{"id":"https://openalex.org/W2154513100","doi":"https://doi.org/10.1093/bioinformatics/btr153","title":"<i>PlantMiRNAPred</i>: efficient classification of real and pseudo plant pre-miRNAs","display_name":"<i>PlantMiRNAPred</i>: efficient classification of real and pseudo plant pre-miRNAs","publication_year":2011,"publication_date":"2011-03-26","ids":{"openalex":"https://openalex.org/W2154513100","doi":"https://doi.org/10.1093/bioinformatics/btr153","mag":"2154513100","pmid":"https://pubmed.ncbi.nlm.nih.gov/21441575"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btr153","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr153","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/10/1368/48861514/bioinformatics_27_10_1368.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/27/10/1368/48861514/bioinformatics_27_10_1368.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5028616130","display_name":"Ping Xuan","orcid":"https://orcid.org/0000-0001-5328-691X"},"institutions":[{"id":"https://openalex.org/I169572211","display_name":"Northeast Agricultural University","ror":"https://ror.org/0515nd386","country_code":"CN","type":"education","lineage":["https://openalex.org/I169572211"]},{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ping Xuan","raw_affiliation_strings":["1 Department of Computer Science and Engineering, Harbin Institute of Technology, Harbin 150001, 2Soybean Research Institute (Key Laboratory of Soybean Biology of Chinese Education Ministry), Northeast Agricultural University, Harbin 150030, P.R. China and 3Department of Electrical and Computer Engineering, University of Texas at San Antonio, San Antonio, TX 78249-0669, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science and Engineering, Harbin Institute of Technology, Harbin 150001, 2Soybean Research Institute (Key Laboratory of Soybean Biology of Chinese Education Ministry), Northeast Agricultural University, Harbin 150030, P.R. China and 3Department of Electrical and Computer Engineering, University of Texas at San Antonio, San Antonio, TX 78249-0669, USA","institution_ids":["https://openalex.org/I204983213","https://openalex.org/I169572211"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079800756","display_name":"Maozu Guo","orcid":"https://orcid.org/0000-0001-6228-6276"},"institutions":[{"id":"https://openalex.org/I169572211","display_name":"Northeast Agricultural University","ror":"https://ror.org/0515nd386","country_code":"CN","type":"education","lineage":["https://openalex.org/I169572211"]},{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Maozu Guo","raw_affiliation_strings":["1 Department of Computer Science and Engineering, Harbin Institute of Technology, Harbin 150001, 2Soybean Research Institute (Key Laboratory of Soybean Biology of Chinese Education Ministry), Northeast Agricultural University, Harbin 150030, P.R. China and 3Department of Electrical and Computer Engineering, University of Texas at San Antonio, San Antonio, TX 78249-0669, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science and Engineering, Harbin Institute of Technology, Harbin 150001, 2Soybean Research Institute (Key Laboratory of Soybean Biology of Chinese Education Ministry), Northeast Agricultural University, Harbin 150030, P.R. China and 3Department of Electrical and Computer Engineering, University of Texas at San Antonio, San Antonio, TX 78249-0669, USA","institution_ids":["https://openalex.org/I204983213","https://openalex.org/I169572211"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100324633","display_name":"Xiaoyan Liu","orcid":"https://orcid.org/0000-0002-0422-1711"},"institutions":[{"id":"https://openalex.org/I169572211","display_name":"Northeast Agricultural University","ror":"https://ror.org/0515nd386","country_code":"CN","type":"education","lineage":["https://openalex.org/I169572211"]},{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaoyan Liu","raw_affiliation_strings":["1 Department of Computer Science and Engineering, Harbin Institute of Technology, Harbin 150001, 2Soybean Research Institute (Key Laboratory of Soybean Biology of Chinese Education Ministry), Northeast Agricultural University, Harbin 150030, P.R. China and 3Department of Electrical and Computer Engineering, University of Texas at San Antonio, San Antonio, TX 78249-0669, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science and Engineering, Harbin Institute of Technology, Harbin 150001, 2Soybean Research Institute (Key Laboratory of Soybean Biology of Chinese Education Ministry), Northeast Agricultural University, Harbin 150030, P.R. China and 3Department of Electrical and Computer Engineering, University of Texas at San Antonio, San Antonio, TX 78249-0669, USA","institution_ids":["https://openalex.org/I204983213","https://openalex.org/I169572211"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072282199","display_name":"Yangchao Huang","orcid":"https://orcid.org/0000-0002-4377-516X"},"institutions":[{"id":"https://openalex.org/I169572211","display_name":"Northeast Agricultural University","ror":"https://ror.org/0515nd386","country_code":"CN","type":"education","lineage":["https://openalex.org/I169572211"]},{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Yangchao Huang","raw_affiliation_strings":["1 Department of Computer Science and Engineering, Harbin Institute of Technology, Harbin 150001, 2Soybean Research Institute (Key Laboratory of Soybean Biology of Chinese Education Ministry), Northeast Agricultural University, Harbin 150030, P.R. China and 3Department of Electrical and Computer Engineering, University of Texas at San Antonio, San Antonio, TX 78249-0669, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science and Engineering, Harbin Institute of Technology, Harbin 150001, 2Soybean Research Institute (Key Laboratory of Soybean Biology of Chinese Education Ministry), Northeast Agricultural University, Harbin 150030, P.R. China and 3Department of Electrical and Computer Engineering, University of Texas at San Antonio, San Antonio, TX 78249-0669, USA","institution_ids":["https://openalex.org/I204983213","https://openalex.org/I169572211"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100463015","display_name":"Wenbin Li","orcid":"https://orcid.org/0000-0003-2801-6322"},"institutions":[{"id":"https://openalex.org/I169572211","display_name":"Northeast Agricultural University","ror":"https://ror.org/0515nd386","country_code":"CN","type":"education","lineage":["https://openalex.org/I169572211"]},{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yangchao Huang","raw_affiliation_strings":["1 Department of Computer Science and Engineering, Harbin Institute of Technology, Harbin 150001, 2Soybean Research Institute (Key Laboratory of Soybean Biology of Chinese Education Ministry), Northeast Agricultural University, Harbin 150030, P.R. China and 3Department of Electrical and Computer Engineering, University of Texas at San Antonio, San Antonio, TX 78249-0669, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science and Engineering, Harbin Institute of Technology, Harbin 150001, 2Soybean Research Institute (Key Laboratory of Soybean Biology of Chinese Education Ministry), Northeast Agricultural University, Harbin 150030, P.R. China and 3Department of Electrical and Computer Engineering, University of Texas at San Antonio, San Antonio, TX 78249-0669, USA","institution_ids":["https://openalex.org/I204983213","https://openalex.org/I169572211"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068887242","display_name":"Yufei Huang","orcid":"https://orcid.org/0000-0001-6268-5357"},"institutions":[{"id":"https://openalex.org/I169572211","display_name":"Northeast Agricultural University","ror":"https://ror.org/0515nd386","country_code":"CN","type":"education","lineage":["https://openalex.org/I169572211"]},{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wenbin Li","raw_affiliation_strings":["1 Department of Computer Science and Engineering, Harbin Institute of Technology, Harbin 150001, 2Soybean Research Institute (Key Laboratory of Soybean Biology of Chinese Education Ministry), Northeast Agricultural University, Harbin 150030, P.R. China and 3Department of Electrical and Computer Engineering, University of Texas at San Antonio, San Antonio, TX 78249-0669, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science and Engineering, Harbin Institute of Technology, Harbin 150001, 2Soybean Research Institute (Key Laboratory of Soybean Biology of Chinese Education Ministry), Northeast Agricultural University, Harbin 150030, P.R. China and 3Department of Electrical and Computer Engineering, University of Texas at San Antonio, San Antonio, TX 78249-0669, USA","institution_ids":["https://openalex.org/I204983213","https://openalex.org/I169572211"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068887242","display_name":"Yufei Huang","orcid":"https://orcid.org/0000-0001-6268-5357"},"institutions":[{"id":"https://openalex.org/I169572211","display_name":"Northeast Agricultural University","ror":"https://ror.org/0515nd386","country_code":"CN","type":"education","lineage":["https://openalex.org/I169572211"]},{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Yufei Huang","raw_affiliation_strings":["1 Department of Computer Science and Engineering, Harbin Institute of Technology, Harbin 150001, 2Soybean Research Institute (Key Laboratory of Soybean Biology of Chinese Education Ministry), Northeast Agricultural University, Harbin 150030, P.R. China and 3Department of Electrical and Computer Engineering, University of Texas at San Antonio, San Antonio, TX 78249-0669, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science and Engineering, Harbin Institute of Technology, Harbin 150001, 2Soybean Research Institute (Key Laboratory of Soybean Biology of Chinese Education Ministry), Northeast Agricultural University, Harbin 150030, P.R. China and 3Department of Electrical and Computer Engineering, University of Texas at San Antonio, San Antonio, TX 78249-0669, USA","institution_ids":["https://openalex.org/I204983213","https://openalex.org/I169572211"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5068887242","display_name":"Yufei Huang","orcid":"https://orcid.org/0000-0001-6268-5357"},"institutions":[{"id":"https://openalex.org/I169572211","display_name":"Northeast Agricultural University","ror":"https://ror.org/0515nd386","country_code":"CN","type":"education","lineage":["https://openalex.org/I169572211"]},{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yufei Huang","raw_affiliation_strings":["1 Department of Computer Science and Engineering, Harbin Institute of Technology, Harbin 150001, 2Soybean Research Institute (Key Laboratory of Soybean Biology of Chinese Education Ministry), Northeast Agricultural University, Harbin 150030, P.R. China and 3Department of Electrical and Computer Engineering, University of Texas at San Antonio, San Antonio, TX 78249-0669, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science and Engineering, Harbin Institute of Technology, Harbin 150001, 2Soybean Research Institute (Key Laboratory of Soybean Biology of Chinese Education Ministry), Northeast Agricultural University, Harbin 150030, P.R. China and 3Department of Electrical and Computer Engineering, University of Texas at San Antonio, San Antonio, TX 78249-0669, USA","institution_ids":["https://openalex.org/I204983213","https://openalex.org/I169572211"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5068887242","https://openalex.org/A5072282199","https://openalex.org/A5079800756"],"corresponding_institution_ids":["https://openalex.org/I169572211","https://openalex.org/I204983213"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":2.3185,"has_fulltext":true,"cited_by_count":76,"citation_normalized_percentile":{"value":0.88442166,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"27","issue":"10","first_page":"1368","last_page":"1376"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.8345000147819519,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.8345000147819519,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10184","display_name":"Plant Molecular Biology Research","score":0.06319999694824219,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.012799999676644802,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6410515904426575},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6137078404426575},{"id":"https://openalex.org/keywords/medicago-truncatula","display_name":"Medicago truncatula","score":0.6064786314964294},{"id":"https://openalex.org/keywords/microrna","display_name":"microRNA","score":0.48796266317367554},{"id":"https://openalex.org/keywords/support-vector-machine","display_name":"Support vector machine","score":0.48707345128059387},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.30186307430267334},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.29873326420783997},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.27997151017189026},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.21173197031021118}],"concepts":[{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6410515904426575},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6137078404426575},{"id":"https://openalex.org/C2778339097","wikidata":"https://www.wikidata.org/wiki/Q136894","display_name":"Medicago truncatula","level":4,"score":0.6064786314964294},{"id":"https://openalex.org/C145059251","wikidata":"https://www.wikidata.org/wiki/Q310899","display_name":"microRNA","level":3,"score":0.48796266317367554},{"id":"https://openalex.org/C12267149","wikidata":"https://www.wikidata.org/wiki/Q282453","display_name":"Support vector machine","level":2,"score":0.48707345128059387},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.30186307430267334},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.29873326420783997},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.27997151017189026},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.21173197031021118},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.0},{"id":"https://openalex.org/C43144210","wikidata":"https://www.wikidata.org/wiki/Q121610","display_name":"Symbiosis","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010944","descriptor_name":"Plants","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D018749","descriptor_name":"RNA, Plant","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D018749","descriptor_name":"RNA, Plant","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D018749","descriptor_name":"RNA, Plant","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D018749","descriptor_name":"RNA, Plant","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D018749","descriptor_name":"RNA, Plant","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D018749","descriptor_name":"RNA, Plant","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D018749","descriptor_name":"RNA, Plant","qualifier_ui":"Q000302","qualifier_name":"isolation & purification","is_major_topic":false},{"descriptor_ui":"D018749","descriptor_name":"RNA, Plant","qualifier_ui":"Q000302","qualifier_name":"isolation & purification","is_major_topic":false},{"descriptor_ui":"D018749","descriptor_name":"RNA, Plant","qualifier_ui":"Q000302","qualifier_name":"isolation & purification","is_major_topic":false},{"descriptor_ui":"D018749","descriptor_name":"RNA, Plant","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D018749","descriptor_name":"RNA, Plant","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D018749","descriptor_name":"RNA, Plant","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000302","qualifier_name":"isolation & purification","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000302","qualifier_name":"isolation & purification","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000302","qualifier_name":"isolation & purification","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D055029","descriptor_name":"Inverted Repeat Sequences","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055029","descriptor_name":"Inverted Repeat Sequences","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055029","descriptor_name":"Inverted Repeat Sequences","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btr153","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr153","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/10/1368/48861514/bioinformatics_27_10_1368.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:21441575","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21441575","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:open-archive.highwire.org:bioinfo:27/10/1368","is_oa":false,"landing_page_url":"http://bioinformatics.oxfordjournals.org/cgi/content/short/27/10/1368","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btr153","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr153","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/10/1368/48861514/bioinformatics_27_10_1368.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.550000011920929,"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land"}],"awards":[{"id":"https://openalex.org/G2095018273","display_name":"\u5927\u8c46RNA\u7ed3\u6784\u4e0e\u8fdb\u5316\u5206\u6790\u7684\u4fe1\u606f\u5904\u7406\u65b9\u6cd5\u7814\u7a76","funder_award_id":"60932008","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320325186","display_name":"Northeast Agricultural University","ror":"https://ror.org/0515nd386"},{"id":"https://openalex.org/F4320335787","display_name":"Fundamental Research Funds for the Central Universities","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2154513100.pdf","grobid_xml":"https://content.openalex.org/works/W2154513100.grobid-xml"},"referenced_works_count":36,"referenced_works":["https://openalex.org/W144423133","https://openalex.org/W1494075612","https://openalex.org/W1504694836","https://openalex.org/W1543796220","https://openalex.org/W1845151788","https://openalex.org/W1902809146","https://openalex.org/W1920564293","https://openalex.org/W1965895350","https://openalex.org/W1976021976","https://openalex.org/W1987248329","https://openalex.org/W1996423252","https://openalex.org/W2012986985","https://openalex.org/W2041540441","https://openalex.org/W2051728363","https://openalex.org/W2054493965","https://openalex.org/W2056678178","https://openalex.org/W2061011128","https://openalex.org/W2079165446","https://openalex.org/W2081747395","https://openalex.org/W2093213907","https://openalex.org/W2098044747","https://openalex.org/W2103487585","https://openalex.org/W2114973325","https://openalex.org/W2121289117","https://openalex.org/W2123079914","https://openalex.org/W2125055259","https://openalex.org/W2129137649","https://openalex.org/W2129395023","https://openalex.org/W2129621498","https://openalex.org/W2131674459","https://openalex.org/W2140751493","https://openalex.org/W2156847802","https://openalex.org/W2157039533","https://openalex.org/W2161283857","https://openalex.org/W2163091657","https://openalex.org/W2166349011"],"related_works":["https://openalex.org/W2791495534","https://openalex.org/W4214697666","https://openalex.org/W2996106003","https://openalex.org/W2995904357","https://openalex.org/W2078779178","https://openalex.org/W3015781460","https://openalex.org/W2288222035","https://openalex.org/W2122406510","https://openalex.org/W2560679863","https://openalex.org/W4212812884"],"abstract_inverted_index":{"MOTIVATION:":[0],"MicroRNAs":[1],"(miRNAs)":[2],"are":[3,38,69,152,166,176],"a":[4,94,253],"set":[5,162],"of":[6,142,163,220,244],"short":[7],"(21-24":[8],"nt)":[9],"non-coding":[10],"RNAs":[11],"that":[12],"play":[13],"significant":[14],"roles":[15],"as":[16],"post-transcriptional":[17],"regulators":[18],"in":[19,154,182],"animals":[20,82],"and":[21,46,105,145,215,237,249],"plants.":[22,87],"While":[23],"some":[24],"existing":[25],"methods":[26,80],"use":[27],"comparative":[28],"genomic":[29],"approaches":[30],"to":[31,86,92,100,168,179,227,246],"identify":[32,55],"plant":[33,67,103,125,195,199,230,260],"precursor":[34],"miRNAs":[35,45,58],"(pre-miRNAs),":[36],"others":[37],"based":[39,96,114],"on":[40,97,115,193],"the":[41,56,60,66,73,77,133,138,158,170,183,194,221,228,233,238],"complementarity":[42],"characteristics":[43],"between":[44],"their":[47,180],"target":[48],"mRNAs":[49],"sequences.":[50],"However,":[51],"they":[52],"can":[53,224],"only":[54],"homologous":[57],"or":[59],"limited":[61],"complementary":[62],"miRNAs.":[63],"Furthermore,":[64],"since":[65],"pre-miRNAs":[68,104,151,251],"quite":[70],"different":[71],"from":[72,137,197],"animal":[74],"pre-miRNAs,":[75,232],"all":[76],"ab":[78],"initio":[79],"for":[81,123,157,256],"cannot":[83],"be":[84,225],"applied":[85],"Therefore,":[88],"it":[89],"is":[90,120],"essential":[91],"develop":[93],"method":[95,113,255],"machine":[98,118],"learning":[99],"classify":[101],"real":[102,248],"pseudo":[106,134,150,231,250],"genome":[107],"hairpins.":[108],"RESULTS:":[109],"A":[110,161],"novel":[111],"classification":[112,171],"support":[116],"vector":[117],"(SVM)":[119],"proposed":[121,222],"specifically":[122],"predicting":[124],"pre-miRNAs.":[126,261],"To":[127],"make":[128],"efficient":[129],"prediction,":[130],"we":[131],"extract":[132],"hairpin":[135],"sequences":[136,141],"protein":[139],"coding":[140],"Arabidopsis":[143],"thaliana":[144],"Glycine":[146],"max,":[147],"respectively.":[148],"These":[149],"extracted":[153,229],"this":[155],"study":[156],"first":[159],"time.":[160],"informative":[164],"features":[165],"selected":[167,177,234,240],"improve":[169],"accuracy.":[172],"The":[173,217,242],"training":[174,235],"samples":[175],"according":[178],"distributions":[181],"high-dimensional":[184],"sample":[185],"space.":[186],"Our":[187],"classifier":[188,223],"PlantMiRNAPred":[189,245],"achieves":[190],">90%":[191],"accuracy":[192],"datasets":[196],"eight":[198],"species,":[200],"including":[201],"A.thaliana,":[202],"Oryza":[203],"sativa,":[204],"Populus":[205],"trichocarpa,":[206],"Physcomitrella":[207],"patens,":[208],"Medicago":[209],"truncatula,":[210],"Sorghum":[211],"bicolor,":[212],"Zea":[213],"mays":[214],"G.max.":[216],"superior":[218],"performance":[219],"attributed":[226],"dataset":[236],"carefully":[239],"features.":[241],"ability":[243],"discern":[247],"provides":[252],"viable":[254],"discovering":[257],"new":[258],"non-homologous":[259]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":6},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":7},{"year":2016,"cited_by_count":9},{"year":2015,"cited_by_count":15},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":10},{"year":2012,"cited_by_count":6}],"updated_date":"2026-06-19T17:40:00.097472","created_date":"2016-06-24T00:00:00"}
