{"id":"https://openalex.org/W2120550036","doi":"https://doi.org/10.1093/bioinformatics/btr160","title":"MRSD: a web server for Metabolic Route Search and Design","display_name":"MRSD: a web server for Metabolic Route Search and Design","publication_year":2011,"publication_date":"2011-03-30","ids":{"openalex":"https://openalex.org/W2120550036","doi":"https://doi.org/10.1093/bioinformatics/btr160","mag":"2120550036","pmid":"https://pubmed.ncbi.nlm.nih.gov/21450713"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btr160","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr160","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/11/1581/48862011/bioinformatics_27_11_1581.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/27/11/1581/48862011/bioinformatics_27_11_1581.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5076144487","display_name":"Deguo Xia","orcid":"https://orcid.org/0000-0003-3366-2230"},"institutions":[{"id":"https://openalex.org/I126520041","display_name":"University of Science and Technology of China","ror":"https://ror.org/04c4dkn09","country_code":"CN","type":"education","lineage":["https://openalex.org/I126520041","https://openalex.org/I19820366"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Deguo Xia","raw_affiliation_strings":["1 School of Computer Science and Technology and 2Department of Systems Biology, University of Science and Technology of China, Hefei 230026, PR China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 School of Computer Science and Technology and 2Department of Systems Biology, University of Science and Technology of China, Hefei 230026, PR China","institution_ids":["https://openalex.org/I126520041"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101802065","display_name":"Haoran Zheng","orcid":"https://orcid.org/0000-0001-7442-6299"},"institutions":[{"id":"https://openalex.org/I126520041","display_name":"University of Science and Technology of China","ror":"https://ror.org/04c4dkn09","country_code":"CN","type":"education","lineage":["https://openalex.org/I126520041","https://openalex.org/I19820366"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Haoran Zheng","raw_affiliation_strings":["1 School of Computer Science and Technology and 2Department of Systems Biology, University of Science and Technology of China, Hefei 230026, PR China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 School of Computer Science and Technology and 2Department of Systems Biology, University of Science and Technology of China, Hefei 230026, PR China","institution_ids":["https://openalex.org/I126520041"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100677600","display_name":"Zhiqiang Liu","orcid":"https://orcid.org/0000-0002-8150-8716"},"institutions":[{"id":"https://openalex.org/I126520041","display_name":"University of Science and Technology of China","ror":"https://ror.org/04c4dkn09","country_code":"CN","type":"education","lineage":["https://openalex.org/I126520041","https://openalex.org/I19820366"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhiqiang Liu","raw_affiliation_strings":["1 School of Computer Science and Technology and 2Department of Systems Biology, University of Science and Technology of China, Hefei 230026, PR China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 School of Computer Science and Technology and 2Department of Systems Biology, University of Science and Technology of China, Hefei 230026, PR China","institution_ids":["https://openalex.org/I126520041"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013446276","display_name":"Guisheng Li","orcid":"https://orcid.org/0000-0002-4522-8936"},"institutions":[{"id":"https://openalex.org/I126520041","display_name":"University of Science and Technology of China","ror":"https://ror.org/04c4dkn09","country_code":"CN","type":"education","lineage":["https://openalex.org/I126520041","https://openalex.org/I19820366"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Guisheng Li","raw_affiliation_strings":["1 School of Computer Science and Technology and 2Department of Systems Biology, University of Science and Technology of China, Hefei 230026, PR China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 School of Computer Science and Technology and 2Department of Systems Biology, University of Science and Technology of China, Hefei 230026, PR China","institution_ids":["https://openalex.org/I126520041"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100454990","display_name":"Jinlong Li","orcid":"https://orcid.org/0000-0003-2279-9506"},"institutions":[{"id":"https://openalex.org/I126520041","display_name":"University of Science and Technology of China","ror":"https://ror.org/04c4dkn09","country_code":"CN","type":"education","lineage":["https://openalex.org/I126520041","https://openalex.org/I19820366"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jinlong Li","raw_affiliation_strings":["1 School of Computer Science and Technology and 2Department of Systems Biology, University of Science and Technology of China, Hefei 230026, PR China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 School of Computer Science and Technology and 2Department of Systems Biology, University of Science and Technology of China, Hefei 230026, PR China","institution_ids":["https://openalex.org/I126520041"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074802076","display_name":"Jiong Hong","orcid":"https://orcid.org/0000-0002-4592-7083"},"institutions":[{"id":"https://openalex.org/I126520041","display_name":"University of Science and Technology of China","ror":"https://ror.org/04c4dkn09","country_code":"CN","type":"education","lineage":["https://openalex.org/I126520041","https://openalex.org/I19820366"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jiong Hong","raw_affiliation_strings":["1 School of Computer Science and Technology and 2Department of Systems Biology, University of Science and Technology of China, Hefei 230026, PR China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 School of Computer Science and Technology and 2Department of Systems Biology, University of Science and Technology of China, Hefei 230026, PR China","institution_ids":["https://openalex.org/I126520041"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101643580","display_name":"Kai Zhao","orcid":"https://orcid.org/0000-0003-3574-1215"},"institutions":[{"id":"https://openalex.org/I126520041","display_name":"University of Science and Technology of China","ror":"https://ror.org/04c4dkn09","country_code":"CN","type":"education","lineage":["https://openalex.org/I126520041","https://openalex.org/I19820366"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Kai Zhao","raw_affiliation_strings":["1 School of Computer Science and Technology and 2Department of Systems Biology, University of Science and Technology of China, Hefei 230026, PR China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 School of Computer Science and Technology and 2Department of Systems Biology, University of Science and Technology of China, Hefei 230026, PR China","institution_ids":["https://openalex.org/I126520041"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5101802065"],"corresponding_institution_ids":["https://openalex.org/I126520041"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.6557,"has_fulltext":true,"cited_by_count":21,"citation_normalized_percentile":{"value":0.68905322,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"27","issue":"11","first_page":"1581","last_page":"1582"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.2379000037908554,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.2379000037908554,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11882","display_name":"Plant biochemistry and biosynthesis","score":0.19280000030994415,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.05090000107884407,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.672084391117096},{"id":"https://openalex.org/keywords/kegg","display_name":"KEGG","score":0.6361756324768066},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.44477343559265137},{"id":"https://openalex.org/keywords/product","display_name":"Product (mathematics)","score":0.42487823963165283},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.31851330399513245},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.21026796102523804},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1906592845916748},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.07889425754547119},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.07808637619018555},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.07420861721038818}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.672084391117096},{"id":"https://openalex.org/C152724338","wikidata":"https://www.wikidata.org/wiki/Q909442","display_name":"KEGG","level":5,"score":0.6361756324768066},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.44477343559265137},{"id":"https://openalex.org/C90673727","wikidata":"https://www.wikidata.org/wiki/Q901718","display_name":"Product (mathematics)","level":2,"score":0.42487823963165283},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.31851330399513245},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.21026796102523804},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1906592845916748},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.07889425754547119},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.07808637619018555},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.07420861721038818},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.0}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btr160","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr160","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/11/1581/48862011/bioinformatics_27_11_1581.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:21450713","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21450713","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:open-archive.highwire.org:bioinfo:27/11/1581","is_oa":false,"landing_page_url":"http://bioinformatics.oxfordjournals.org/cgi/content/short/27/11/1581","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btr160","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr160","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/11/1581/48862011/bioinformatics_27_11_1581.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2120550036.pdf","grobid_xml":"https://content.openalex.org/works/W2120550036.grobid-xml"},"referenced_works_count":6,"referenced_works":["https://openalex.org/W1972549326","https://openalex.org/W2097032746","https://openalex.org/W2129860041","https://openalex.org/W2131058166","https://openalex.org/W2152776677","https://openalex.org/W2169517653"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2323581027","https://openalex.org/W2892146921","https://openalex.org/W1634075213","https://openalex.org/W2392285434","https://openalex.org/W1998110896","https://openalex.org/W2057015734","https://openalex.org/W2369317215","https://openalex.org/W2027847170","https://openalex.org/W1579977255"],"abstract_inverted_index":{"Abstract":[0],"Summary:":[1],"We":[2],"present":[3],"a":[4,31,55],"tool":[5],"called":[6],"MRSD":[7],"(Metabolic":[8],"Route":[9,70],"Search":[10,71],"and":[11,15,33,72,81],"Design)":[12],"to":[13],"search":[14,26],"design":[16,52],"routes":[17,29],"based":[18,46],"on":[19,47],"the":[20,39,82,97],"weighted":[21],"compound":[22,35,60],"transform":[23],"diagraph.":[24],"The":[25,51,65],"submodule":[27,53],"returns":[28],"between":[30],"source":[32],"product":[34],"within":[36],"seconds":[37],"in":[38,61,78],"network":[40],"of":[41],"one":[42],"or":[43],"multiple":[44],"organisms":[45],"data":[48,93],"from":[49,57],"KEGG.":[50],"designs":[54],"route":[56],"an":[58,62],"appointed":[59],"interactive":[63],"mode.":[64],"two":[66],"complementary":[67],"functions,":[68],"Metabolic":[69],"Design,":[73],"can":[74],"be":[75],"broadly":[76],"used":[77],"biosynthesis,":[79],"bio-pharmaceuticals":[80],"other":[83],"related":[84],"fields.":[85],"Availability:":[86],"bioinfo.ustc.edu.cn/softwares/MRSD/":[87],"Contact:":[88],"hrzheng@ustc.edu.cn":[89],"Supplementary":[90,92],"information:":[91],"are":[94],"available":[95],"at":[96],"Bioinformatics":[98],"online.":[99]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-06-16T07:32:37.131356","created_date":"2025-10-10T00:00:00"}
