada and 6School of Information Technology and Electrical Engineering, The University of Queensland, St Lucia, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Queensland Brain Institute, 2Institute for Molecular Bioscience, 3School of Chemistry and Molecular Biosciences, 4Queensland Facility for Advanced Bioinformatics, The University of Queensland, St Lucia, Australia, 5Departments of Pathology and Biochemistry & Molecular Biology, Dalhousie University, Halifax, Nova Scotia, Canada and 6School of Information Technology and Electrical Engineering, The University of Queensland, St Lucia, Australia","institution_ids":["https://openalex.org/I165143802","https://openalex.org/I129902397"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075164642","display_name":"Fabian A. Buske","orcid":null},"institutions":[{"id":"https://openalex.org/I129902397","display_name":"Dalhousie University","ror":"https://ror.org/01e6qks80","country_code":"CA","type":"education","lineage":["https://openalex.org/I129902397"]},{"id":"https://openalex.org/I165143802","display_name":"The University of Queensland","ror":"https://ror.org/00rqy9422","country_code":"AU","type":"education","lineage":["https://openalex.org/I165143802"]}],"countries":["AU","CA"],"is_corresponding":false,"raw_author_name":"Fabian A. Buske","raw_affiliation_strings":["1 Queensland Brain Institute, 2Institute for Molecular Bioscience, 3School of Chemistry and Molecular Biosciences, 4Queensland Facility for Advanced Bioinformatics, The University of Queensland, St Lucia, Australia, 5Departments of Pathology and Biochemistry & Molecular Biology, Dalhousie University, Halifax, Nova Scotia, Canada and 6School of Information Technology and Electrical Engineering, The University of Queensland, St Lucia, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Queensland Brain Institute, 2Institute for Molecular Bioscience, 3School of Chemistry and Molecular Biosciences, 4Queensland Facility for Advanced Bioinformatics, The University of Queensland, St Lucia, Australia, 5Departments of Pathology and Biochemistry & Molecular Biology, Dalhousie University, Halifax, Nova Scotia, Canada and 6School of Information Technology and Electrical Engineering, The University of Queensland, St Lucia, Australia","institution_ids":["https://openalex.org/I165143802","https://openalex.org/I129902397"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091163780","display_name":"Kim\u2010Anh L\u00ea Cao","orcid":"https://orcid.org/0000-0003-3923-1116"},"institutions":[{"id":"https://openalex.org/I129902397","display_name":"Dalhousie University","ror":"https://ror.org/01e6qks80","country_code":"CA","type":"education","lineage":["https://openalex.org/I129902397"]},{"id":"https://openalex.org/I165143802","display_name":"The University of Queensland","ror":"https://ror.org/00rqy9422","country_code":"AU","type":"education","lineage":["https://openalex.org/I165143802"]}],"countries":["AU","CA"],"is_corresponding":false,"raw_author_name":"Kim-Anh L\u00ea Cao","raw_affiliation_strings":["1 Queensland Brain Institute, 2Institute for Molecular Bioscience, 3School of Chemistry and Molecular Biosciences, 4Queensland Facility for Advanced Bioinformatics, The University of Queensland, St Lucia, Australia, 5Departments of Pathology and Biochemistry & Molecular Biology, Dalhousie University, Halifax, Nova Scotia, Canada and 6School of Information Technology and Electrical Engineering, The University of Queensland, St Lucia, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Queensland Brain Institute, 2Institute for Molecular Bioscience, 3School of Chemistry and Molecular Biosciences, 4Queensland Facility for Advanced Bioinformatics, The University of Queensland, St Lucia, Australia, 5Departments of Pathology and Biochemistry & Molecular Biology, Dalhousie University, Halifax, Nova Scotia, Canada and 6School of Information Technology and Electrical Engineering, The University of Queensland, St Lucia, Australia","institution_ids":["https://openalex.org/I165143802","https://openalex.org/I129902397"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017222669","display_name":"Timothy L. Bailey","orcid":"https://orcid.org/0000-0002-7018-9342"},"institutions":[{"id":"https://openalex.org/I129902397","display_name":"Dalhousie University","ror":"https://ror.org/01e6qks80","country_code":"CA","type":"education","lineage":["https://openalex.org/I129902397"]},{"id":"https://openalex.org/I165143802","display_name":"The University of Queensland","ror":"https://ror.org/00rqy9422","country_code":"AU","type":"education","lineage":["https://openalex.org/I165143802"]}],"countries":["AU","CA"],"is_corresponding":false,"raw_author_name":"Timothy L. Bailey","raw_affiliation_strings":["1 Queensland Brain Institute, 2Institute for Molecular Bioscience, 3School of Chemistry and Molecular Biosciences, 4Queensland Facility for Advanced Bioinformatics, The University of Queensland, St Lucia, Australia, 5Departments of Pathology and Biochemistry & Molecular Biology, Dalhousie University, Halifax, Nova Scotia, Canada and 6School of Information Technology and Electrical Engineering, The University of Queensland, St Lucia, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Queensland Brain Institute, 2Institute for Molecular Bioscience, 3School of Chemistry and Molecular Biosciences, 4Queensland Facility for Advanced Bioinformatics, The University of Queensland, St Lucia, Australia, 5Departments of Pathology and Biochemistry & Molecular Biology, Dalhousie University, Halifax, Nova Scotia, Canada and 6School of Information Technology and Electrical Engineering, The University of Queensland, St Lucia, Australia","institution_ids":["https://openalex.org/I165143802","https://openalex.org/I129902397"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078364744","display_name":"Graham Dellaire","orcid":"https://orcid.org/0000-0002-3466-6316"},"institutions":[{"id":"https://openalex.org/I129902397","display_name":"Dalhousie University","ror":"https://ror.org/01e6qks80","country_code":"CA","type":"education","lineage":["https://openalex.org/I129902397"]},{"id":"https://openalex.org/I165143802","display_name":"The University of Queensland","ror":"https://ror.org/00rqy9422","country_code":"AU","type":"education","lineage":["https://openalex.org/I165143802"]}],"countries":["AU","CA"],"is_corresponding":false,"raw_author_name":"Graham Dellaire","raw_affiliation_strings":["1 Queensland Brain Institute, 2Institute for Molecular Bioscience, 3School of Chemistry and Molecular Biosciences, 4Queensland Facility for Advanced Bioinformatics, The University of Queensland, St Lucia, Australia, 5Departments of Pathology and Biochemistry & Molecular Biology, Dalhousie University, Halifax, Nova Scotia, Canada and 6School of Information Technology and Electrical Engineering, The University of Queensland, St Lucia, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Queensland Brain Institute, 2Institute for Molecular Bioscience, 3School of Chemistry and Molecular Biosciences, 4Queensland Facility for Advanced Bioinformatics, The University of Queensland, St Lucia, Australia, 5Departments of Pathology and Biochemistry & Molecular Biology, Dalhousie University, Halifax, Nova Scotia, Canada and 6School of Information Technology and Electrical Engineering, The University of Queensland, St Lucia, Australia","institution_ids":["https://openalex.org/I165143802","https://openalex.org/I129902397"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5045279138","display_name":"Mikael Bod\u00e9n","orcid":"https://orcid.org/0000-0003-3548-268X"},"institutions":[{"id":"https://openalex.org/I129902397","display_name":"Dalhousie University","ror":"https://ror.org/01e6qks80","country_code":"CA","type":"education","lineage":["https://openalex.org/I129902397"]},{"id":"https://openalex.org/I165143802","display_name":"The University of Queensland","ror":"https://ror.org/00rqy9422","country_code":"AU","type":"education","lineage":["https://openalex.org/I165143802"]}],"countries":["AU","CA"],"is_corresponding":true,"raw_author_name":"Mikael Bod\u00e9n","raw_affiliation_strings":["1 Queensland Brain Institute, 2Institute for Molecular Bioscience, 3School of Chemistry and Molecular Biosciences, 4Queensland Facility for Advanced Bioinformatics, The University of Queensland, St Lucia, Australia, 5Departments of Pathology and Biochemistry & Molecular Biology, Dalhousie University, Halifax, Nova Scotia, Canada and 6School of Information Technology and Electrical Engineering, The University of Queensland, St Lucia, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Queensland Brain Institute, 2Institute for Molecular Bioscience, 3School of Chemistry and Molecular Biosciences, 4Queensland Facility for Advanced Bioinformatics, The University of Queensland, St Lucia, Australia, 5Departments of Pathology and Biochemistry & Molecular Biology, Dalhousie University, Halifax, Nova Scotia, Canada and 6School of Information Technology and Electrical Engineering, The University of Queensland, St Lucia, Australia","institution_ids":["https://openalex.org/I165143802","https://openalex.org/I129902397"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5045279138"],"corresponding_institution_ids":["https://openalex.org/I129902397","https://openalex.org/I165143802"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":1.8629,"has_fulltext":true,"cited_by_count":22,"citation_normalized_percentile":{"value":0.85480814,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"27","issue":"13","first_page":"i7","last_page":"i14"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11841","display_name":"Nuclear Structure and Function","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/proteome","display_name":"Proteome","score":0.7171356678009033},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6872326135635376},{"id":"https://openalex.org/keywords/nuclear-protein","display_name":"Nuclear protein","score":0.5304358005523682},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5193634629249573},{"id":"https://openalex.org/keywords/nuclear-transport","display_name":"Nuclear transport","score":0.49974751472473145},{"id":"https://openalex.org/keywords/sorting","display_name":"Sorting","score":0.45639628171920776},{"id":"https://openalex.org/keywords/compartment","display_name":"Compartment (ship)","score":0.4250982403755188},{"id":"https://openalex.org/keywords/transcription-factor","display_name":"Transcription factor","score":0.42473143339157104},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.35813644528388977},{"id":"https://openalex.org/keywords/cell-nucleus","display_name":"Cell nucleus","score":0.3530920147895813},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.32947811484336853},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.25794780254364014},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.24209541082382202}],"concepts":[{"id":"https://openalex.org/C104397665","wikidata":"https://www.wikidata.org/wiki/Q860947","display_name":"Proteome","level":2,"score":0.7171356678009033},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6872326135635376},{"id":"https://openalex.org/C29512474","wikidata":"https://www.wikidata.org/wiki/Q16860021","display_name":"Nuclear protein","level":4,"score":0.5304358005523682},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5193634629249573},{"id":"https://openalex.org/C59157529","wikidata":"https://www.wikidata.org/wiki/Q994741","display_name":"Nuclear transport","level":4,"score":0.49974751472473145},{"id":"https://openalex.org/C111696304","wikidata":"https://www.wikidata.org/wiki/Q2303697","display_name":"Sorting","level":2,"score":0.45639628171920776},{"id":"https://openalex.org/C203635412","wikidata":"https://www.wikidata.org/wiki/Q17007432","display_name":"Compartment (ship)","level":2,"score":0.4250982403755188},{"id":"https://openalex.org/C86339819","wikidata":"https://www.wikidata.org/wiki/Q407384","display_name":"Transcription factor","level":3,"score":0.42473143339157104},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.35813644528388977},{"id":"https://openalex.org/C2780114586","wikidata":"https://www.wikidata.org/wiki/Q40260","display_name":"Cell nucleus","level":3,"score":0.3530920147895813},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.32947811484336853},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.25794780254364014},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.24209541082382202},{"id":"https://openalex.org/C127313418","wikidata":"https://www.wikidata.org/wiki/Q1069","display_name":"Geology","level":0,"score":0.0},{"id":"https://openalex.org/C111368507","wikidata":"https://www.wikidata.org/wiki/Q43518","display_name":"Oceanography","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002467","descriptor_name":"Cell Nucleus","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D002467","descriptor_name":"Cell Nucleus","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D002467","descriptor_name":"Cell Nucleus","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D002467","descriptor_name":"Cell Nucleus","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D002467","descriptor_name":"Cell Nucleus","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D002467","descriptor_name":"Cell Nucleus","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D009687","descriptor_name":"Nuclear Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009687","descriptor_name":"Nuclear Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009687","descriptor_name":"Nuclear Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011499","descriptor_name":"Protein Processing, Post-Translational","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011499","descriptor_name":"Protein Processing, Post-Translational","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011499","descriptor_name":"Protein Processing, Post-Translational","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D021381","descriptor_name":"Protein Transport","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D021381","descriptor_name":"Protein Transport","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D021381","descriptor_name":"Protein Transport","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D045586","descriptor_name":"Intranuclear Inclusion Bodies","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D045586","descriptor_name":"Intranuclear Inclusion Bodies","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D045586","descriptor_name":"Intranuclear Inclusion Bodies","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D045586","descriptor_name":"Intranuclear Inclusion Bodies","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D045586","descriptor_name":"Intranuclear Inclusion Bodies","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D045586","descriptor_name":"Intranuclear Inclusion Bodies","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/btr217","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr217","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/13/i7/48884726/bioinformatics_27_13_i7.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:21685104","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21685104","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:espace.library.uq.edu.au:UQ:253979","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306402388","display_name":"Queensland's institutional digital repository (The University of Queensland)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I165143802","host_organization_name":"The University of Queensland","host_organization_lineage":["https://openalex.org/I165143802"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"},{"id":"pmh:oai:open-archive.highwire.org:bioinfo:27/13/i7","is_oa":false,"landing_page_url":"http://bioinformatics.oxfordjournals.org/cgi/content/short/27/13/i7","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:oai:pubmedcentral.nih.gov:3117375","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3117375","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btr217","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr217","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/13/i7/48884726/bioinformatics_27_13_i7.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.6800000071525574,"id":"https://metadata.un.org/sdg/16","display_name":"Peace, Justice and strong institutions"}],"awards":[{"id":"https://openalex.org/G1592878485","display_name":null,"funder_award_id":"MOP-84260","funder_id":"https://openalex.org/F4320334506","funder_display_name":"Canadian Institutes of Health Research"}],"funders":[{"id":"https://openalex.org/F4320334506","display_name":"Canadian Institutes of Health Research","ror":"https://ror.org/01gavpb45"},{"id":"https://openalex.org/F4320334704","display_name":"Australian Research Council","ror":"https://ror.org/05mmh0f86"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2119191448.pdf","grobid_xml":"https://content.openalex.org/works/W2119191448.grobid-xml"},"referenced_works_count":58,"referenced_works":["https://openalex.org/W1906857739","https://openalex.org/W1964129310","https://openalex.org/W1976572901","https://openalex.org/W1976732528","https://openalex.org/W1978461534","https://openalex.org/W1982447331","https://openalex.org/W1986396604","https://openalex.org/W1986974894","https://openalex.org/W1996748544","https://openalex.org/W2002373110","https://openalex.org/W2005664674","https://openalex.org/W2022521591","https://openalex.org/W2027085235","https://openalex.org/W2031990788","https://openalex.org/W2038926095","https://openalex.org/W2042012963","https://openalex.org/W2048492672","https://openalex.org/W2050271662","https://openalex.org/W2050621375","https://openalex.org/W2063083122","https://openalex.org/W2065206315","https://openalex.org/W2065427389","https://openalex.org/W2070072684","https://openalex.org/W2071883855","https://openalex.org/W2083309296","https://openalex.org/W2083760725","https://openalex.org/W2084787613","https://openalex.org/W2084970371","https://openalex.org/W2085649942","https://openalex.org/W2088663324","https://openalex.org/W2089200829","https://openalex.org/W2098549100","https://openalex.org/W2101289642","https://openalex.org/W2101871282","https://openalex.org/W2111072547","https://openalex.org/W2116423958","https://openalex.org/W2118183757","https://openalex.org/W2123121534","https://openalex.org/W2126824096","https://openalex.org/W2127394968","https://openalex.org/W2130090902","https://openalex.org/W2134762011","https://openalex.org/W2135030836","https://openalex.org/W2135577721","https://openalex.org/W2138136126","https://openalex.org/W2143658931","https://openalex.org/W2144245358","https://openalex.org/W2151291255","https://openalex.org/W2157142295","https://openalex.org/W2162533342","https://openalex.org/W2162648910","https://openalex.org/W2164683872","https://openalex.org/W2168986424","https://openalex.org/W2171102181","https://openalex.org/W2172172618","https://openalex.org/W2330132183","https://openalex.org/W2481214519","https://openalex.org/W2917431650"],"related_works":["https://openalex.org/W2039902448","https://openalex.org/W2093455199","https://openalex.org/W2091386277","https://openalex.org/W2902786401","https://openalex.org/W2149260042","https://openalex.org/W2106572290","https://openalex.org/W2414908790","https://openalex.org/W2117543586","https://openalex.org/W3207607568","https://openalex.org/W2078534859"],"abstract_inverted_index":{"MOTIVATION:":[0],"Quantitative":[1],"experimental":[2],"analyses":[3],"of":[4,15,29,36,59,80,84,89,107,119,126,129,143,163,168,177,188],"the":[5,23,44,48,86,127,160,169,175,191],"nuclear":[6,19,132],"interior":[7],"reveal":[8],"a":[9,74,78,113,123,151,178],"morphologically":[10],"structured":[11],"yet":[12],"dynamic":[13],"mix":[14],"membraneless":[16],"compartments.":[17,32,136,170],"Major":[18],"events":[20],"depend":[21],"on":[22,77],"functional":[24],"integrity":[25],"and":[26,65,101,146,148],"timely":[27],"assembly":[28],"these":[30],"intra-nuclear":[31,63,87,135],"Yet,":[33],"unknown":[34],"drivers":[35],"protein":[37,94,96,102],"mobility":[38],"ensure":[39],"that":[40,194],"they":[41,51],"are":[42,52,110],"in":[43,68,141,166],"right":[45],"place":[46],"at":[47],"time":[49],"when":[50],"needed.":[53],"RESULTS:":[54],"This":[55],"study":[56],"investigates":[57],"determinants":[58],"associations":[60],"between":[61],"eight":[62],"compartments":[64],"their":[66],"proteins":[67,133],"heterogeneous":[69],"genome-wide":[70],"data.":[71,104],"We":[72,121,171],"develop":[73],"model":[75,92,109],"based":[76],"range":[79,187],"candidate":[81],"determinants,":[82],"capable":[83],"mapping":[85],"organization":[88],"proteins.":[90],"The":[91,105],"integrates":[93],"interactions,":[95],"domains,":[97,147],"post-translational":[98],"modification":[99],"sites":[100],"sequence":[103],"predictions":[106],"our":[108],"accurate":[111],"with":[112,134,150,184],"mean":[114],"AUC":[115],"(over":[116],"all":[117],"compartments)":[118],"0.71.":[120],"present":[122],"complete":[124],"map":[125],"association":[128],"3567":[130],"mouse":[131],"Each":[137],"decision":[138],"is":[139],"explained":[140],"terms":[142],"essential":[144],"interactions":[145],"qualified":[149],"false":[152],"discovery":[153],"assessment.":[154],"Using":[155],"this":[156],"resource,":[157],"we":[158],"uncover":[159],"collective":[161],"role":[162],"transcription":[164,189],"factors":[165],"each":[167],"create":[172],"diagrams":[173],"illustrating":[174],"outcomes":[176],"Gene":[179],"Ontology":[180],"enrichment":[181],"analysis.":[182],"Associated":[183],"an":[185],"extensive":[186],"factors,":[190],"analysis":[192],"suggests":[193],"PML":[195],"bodies":[196],"coordinate":[197],"regulatory":[198],"immune":[199],"responses.":[200]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":5}],"updated_date":"2026-06-16T07:32:37.131356","created_date":"2025-10-10T00:00:00"}
