{"id":"https://openalex.org/W2123128942","doi":"https://doi.org/10.1093/bioinformatics/btr184","title":"Comrad: detection of expressed rearrangements by integrated analysis of RNA-Seq and low coverage genome sequence data","display_name":"Comrad: detection of expressed rearrangements by integrated analysis of RNA-Seq and low coverage genome sequence data","publication_year":2011,"publication_date":"2011-04-09","ids":{"openalex":"https://openalex.org/W2123128942","doi":"https://doi.org/10.1093/bioinformatics/btr184","mag":"2123128942","pmid":"https://pubmed.ncbi.nlm.nih.gov/21478487"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btr184","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr184","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5050657151","display_name":"Andrew McPherson","orcid":"https://orcid.org/0000-0002-5654-5101"},"institutions":[{"id":"https://openalex.org/I1289530486","display_name":"BC Cancer Agency","ror":"https://ror.org/03sfybe47","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1289530486"]},{"id":"https://openalex.org/I18014758","display_name":"Simon Fraser University","ror":"https://ror.org/0213rcc28","country_code":"CA","type":"education","lineage":["https://openalex.org/I18014758"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Andrew McPherson","raw_affiliation_strings":["1 School of Computing Science, Simon Fraser University, 8888 University Way, Burnaby, BC V5A 1S6, 2BC Cancer Agency, 600th Avenue West, Vancouver, BC V5Z 4E6 and 3Vancouver Prostate Centre, 899 12th Avenue West, Vancouver, BC V5Z 1M9, Canada"],"affiliations":[{"raw_affiliation_string":"1 School of Computing Science, Simon Fraser University, 8888 University Way, Burnaby, BC V5A 1S6, 2BC Cancer Agency, 600th Avenue West, Vancouver, BC V5Z 4E6 and 3Vancouver Prostate Centre, 899 12th Avenue West, Vancouver, BC V5Z 1M9, Canada","institution_ids":["https://openalex.org/I1289530486","https://openalex.org/I18014758"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103449351","display_name":"Chunxiao Wu","orcid":null},"institutions":[{"id":"https://openalex.org/I18014758","display_name":"Simon Fraser University","ror":"https://ror.org/0213rcc28","country_code":"CA","type":"education","lineage":["https://openalex.org/I18014758"]},{"id":"https://openalex.org/I1289530486","display_name":"BC Cancer Agency","ror":"https://ror.org/03sfybe47","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1289530486"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Chunxiao Wu","raw_affiliation_strings":["1 School of Computing Science, Simon Fraser University, 8888 University Way, Burnaby, BC V5A 1S6, 2BC Cancer Agency, 600th Avenue West, Vancouver, BC V5Z 4E6 and 3Vancouver Prostate Centre, 899 12th Avenue West, Vancouver, BC V5Z 1M9, Canada"],"affiliations":[{"raw_affiliation_string":"1 School of Computing Science, Simon Fraser University, 8888 University Way, Burnaby, BC V5A 1S6, 2BC Cancer Agency, 600th Avenue West, Vancouver, BC V5Z 4E6 and 3Vancouver Prostate Centre, 899 12th Avenue West, Vancouver, BC V5Z 1M9, Canada","institution_ids":["https://openalex.org/I1289530486","https://openalex.org/I18014758"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068064308","display_name":"Iman Hajirasouliha","orcid":"https://orcid.org/0000-0002-0600-3371"},"institutions":[{"id":"https://openalex.org/I18014758","display_name":"Simon Fraser University","ror":"https://ror.org/0213rcc28","country_code":"CA","type":"education","lineage":["https://openalex.org/I18014758"]},{"id":"https://openalex.org/I1289530486","display_name":"BC Cancer Agency","ror":"https://ror.org/03sfybe47","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1289530486"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Iman Hajirasouliha","raw_affiliation_strings":["1 School of Computing Science, Simon Fraser University, 8888 University Way, Burnaby, BC V5A 1S6, 2BC Cancer Agency, 600th Avenue West, Vancouver, BC V5Z 4E6 and 3Vancouver Prostate Centre, 899 12th Avenue West, Vancouver, BC V5Z 1M9, Canada"],"affiliations":[{"raw_affiliation_string":"1 School of Computing Science, Simon Fraser University, 8888 University Way, Burnaby, BC V5A 1S6, 2BC Cancer Agency, 600th Avenue West, Vancouver, BC V5Z 4E6 and 3Vancouver Prostate Centre, 899 12th Avenue West, Vancouver, BC V5Z 1M9, Canada","institution_ids":["https://openalex.org/I1289530486","https://openalex.org/I18014758"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005747594","display_name":"Fereydoun Hormozdiari","orcid":"https://orcid.org/0000-0003-2703-9274"},"institutions":[{"id":"https://openalex.org/I1289530486","display_name":"BC Cancer Agency","ror":"https://ror.org/03sfybe47","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1289530486"]},{"id":"https://openalex.org/I18014758","display_name":"Simon Fraser University","ror":"https://ror.org/0213rcc28","country_code":"CA","type":"education","lineage":["https://openalex.org/I18014758"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Fereydoun Hormozdiari","raw_affiliation_strings":["1 School of Computing Science, Simon Fraser University, 8888 University Way, Burnaby, BC V5A 1S6, 2BC Cancer Agency, 600th Avenue West, Vancouver, BC V5Z 4E6 and 3Vancouver Prostate Centre, 899 12th Avenue West, Vancouver, BC V5Z 1M9, Canada"],"affiliations":[{"raw_affiliation_string":"1 School of Computing Science, Simon Fraser University, 8888 University Way, Burnaby, BC V5A 1S6, 2BC Cancer Agency, 600th Avenue West, Vancouver, BC V5Z 4E6 and 3Vancouver Prostate Centre, 899 12th Avenue West, Vancouver, BC V5Z 1M9, Canada","institution_ids":["https://openalex.org/I1289530486","https://openalex.org/I18014758"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006644128","display_name":"Faraz Hach","orcid":"https://orcid.org/0000-0003-1143-0172"},"institutions":[{"id":"https://openalex.org/I1289530486","display_name":"BC Cancer Agency","ror":"https://ror.org/03sfybe47","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1289530486"]},{"id":"https://openalex.org/I18014758","display_name":"Simon Fraser University","ror":"https://ror.org/0213rcc28","country_code":"CA","type":"education","lineage":["https://openalex.org/I18014758"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Faraz Hach","raw_affiliation_strings":["1 School of Computing Science, Simon Fraser University, 8888 University Way, Burnaby, BC V5A 1S6, 2BC Cancer Agency, 600th Avenue West, Vancouver, BC V5Z 4E6 and 3Vancouver Prostate Centre, 899 12th Avenue West, Vancouver, BC V5Z 1M9, Canada"],"affiliations":[{"raw_affiliation_string":"1 School of Computing Science, Simon Fraser University, 8888 University Way, Burnaby, BC V5A 1S6, 2BC Cancer Agency, 600th Avenue West, Vancouver, BC V5Z 4E6 and 3Vancouver Prostate Centre, 899 12th Avenue West, Vancouver, BC V5Z 1M9, Canada","institution_ids":["https://openalex.org/I1289530486","https://openalex.org/I18014758"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112905328","display_name":"Anna Lapuk","orcid":null},"institutions":[{"id":"https://openalex.org/I1289530486","display_name":"BC Cancer Agency","ror":"https://ror.org/03sfybe47","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1289530486"]},{"id":"https://openalex.org/I18014758","display_name":"Simon Fraser University","ror":"https://ror.org/0213rcc28","country_code":"CA","type":"education","lineage":["https://openalex.org/I18014758"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Anna Lapuk","raw_affiliation_strings":["1 School of Computing Science, Simon Fraser University, 8888 University Way, Burnaby, BC V5A 1S6, 2BC Cancer Agency, 600th Avenue West, Vancouver, BC V5Z 4E6 and 3Vancouver Prostate Centre, 899 12th Avenue West, Vancouver, BC V5Z 1M9, Canada"],"affiliations":[{"raw_affiliation_string":"1 School of Computing Science, Simon Fraser University, 8888 University Way, Burnaby, BC V5A 1S6, 2BC Cancer Agency, 600th Avenue West, Vancouver, BC V5Z 4E6 and 3Vancouver Prostate Centre, 899 12th Avenue West, Vancouver, BC V5Z 1M9, Canada","institution_ids":["https://openalex.org/I1289530486","https://openalex.org/I18014758"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074031951","display_name":"Stanislav Volik","orcid":"https://orcid.org/0000-0001-8379-8887"},"institutions":[{"id":"https://openalex.org/I1289530486","display_name":"BC Cancer Agency","ror":"https://ror.org/03sfybe47","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1289530486"]},{"id":"https://openalex.org/I18014758","display_name":"Simon Fraser University","ror":"https://ror.org/0213rcc28","country_code":"CA","type":"education","lineage":["https://openalex.org/I18014758"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Stanislav Volik","raw_affiliation_strings":["1 School of Computing Science, Simon Fraser University, 8888 University Way, Burnaby, BC V5A 1S6, 2BC Cancer Agency, 600th Avenue West, Vancouver, BC V5Z 4E6 and 3Vancouver Prostate Centre, 899 12th Avenue West, Vancouver, BC V5Z 1M9, Canada"],"affiliations":[{"raw_affiliation_string":"1 School of Computing Science, Simon Fraser University, 8888 University Way, Burnaby, BC V5A 1S6, 2BC Cancer Agency, 600th Avenue West, Vancouver, BC V5Z 4E6 and 3Vancouver Prostate Centre, 899 12th Avenue West, Vancouver, BC V5Z 1M9, Canada","institution_ids":["https://openalex.org/I1289530486","https://openalex.org/I18014758"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033441782","display_name":"Sohrab P. Shah","orcid":"https://orcid.org/0000-0001-6402-523X"},"institutions":[{"id":"https://openalex.org/I18014758","display_name":"Simon Fraser University","ror":"https://ror.org/0213rcc28","country_code":"CA","type":"education","lineage":["https://openalex.org/I18014758"]},{"id":"https://openalex.org/I1289530486","display_name":"BC Cancer Agency","ror":"https://ror.org/03sfybe47","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1289530486"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Sohrab Shah","raw_affiliation_strings":["1 School of Computing Science, Simon Fraser University, 8888 University Way, Burnaby, BC V5A 1S6, 2BC Cancer Agency, 600th Avenue West, Vancouver, BC V5Z 4E6 and 3Vancouver Prostate Centre, 899 12th Avenue West, Vancouver, BC V5Z 1M9, Canada"],"affiliations":[{"raw_affiliation_string":"1 School of Computing Science, Simon Fraser University, 8888 University Way, Burnaby, BC V5A 1S6, 2BC Cancer Agency, 600th Avenue West, Vancouver, BC V5Z 4E6 and 3Vancouver Prostate Centre, 899 12th Avenue West, Vancouver, BC V5Z 1M9, Canada","institution_ids":["https://openalex.org/I1289530486","https://openalex.org/I18014758"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050325886","display_name":"Colin C. Collins","orcid":"https://orcid.org/0000-0001-6148-6110"},"institutions":[{"id":"https://openalex.org/I18014758","display_name":"Simon Fraser University","ror":"https://ror.org/0213rcc28","country_code":"CA","type":"education","lineage":["https://openalex.org/I18014758"]},{"id":"https://openalex.org/I1289530486","display_name":"BC Cancer Agency","ror":"https://ror.org/03sfybe47","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1289530486"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Colin Collins","raw_affiliation_strings":["1 School of Computing Science, Simon Fraser University, 8888 University Way, Burnaby, BC V5A 1S6, 2BC Cancer Agency, 600th Avenue West, Vancouver, BC V5Z 4E6 and 3Vancouver Prostate Centre, 899 12th Avenue West, Vancouver, BC V5Z 1M9, Canada"],"affiliations":[{"raw_affiliation_string":"1 School of Computing Science, Simon Fraser University, 8888 University Way, Burnaby, BC V5A 1S6, 2BC Cancer Agency, 600th Avenue West, Vancouver, BC V5Z 4E6 and 3Vancouver Prostate Centre, 899 12th Avenue West, Vancouver, BC V5Z 1M9, Canada","institution_ids":["https://openalex.org/I1289530486","https://openalex.org/I18014758"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5102972238","display_name":"S. Cenk \u015eahinalp","orcid":"https://orcid.org/0000-0002-2170-2808"},"institutions":[{"id":"https://openalex.org/I1289530486","display_name":"BC Cancer Agency","ror":"https://ror.org/03sfybe47","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1289530486"]},{"id":"https://openalex.org/I18014758","display_name":"Simon Fraser University","ror":"https://ror.org/0213rcc28","country_code":"CA","type":"education","lineage":["https://openalex.org/I18014758"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"S. Cenk Sahinalp","raw_affiliation_strings":["1 School of Computing Science, Simon Fraser University, 8888 University Way, Burnaby, BC V5A 1S6, 2BC Cancer Agency, 600th Avenue West, Vancouver, BC V5Z 4E6 and 3Vancouver Prostate Centre, 899 12th Avenue West, Vancouver, BC V5Z 1M9, Canada"],"affiliations":[{"raw_affiliation_string":"1 School of Computing Science, Simon Fraser University, 8888 University Way, Burnaby, BC V5A 1S6, 2BC Cancer Agency, 600th Avenue West, Vancouver, BC V5Z 4E6 and 3Vancouver Prostate Centre, 899 12th Avenue West, Vancouver, BC V5Z 1M9, Canada","institution_ids":["https://openalex.org/I1289530486","https://openalex.org/I18014758"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5050657151"],"corresponding_institution_ids":["https://openalex.org/I1289530486","https://openalex.org/I18014758"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":2.3452,"has_fulltext":false,"cited_by_count":45,"citation_normalized_percentile":{"value":0.88891442,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"27","issue":"11","first_page":"1481","last_page":"1488"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9904999732971191,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.6875140070915222},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6432623267173767},{"id":"https://openalex.org/keywords/lncap","display_name":"LNCaP","score":0.5776177644729614},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5499880909919739},{"id":"https://openalex.org/keywords/rna-seq","display_name":"RNA-Seq","score":0.4604111611843109},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.4599190950393677},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.43017494678497314},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.15551018714904785},{"id":"https://openalex.org/keywords/prostate-cancer","display_name":"Prostate cancer","score":0.1482228934764862},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.124945729970932},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.10017743706703186}],"concepts":[{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.6875140070915222},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6432623267173767},{"id":"https://openalex.org/C2779723316","wikidata":"https://www.wikidata.org/wiki/Q6459234","display_name":"LNCaP","level":4,"score":0.5776177644729614},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5499880909919739},{"id":"https://openalex.org/C107397762","wikidata":"https://www.wikidata.org/wiki/Q2542347","display_name":"RNA-Seq","level":5,"score":0.4604111611843109},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4599190950393677},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.43017494678497314},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.15551018714904785},{"id":"https://openalex.org/C2780192828","wikidata":"https://www.wikidata.org/wiki/Q181257","display_name":"Prostate cancer","level":3,"score":0.1482228934764862},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.124945729970932},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.10017743706703186}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012326","descriptor_name":"RNA Splicing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012326","descriptor_name":"RNA Splicing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012326","descriptor_name":"RNA Splicing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D045744","descriptor_name":"Cell Line, Tumor","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D045744","descriptor_name":"Cell Line, Tumor","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D045744","descriptor_name":"Cell Line, Tumor","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D050506","descriptor_name":"Mutant Chimeric Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D050506","descriptor_name":"Mutant Chimeric Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D050506","descriptor_name":"Mutant Chimeric Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D050506","descriptor_name":"Mutant Chimeric Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D050506","descriptor_name":"Mutant Chimeric Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D050506","descriptor_name":"Mutant Chimeric Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D050939","descriptor_name":"Gene Fusion","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D050939","descriptor_name":"Gene Fusion","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D050939","descriptor_name":"Gene Fusion","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056905","descriptor_name":"Chromosome Breakpoints","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056905","descriptor_name":"Chromosome Breakpoints","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056905","descriptor_name":"Chromosome Breakpoints","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btr184","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr184","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:21478487","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21478487","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:open-archive.highwire.org:bioinfo:27/11/1481","is_oa":false,"landing_page_url":"http://bioinformatics.oxfordjournals.org/cgi/content/short/27/11/1481","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being","score":0.4099999964237213}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":43,"referenced_works":["https://openalex.org/W1523139359","https://openalex.org/W1970068346","https://openalex.org/W1972250756","https://openalex.org/W1981509058","https://openalex.org/W1998593414","https://openalex.org/W2016371780","https://openalex.org/W2024503898","https://openalex.org/W2024528333","https://openalex.org/W2027963144","https://openalex.org/W2029623390","https://openalex.org/W2036969473","https://openalex.org/W2055185462","https://openalex.org/W2057073871","https://openalex.org/W2061619281","https://openalex.org/W2064469303","https://openalex.org/W2065817684","https://openalex.org/W2081265282","https://openalex.org/W2082534286","https://openalex.org/W2096525273","https://openalex.org/W2096884903","https://openalex.org/W2107688500","https://openalex.org/W2114289944","https://openalex.org/W2117716708","https://openalex.org/W2124985265","https://openalex.org/W2127640118","https://openalex.org/W2129495613","https://openalex.org/W2136145671","https://openalex.org/W2136452881","https://openalex.org/W2136810701","https://openalex.org/W2137518296","https://openalex.org/W2139216037","https://openalex.org/W2147354571","https://openalex.org/W2157160484","https://openalex.org/W2159640103","https://openalex.org/W2166422007","https://openalex.org/W2169810552","https://openalex.org/W2918025614","https://openalex.org/W4244606935","https://openalex.org/W4285719527","https://openalex.org/W4293196852","https://openalex.org/W4295253857","https://openalex.org/W6631298839","https://openalex.org/W6842402754"],"related_works":["https://openalex.org/W2379794633","https://openalex.org/W1888950333","https://openalex.org/W2023041974","https://openalex.org/W2367983981","https://openalex.org/W4254431877","https://openalex.org/W2376586311","https://openalex.org/W2363336275","https://openalex.org/W2987420353","https://openalex.org/W1491897707","https://openalex.org/W1971332228"],"abstract_inverted_index":{"A":[0],"C++":[1],"and":[2],"Perl":[3],"implementation":[4],"of":[5],"the":[6],"method":[7],"demonstrated":[8],"in":[9],"this":[10],"article":[11],"is":[12],"available":[13],"at":[14],"http://compbio.cs.sfu.ca/.":[15]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":6},{"year":2016,"cited_by_count":6},{"year":2015,"cited_by_count":5},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":4},{"year":2012,"cited_by_count":9}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
