{"id":"https://openalex.org/W2158955394","doi":"https://doi.org/10.1093/bioinformatics/btr154","title":"A novel network-based method for measuring the functional relationship between gene sets","display_name":"A novel network-based method for measuring the functional relationship between gene sets","publication_year":2011,"publication_date":"2011-03-30","ids":{"openalex":"https://openalex.org/W2158955394","doi":"https://doi.org/10.1093/bioinformatics/btr154","mag":"2158955394","pmid":"https://pubmed.ncbi.nlm.nih.gov/21450716"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btr154","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr154","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/11/1521/48861256/bioinformatics_27_11_1521.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/27/11/1521/48861256/bioinformatics_27_11_1521.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5004949006","display_name":"Qianghu Wang","orcid":"https://orcid.org/0000-0002-3488-1059"},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]},{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210106477","display_name":"Shanghai Institutes for Biological Sciences","ror":"https://ror.org/011rf9d86","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210106477"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qianghu Wang","raw_affiliation_strings":["1 College of Bioinformatics Science and Technology, Harbin Medical University, Harbin 150081 and 2Bioinformatics Center, Key Lab of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200031, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 College of Bioinformatics Science and Technology, Harbin Medical University, Harbin 150081 and 2Bioinformatics Center, Key Lab of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200031, China","institution_ids":["https://openalex.org/I4210106477","https://openalex.org/I19820366","https://openalex.org/I156144747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051881032","display_name":"Jie Sun","orcid":"https://orcid.org/0000-0002-0932-7195"},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]},{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210106477","display_name":"Shanghai Institutes for Biological Sciences","ror":"https://ror.org/011rf9d86","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210106477"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jie Sun","raw_affiliation_strings":["1 College of Bioinformatics Science and Technology, Harbin Medical University, Harbin 150081 and 2Bioinformatics Center, Key Lab of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200031, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 College of Bioinformatics Science and Technology, Harbin Medical University, Harbin 150081 and 2Bioinformatics Center, Key Lab of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200031, China","institution_ids":["https://openalex.org/I4210106477","https://openalex.org/I19820366","https://openalex.org/I156144747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024023342","display_name":"Meng Zhou","orcid":"https://orcid.org/0000-0001-9987-9024"},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]},{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210106477","display_name":"Shanghai Institutes for Biological Sciences","ror":"https://ror.org/011rf9d86","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210106477"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Meng Zhou","raw_affiliation_strings":["1 College of Bioinformatics Science and Technology, Harbin Medical University, Harbin 150081 and 2Bioinformatics Center, Key Lab of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200031, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 College of Bioinformatics Science and Technology, Harbin Medical University, Harbin 150081 and 2Bioinformatics Center, Key Lab of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200031, China","institution_ids":["https://openalex.org/I4210106477","https://openalex.org/I19820366","https://openalex.org/I156144747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102890198","display_name":"Haixiu Yang","orcid":"https://orcid.org/0000-0002-7161-1656"},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]},{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210106477","display_name":"Shanghai Institutes for Biological Sciences","ror":"https://ror.org/011rf9d86","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210106477"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Haixiu Yang","raw_affiliation_strings":["1 College of Bioinformatics Science and Technology, Harbin Medical University, Harbin 150081 and 2Bioinformatics Center, Key Lab of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200031, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 College of Bioinformatics Science and Technology, Harbin Medical University, Harbin 150081 and 2Bioinformatics Center, Key Lab of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200031, China","institution_ids":["https://openalex.org/I4210106477","https://openalex.org/I19820366","https://openalex.org/I156144747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100708580","display_name":"Yan Li","orcid":"https://orcid.org/0000-0003-1146-5578"},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]},{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210106477","display_name":"Shanghai Institutes for Biological Sciences","ror":"https://ror.org/011rf9d86","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210106477"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yan Li","raw_affiliation_strings":["1 College of Bioinformatics Science and Technology, Harbin Medical University, Harbin 150081 and 2Bioinformatics Center, Key Lab of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200031, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 College of Bioinformatics Science and Technology, Harbin Medical University, Harbin 150081 and 2Bioinformatics Center, Key Lab of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200031, China","institution_ids":["https://openalex.org/I4210106477","https://openalex.org/I19820366","https://openalex.org/I156144747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100331094","display_name":"Xiang Li","orcid":"https://orcid.org/0000-0002-9851-6376"},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]},{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210106477","display_name":"Shanghai Institutes for Biological Sciences","ror":"https://ror.org/011rf9d86","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210106477"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiang Li","raw_affiliation_strings":["1 College of Bioinformatics Science and Technology, Harbin Medical University, Harbin 150081 and 2Bioinformatics Center, Key Lab of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200031, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 College of Bioinformatics Science and Technology, Harbin Medical University, Harbin 150081 and 2Bioinformatics Center, Key Lab of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200031, China","institution_ids":["https://openalex.org/I4210106477","https://openalex.org/I19820366","https://openalex.org/I156144747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091092605","display_name":"Sali Lv","orcid":null},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]},{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210106477","display_name":"Shanghai Institutes for Biological Sciences","ror":"https://ror.org/011rf9d86","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210106477"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xiang Li","raw_affiliation_strings":["1 College of Bioinformatics Science and Technology, Harbin Medical University, Harbin 150081 and 2Bioinformatics Center, Key Lab of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200031, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 College of Bioinformatics Science and Technology, Harbin Medical University, Harbin 150081 and 2Bioinformatics Center, Key Lab of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200031, China","institution_ids":["https://openalex.org/I4210106477","https://openalex.org/I19820366","https://openalex.org/I156144747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091092605","display_name":"Sali Lv","orcid":null},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]},{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210106477","display_name":"Shanghai Institutes for Biological Sciences","ror":"https://ror.org/011rf9d86","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210106477"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Sali Lv","raw_affiliation_strings":["1 College of Bioinformatics Science and Technology, Harbin Medical University, Harbin 150081 and 2Bioinformatics Center, Key Lab of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200031, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 College of Bioinformatics Science and Technology, Harbin Medical University, Harbin 150081 and 2Bioinformatics Center, Key Lab of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200031, China","institution_ids":["https://openalex.org/I4210106477","https://openalex.org/I19820366","https://openalex.org/I156144747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008280608","display_name":"Yixue Li","orcid":"https://orcid.org/0000-0002-1198-7176"},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]},{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210106477","display_name":"Shanghai Institutes for Biological Sciences","ror":"https://ror.org/011rf9d86","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210106477"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xia Li","raw_affiliation_strings":["1 College of Bioinformatics Science and Technology, Harbin Medical University, Harbin 150081 and 2Bioinformatics Center, Key Lab of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200031, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 College of Bioinformatics Science and Technology, Harbin Medical University, Harbin 150081 and 2Bioinformatics Center, Key Lab of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200031, China","institution_ids":["https://openalex.org/I4210106477","https://openalex.org/I19820366","https://openalex.org/I156144747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100445596","display_name":"Xia Li","orcid":"https://orcid.org/0000-0002-9794-2648"},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]},{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210106477","display_name":"Shanghai Institutes for Biological Sciences","ror":"https://ror.org/011rf9d86","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210106477"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xia Li","raw_affiliation_strings":["1 College of Bioinformatics Science and Technology, Harbin Medical University, Harbin 150081 and 2Bioinformatics Center, Key Lab of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200031, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 College of Bioinformatics Science and Technology, Harbin Medical University, Harbin 150081 and 2Bioinformatics Center, Key Lab of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200031, China","institution_ids":["https://openalex.org/I4210106477","https://openalex.org/I19820366","https://openalex.org/I156144747"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5008280608","display_name":"Yixue Li","orcid":"https://orcid.org/0000-0002-1198-7176"},"institutions":[{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]},{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210106477","display_name":"Shanghai Institutes for Biological Sciences","ror":"https://ror.org/011rf9d86","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210106477"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yixue Li","raw_affiliation_strings":["1 College of Bioinformatics Science and Technology, Harbin Medical University, Harbin 150081 and 2Bioinformatics Center, Key Lab of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200031, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 College of Bioinformatics Science and Technology, Harbin Medical University, Harbin 150081 and 2Bioinformatics Center, Key Lab of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200031, China","institution_ids":["https://openalex.org/I4210106477","https://openalex.org/I19820366","https://openalex.org/I156144747"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5008280608","https://openalex.org/A5091092605"],"corresponding_institution_ids":["https://openalex.org/I156144747","https://openalex.org/I19820366","https://openalex.org/I4210106477"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.2163,"has_fulltext":true,"cited_by_count":19,"citation_normalized_percentile":{"value":0.78318381,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"27","issue":"11","first_page":"1521","last_page":"1528"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9817000031471252,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9817000031471252,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.002400000113993883,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.002300000051036477,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6367231011390686},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.5907450914382935},{"id":"https://openalex.org/keywords/functional-genomics","display_name":"Functional genomics","score":0.5599060654640198},{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.48093360662460327},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.47737619280815125},{"id":"https://openalex.org/keywords/functional-analysis","display_name":"Functional analysis","score":0.4508495032787323},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4503900706768036},{"id":"https://openalex.org/keywords/rank","display_name":"Rank (graph theory)","score":0.4138331413269043},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4011509120464325},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3628281056880951},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2899770736694336},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.2781522274017334},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.18754184246063232},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.1630016565322876},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.16291019320487976},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.09533959627151489}],"concepts":[{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6367231011390686},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5907450914382935},{"id":"https://openalex.org/C161078062","wikidata":"https://www.wikidata.org/wiki/Q1068690","display_name":"Functional genomics","level":5,"score":0.5599060654640198},{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.48093360662460327},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.47737619280815125},{"id":"https://openalex.org/C55112680","wikidata":"https://www.wikidata.org/wiki/Q190549","display_name":"Functional analysis","level":3,"score":0.4508495032787323},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4503900706768036},{"id":"https://openalex.org/C164226766","wikidata":"https://www.wikidata.org/wiki/Q7293202","display_name":"Rank (graph theory)","level":2,"score":0.4138331413269043},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4011509120464325},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3628281056880951},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2899770736694336},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.2781522274017334},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.18754184246063232},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.1630016565322876},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.16291019320487976},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.09533959627151489},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D046912","descriptor_name":"Multiprotein Complexes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D046912","descriptor_name":"Multiprotein Complexes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D046912","descriptor_name":"Multiprotein Complexes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btr154","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr154","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/11/1521/48861256/bioinformatics_27_11_1521.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:21450716","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21450716","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:open-archive.highwire.org:bioinfo:27/11/1521","is_oa":false,"landing_page_url":"http://bioinformatics.oxfordjournals.org/cgi/content/short/27/11/1521","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btr154","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr154","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/11/1521/48861256/bioinformatics_27_11_1521.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1347416899","display_name":null,"funder_award_id":"61073136","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G1664632931","display_name":null,"funder_award_id":"30871394","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4243412236","display_name":null,"funder_award_id":"863 Program","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G564225259","display_name":null,"funder_award_id":"2007AA02Z329","funder_id":"https://openalex.org/F4320335773","funder_display_name":"National High-tech Research and Development Program"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320335773","display_name":"National High-tech Research and Development Program","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2158955394.pdf","grobid_xml":"https://content.openalex.org/works/W2158955394.grobid-xml"},"referenced_works_count":52,"referenced_works":["https://openalex.org/W1517294127","https://openalex.org/W1547769073","https://openalex.org/W1659833910","https://openalex.org/W1719330231","https://openalex.org/W1872489737","https://openalex.org/W1969808215","https://openalex.org/W1997921822","https://openalex.org/W2009288597","https://openalex.org/W2022603493","https://openalex.org/W2026353653","https://openalex.org/W2036656143","https://openalex.org/W2037442572","https://openalex.org/W2039108801","https://openalex.org/W2048296798","https://openalex.org/W2057166107","https://openalex.org/W2062700640","https://openalex.org/W2078009233","https://openalex.org/W2084168100","https://openalex.org/W2088216962","https://openalex.org/W2096410350","https://openalex.org/W2096525273","https://openalex.org/W2096561521","https://openalex.org/W2097698606","https://openalex.org/W2100827857","https://openalex.org/W2102281458","https://openalex.org/W2102992354","https://openalex.org/W2103017472","https://openalex.org/W2106410227","https://openalex.org/W2122863289","https://openalex.org/W2122964432","https://openalex.org/W2123083582","https://openalex.org/W2126225210","https://openalex.org/W2128049108","https://openalex.org/W2130410032","https://openalex.org/W2130687290","https://openalex.org/W2133465414","https://openalex.org/W2137917513","https://openalex.org/W2140628921","https://openalex.org/W2141682941","https://openalex.org/W2148043260","https://openalex.org/W2157795344","https://openalex.org/W2157997136","https://openalex.org/W2158217645","https://openalex.org/W2163480486","https://openalex.org/W2163485494","https://openalex.org/W2166468869","https://openalex.org/W2166574880","https://openalex.org/W2314938037","https://openalex.org/W2916767477","https://openalex.org/W4233437719","https://openalex.org/W4250297812","https://openalex.org/W4294107304"],"related_works":["https://openalex.org/W4232901336","https://openalex.org/W2152992791","https://openalex.org/W2026230782","https://openalex.org/W2112835755","https://openalex.org/W2349674371","https://openalex.org/W4291951920","https://openalex.org/W2963262648","https://openalex.org/W2097495471","https://openalex.org/W2375480909","https://openalex.org/W1696545756"],"abstract_inverted_index":{"MOTIVATION:":[0],"In":[1,218],"the":[2,30,60,68,78,97,115,124,131,140,153,169,190,207,226,237],"functional":[3,69,98,116,132,141,146,155,170],"genomic":[4,17],"era,":[5],"a":[6,85,164,222,248],"large":[7],"number":[8],"of":[9,24,62,77,126,143,211,239],"gene":[10,22,44,47,64,72,120,136,174,229,234],"sets":[11,23,65,73,175,235],"have":[12],"been":[13],"identified":[14,149],"via":[15],"high-throughput":[16],"and":[18,37,66,100,105,148,197,205,209],"proteomic":[19],"technologies.":[20],"These":[21],"interest":[25],"are":[26,38,56],"often":[27],"related":[28],"to":[29,113,214],"same":[31,154],"or":[32,35,51,182],"similar":[33,185],"disorders":[34],"phenotypes,":[36],"commonly":[39],"presented":[40],"as":[41,232],"differentially":[42],"expressed":[43],"lists,":[45],"co-expressed":[46],"modules,":[48,230],"protein":[49,150,203,241],"complexes":[50,144,151,204,213],"signaling":[52],"pathways.":[53],"However,":[54],"biologists":[55],"still":[57],"faced":[58],"by":[59],"challenge":[61],"comparing":[63],"interpreting":[67],"relationships":[70],"between":[71,103,118,134,172,228],"into":[74,225],"an":[75,107],"understanding":[76],"underlying":[79],"biological":[80],"mechanisms.":[81],"RESULTS:":[82],"We":[83,187],"introduce":[84],"novel":[86],"network-based":[87],"method,":[88,196],"designated":[89],"corrected":[90],"cumulative":[91],"rank":[92],"score":[93],"(CCRS),":[94],"which":[95],"analyzes":[96],"communication":[99,227],"physical":[101],"interaction":[102],"genes,":[104],"presents":[106],"easy-to-use":[108],"web-based":[109],"toolkit":[110,253],"called":[111],"GsNetCom":[112,220,246],"quantify":[114],"relationship":[117,171],"two":[119,135],"sets.":[121],"To":[122],"evaluate":[123],"performance":[125],"our":[127,195],"method":[128],"in":[129,145,152,167,199],"assessing":[130],"similarity":[133],"sets,":[137],"we":[138],"analyzed":[139],"coherence":[142],"catalog":[147],"catalog.":[156],"The":[157],"results":[158],"suggested":[159],"that":[160],"CCRS":[161],"can":[162],"offer":[163],"significant":[165],"advance":[166],"addressing":[168],"different":[173],"compared":[176],"with":[177,184],"several":[178],"other":[179,215],"available":[180,250],"tools":[181],"algorithms":[183],"functionality.":[186],"also":[188],"conducted":[189],"case":[191],"study":[192],"based":[193],"on":[194],"succeeded":[198],"prioritizing":[200],"candidate":[201],"leukemia-associated":[202],"expanding":[206],"prioritization":[208],"analysis":[210],"cancer-related":[212],"cancer":[216],"types.":[217],"addition,":[219],"provides":[221],"new":[223],"insight":[224],"such":[231],"exploring":[233],"from":[236],"perspective":[238],"well-annotated":[240],"complexes.":[242],"AVAILABILITY":[243],"AND":[244],"IMPLEMENTATION:":[245],"is":[247],"freely":[249],"web":[251],"accessible":[252],"at":[254],"http://bioinfo.hrbmu.edu.cn/GsNetCom.":[255]},"counts_by_year":[{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":5},{"year":2013,"cited_by_count":4},{"year":2012,"cited_by_count":1}],"updated_date":"2026-07-20T07:56:41.581041","created_date":"2025-10-10T00:00:00"}
