{"id":"https://openalex.org/W2095869976","doi":"https://doi.org/10.1093/bioinformatics/btr164","title":"Reasoning with bio-ontologies: using relational closure rules to enable practical querying","display_name":"Reasoning with bio-ontologies: using relational closure rules to enable practical querying","publication_year":2011,"publication_date":"2011-04-05","ids":{"openalex":"https://openalex.org/W2095869976","doi":"https://doi.org/10.1093/bioinformatics/btr164","mag":"2095869976","pmid":"https://pubmed.ncbi.nlm.nih.gov/21471019"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btr164","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr164","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/11/1562/48862083/bioinformatics_27_11_1562.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/27/11/1562/48862083/bioinformatics_27_11_1562.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5083985501","display_name":"Ward Blond\u00e9","orcid":"https://orcid.org/0000-0001-7624-4069"},"institutions":[{"id":"https://openalex.org/I32597200","display_name":"Ghent University","ror":"https://ror.org/00cv9y106","country_code":"BE","type":"education","lineage":["https://openalex.org/I32597200"]},{"id":"https://openalex.org/I204778367","display_name":"Norwegian University of Science and Technology","ror":"https://ror.org/05xg72x27","country_code":"NO","type":"education","lineage":["https://openalex.org/I204778367"]}],"countries":["BE","NO"],"is_corresponding":true,"raw_author_name":"Ward Blond\u00e9","raw_affiliation_strings":["1 Department of Applied Mathematics, Biometrics and Process Control, Ghent University, Coupure links 653, 9000 Gent, Belgium and 2Department of Biology, Norwegian University of Science and Technology, Trondheim, Norway"],"affiliations":[{"raw_affiliation_string":"1 Department of Applied Mathematics, Biometrics and Process Control, Ghent University, Coupure links 653, 9000 Gent, Belgium and 2Department of Biology, Norwegian University of Science and Technology, Trondheim, Norway","institution_ids":["https://openalex.org/I204778367","https://openalex.org/I32597200"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080056836","display_name":"Vladimir Mironov","orcid":"https://orcid.org/0000-0002-9454-5823"},"institutions":[{"id":"https://openalex.org/I204778367","display_name":"Norwegian University of Science and Technology","ror":"https://ror.org/05xg72x27","country_code":"NO","type":"education","lineage":["https://openalex.org/I204778367"]},{"id":"https://openalex.org/I32597200","display_name":"Ghent University","ror":"https://ror.org/00cv9y106","country_code":"BE","type":"education","lineage":["https://openalex.org/I32597200"]}],"countries":["BE","NO"],"is_corresponding":false,"raw_author_name":"Vladimir Mironov","raw_affiliation_strings":["1 Department of Applied Mathematics, Biometrics and Process Control, Ghent University, Coupure links 653, 9000 Gent, Belgium and 2Department of Biology, Norwegian University of Science and Technology, Trondheim, Norway"],"affiliations":[{"raw_affiliation_string":"1 Department of Applied Mathematics, Biometrics and Process Control, Ghent University, Coupure links 653, 9000 Gent, Belgium and 2Department of Biology, Norwegian University of Science and Technology, Trondheim, Norway","institution_ids":["https://openalex.org/I204778367","https://openalex.org/I32597200"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008629865","display_name":"Aravind Venkatesan","orcid":"https://orcid.org/0000-0003-4019-1940"},"institutions":[{"id":"https://openalex.org/I204778367","display_name":"Norwegian University of Science and Technology","ror":"https://ror.org/05xg72x27","country_code":"NO","type":"education","lineage":["https://openalex.org/I204778367"]},{"id":"https://openalex.org/I32597200","display_name":"Ghent University","ror":"https://ror.org/00cv9y106","country_code":"BE","type":"education","lineage":["https://openalex.org/I32597200"]}],"countries":["BE","NO"],"is_corresponding":false,"raw_author_name":"Aravind Venkatesan","raw_affiliation_strings":["1 Department of Applied Mathematics, Biometrics and Process Control, Ghent University, Coupure links 653, 9000 Gent, Belgium and 2Department of Biology, Norwegian University of Science and Technology, Trondheim, Norway"],"affiliations":[{"raw_affiliation_string":"1 Department of Applied Mathematics, Biometrics and Process Control, Ghent University, Coupure links 653, 9000 Gent, Belgium and 2Department of Biology, Norwegian University of Science and Technology, Trondheim, Norway","institution_ids":["https://openalex.org/I204778367","https://openalex.org/I32597200"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059590876","display_name":"Erick Antezana","orcid":"https://orcid.org/0000-0002-2497-8236"},"institutions":[{"id":"https://openalex.org/I204778367","display_name":"Norwegian University of Science and Technology","ror":"https://ror.org/05xg72x27","country_code":"NO","type":"education","lineage":["https://openalex.org/I204778367"]},{"id":"https://openalex.org/I32597200","display_name":"Ghent University","ror":"https://ror.org/00cv9y106","country_code":"BE","type":"education","lineage":["https://openalex.org/I32597200"]}],"countries":["BE","NO"],"is_corresponding":false,"raw_author_name":"Erick Antezana","raw_affiliation_strings":["1 Department of Applied Mathematics, Biometrics and Process Control, Ghent University, Coupure links 653, 9000 Gent, Belgium and 2Department of Biology, Norwegian University of Science and Technology, Trondheim, Norway"],"affiliations":[{"raw_affiliation_string":"1 Department of Applied Mathematics, Biometrics and Process Control, Ghent University, Coupure links 653, 9000 Gent, Belgium and 2Department of Biology, Norwegian University of Science and Technology, Trondheim, Norway","institution_ids":["https://openalex.org/I204778367","https://openalex.org/I32597200"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012437460","display_name":"Bernard De Baets","orcid":"https://orcid.org/0000-0002-3876-620X"},"institutions":[{"id":"https://openalex.org/I204778367","display_name":"Norwegian University of Science and Technology","ror":"https://ror.org/05xg72x27","country_code":"NO","type":"education","lineage":["https://openalex.org/I204778367"]},{"id":"https://openalex.org/I32597200","display_name":"Ghent University","ror":"https://ror.org/00cv9y106","country_code":"BE","type":"education","lineage":["https://openalex.org/I32597200"]}],"countries":["BE","NO"],"is_corresponding":false,"raw_author_name":"Bernard De Baets","raw_affiliation_strings":["1 Department of Applied Mathematics, Biometrics and Process Control, Ghent University, Coupure links 653, 9000 Gent, Belgium and 2Department of Biology, Norwegian University of Science and Technology, Trondheim, Norway"],"affiliations":[{"raw_affiliation_string":"1 Department of Applied Mathematics, Biometrics and Process Control, Ghent University, Coupure links 653, 9000 Gent, Belgium and 2Department of Biology, Norwegian University of Science and Technology, Trondheim, Norway","institution_ids":["https://openalex.org/I204778367","https://openalex.org/I32597200"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5077915624","display_name":"Martin Kuiper","orcid":"https://orcid.org/0000-0002-1171-9876"},"institutions":[{"id":"https://openalex.org/I32597200","display_name":"Ghent University","ror":"https://ror.org/00cv9y106","country_code":"BE","type":"education","lineage":["https://openalex.org/I32597200"]},{"id":"https://openalex.org/I204778367","display_name":"Norwegian University of Science and Technology","ror":"https://ror.org/05xg72x27","country_code":"NO","type":"education","lineage":["https://openalex.org/I204778367"]}],"countries":["BE","NO"],"is_corresponding":false,"raw_author_name":"Martin Kuiper","raw_affiliation_strings":["1 Department of Applied Mathematics, Biometrics and Process Control, Ghent University, Coupure links 653, 9000 Gent, Belgium and 2Department of Biology, Norwegian University of Science and Technology, Trondheim, Norway"],"affiliations":[{"raw_affiliation_string":"1 Department of Applied Mathematics, Biometrics and Process Control, Ghent University, Coupure links 653, 9000 Gent, Belgium and 2Department of Biology, Norwegian University of Science and Technology, Trondheim, Norway","institution_ids":["https://openalex.org/I204778367","https://openalex.org/I32597200"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5083985501"],"corresponding_institution_ids":["https://openalex.org/I204778367","https://openalex.org/I32597200"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":2.4014,"has_fulltext":true,"cited_by_count":32,"citation_normalized_percentile":{"value":0.89077946,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"27","issue":"11","first_page":"1562","last_page":"1568"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9923999905586243,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8187434077262878},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.7180166244506836},{"id":"https://openalex.org/keywords/open-biomedical-ontologies","display_name":"Open Biomedical Ontologies","score":0.6809241771697998},{"id":"https://openalex.org/keywords/idef5","display_name":"IDEF5","score":0.6074264645576477},{"id":"https://openalex.org/keywords/relation","display_name":"Relation (database)","score":0.579979419708252},{"id":"https://openalex.org/keywords/knowledge-base","display_name":"Knowledge base","score":0.5751791000366211},{"id":"https://openalex.org/keywords/knowledge-representation-and-reasoning","display_name":"Knowledge representation and reasoning","score":0.5456720590591431},{"id":"https://openalex.org/keywords/rdf","display_name":"RDF","score":0.520721971988678},{"id":"https://openalex.org/keywords/vocabulary","display_name":"Vocabulary","score":0.5203599333763123},{"id":"https://openalex.org/keywords/description-logic","display_name":"Description logic","score":0.5103098750114441},{"id":"https://openalex.org/keywords/semantics","display_name":"Semantics (computer science)","score":0.48222100734710693},{"id":"https://openalex.org/keywords/web-ontology-language","display_name":"Web Ontology Language","score":0.4699084162712097},{"id":"https://openalex.org/keywords/ontology-language","display_name":"Ontology language","score":0.45003435015678406},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.44193053245544434},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.4257745146751404},{"id":"https://openalex.org/keywords/controlled-vocabulary","display_name":"Controlled vocabulary","score":0.42469531297683716},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4233560562133789},{"id":"https://openalex.org/keywords/ontology-components","display_name":"Ontology components","score":0.4145581126213074},{"id":"https://openalex.org/keywords/process-ontology","display_name":"Process ontology","score":0.31795793771743774},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.2256743311882019},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.19833016395568848},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.1966749131679535},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.16320538520812988},{"id":"https://openalex.org/keywords/suggested-upper-merged-ontology","display_name":"Suggested Upper Merged Ontology","score":0.15872547030448914}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8187434077262878},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.7180166244506836},{"id":"https://openalex.org/C137982476","wikidata":"https://www.wikidata.org/wiki/Q7072326","display_name":"Open Biomedical Ontologies","level":5,"score":0.6809241771697998},{"id":"https://openalex.org/C118248724","wikidata":"https://www.wikidata.org/wiki/Q5969997","display_name":"IDEF5","level":4,"score":0.6074264645576477},{"id":"https://openalex.org/C25343380","wikidata":"https://www.wikidata.org/wiki/Q277521","display_name":"Relation (database)","level":2,"score":0.579979419708252},{"id":"https://openalex.org/C4554734","wikidata":"https://www.wikidata.org/wiki/Q593744","display_name":"Knowledge base","level":2,"score":0.5751791000366211},{"id":"https://openalex.org/C161301231","wikidata":"https://www.wikidata.org/wiki/Q3478658","display_name":"Knowledge representation and reasoning","level":2,"score":0.5456720590591431},{"id":"https://openalex.org/C147497476","wikidata":"https://www.wikidata.org/wiki/Q54872","display_name":"RDF","level":3,"score":0.520721971988678},{"id":"https://openalex.org/C2777601683","wikidata":"https://www.wikidata.org/wiki/Q6499736","display_name":"Vocabulary","level":2,"score":0.5203599333763123},{"id":"https://openalex.org/C102993220","wikidata":"https://www.wikidata.org/wiki/Q387196","display_name":"Description logic","level":2,"score":0.5103098750114441},{"id":"https://openalex.org/C184337299","wikidata":"https://www.wikidata.org/wiki/Q1437428","display_name":"Semantics (computer science)","level":2,"score":0.48222100734710693},{"id":"https://openalex.org/C101230327","wikidata":"https://www.wikidata.org/wiki/Q826165","display_name":"Web Ontology Language","level":3,"score":0.4699084162712097},{"id":"https://openalex.org/C61673122","wikidata":"https://www.wikidata.org/wiki/Q7095059","display_name":"Ontology language","level":3,"score":0.45003435015678406},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.44193053245544434},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.4257745146751404},{"id":"https://openalex.org/C110615152","wikidata":"https://www.wikidata.org/wiki/Q1469824","display_name":"Controlled vocabulary","level":2,"score":0.42469531297683716},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4233560562133789},{"id":"https://openalex.org/C154210476","wikidata":"https://www.wikidata.org/wiki/Q7095057","display_name":"Ontology components","level":5,"score":0.4145581126213074},{"id":"https://openalex.org/C137003198","wikidata":"https://www.wikidata.org/wiki/Q7247296","display_name":"Process ontology","level":3,"score":0.31795793771743774},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.2256743311882019},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.19833016395568848},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.1966749131679535},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.16320538520812988},{"id":"https://openalex.org/C50971890","wikidata":"https://www.wikidata.org/wiki/Q7635093","display_name":"Suggested Upper Merged Ontology","level":4,"score":0.15872547030448914},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D008128","descriptor_name":"Logic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008128","descriptor_name":"Logic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008128","descriptor_name":"Logic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btr164","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr164","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/11/1562/48862083/bioinformatics_27_11_1562.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:21471019","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21471019","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:archive.ugent.be:2135604","is_oa":false,"landing_page_url":"https://biblio.ugent.be/publication/2135604","pdf_url":null,"source":{"id":"https://openalex.org/S4306400478","display_name":"Ghent University Academic Bibliography (Ghent University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I32597200","host_organization_name":"Ghent University","host_organization_lineage":["https://openalex.org/I32597200"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ISSN: 1367-4803","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:open-archive.highwire.org:bioinfo:27/11/1562","is_oa":false,"landing_page_url":"http://bioinformatics.oxfordjournals.org/cgi/content/short/27/11/1562","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btr164","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr164","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/11/1562/48862083/bioinformatics_27_11_1562.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/12","display_name":"Responsible consumption and production","score":0.41999998688697815}],"awards":[],"funders":[{"id":"https://openalex.org/F4320320301","display_name":"European Science Foundation","ror":"https://ror.org/04esata81"},{"id":"https://openalex.org/F4320338080","display_name":"European Social Fund","ror":"https://ror.org/00k4n6c32"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2095869976.pdf","grobid_xml":"https://content.openalex.org/works/W2095869976.grobid-xml"},"referenced_works_count":32,"referenced_works":["https://openalex.org/W1501546233","https://openalex.org/W1522703371","https://openalex.org/W1555563750","https://openalex.org/W1968918513","https://openalex.org/W1990890881","https://openalex.org/W1998671175","https://openalex.org/W2050554833","https://openalex.org/W2086281195","https://openalex.org/W2096525273","https://openalex.org/W2096939566","https://openalex.org/W2103017472","https://openalex.org/W2103260426","https://openalex.org/W2108984894","https://openalex.org/W2113142309","https://openalex.org/W2114049512","https://openalex.org/W2124890217","https://openalex.org/W2129994470","https://openalex.org/W2131660156","https://openalex.org/W2136539307","https://openalex.org/W2146827200","https://openalex.org/W2161062388","https://openalex.org/W2163040665","https://openalex.org/W2163670493","https://openalex.org/W2165685472","https://openalex.org/W2169049983","https://openalex.org/W2171672270","https://openalex.org/W2772934464","https://openalex.org/W3146347964","https://openalex.org/W4211208250","https://openalex.org/W4231041617","https://openalex.org/W6630000427","https://openalex.org/W6631403149"],"related_works":["https://openalex.org/W1801798365","https://openalex.org/W2942194862","https://openalex.org/W4290780032","https://openalex.org/W1494571806","https://openalex.org/W7091809","https://openalex.org/W1506177826","https://openalex.org/W2403240707","https://openalex.org/W4232959661","https://openalex.org/W2483665239","https://openalex.org/W4235157260"],"abstract_inverted_index":{"SPARUL":[0],"code,":[1],"a":[2],"query":[3],"end":[4],"point":[5],"and":[6,14],"curated":[7],"relation":[8],"types":[9],"in":[10],"OBO":[11],"Format,":[12],"RDF":[13],"OWL":[15],"2":[16],"DL":[17],"are":[18],"freely":[19],"available":[20],"at":[21],"http://www.semantic-systems-biology.org/metarel.":[22]},"counts_by_year":[{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":4},{"year":2016,"cited_by_count":4},{"year":2014,"cited_by_count":5},{"year":2013,"cited_by_count":5},{"year":2012,"cited_by_count":7}],"updated_date":"2026-04-03T22:45:19.894376","created_date":"2025-10-10T00:00:00"}
