{"id":"https://openalex.org/W2118492350","doi":"https://doi.org/10.1093/bioinformatics/btr097","title":"AGRA: analysis of gene ranking algorithms","display_name":"AGRA: analysis of gene ranking algorithms","publication_year":2011,"publication_date":"2011-02-23","ids":{"openalex":"https://openalex.org/W2118492350","doi":"https://doi.org/10.1093/bioinformatics/btr097","mag":"2118492350","pmid":"https://pubmed.ncbi.nlm.nih.gov/21349873"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btr097","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr097","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/8/1185/616922/btr097.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/27/8/1185/616922/btr097.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5089727775","display_name":"Simon Kocbek","orcid":null},"institutions":[{"id":"https://openalex.org/I161296585","display_name":"Tokyo University of Science","ror":"https://ror.org/05sj3n476","country_code":"JP","type":"education","lineage":["https://openalex.org/I161296585"]},{"id":"https://openalex.org/I204778367","display_name":"Norwegian University of Science and Technology","ror":"https://ror.org/05xg72x27","country_code":"NO","type":"education","lineage":["https://openalex.org/I204778367"]},{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]},{"id":"https://openalex.org/I37696226","display_name":"University of Maribor","ror":"https://ror.org/01d5jce07","country_code":"SI","type":"education","lineage":["https://openalex.org/I37696226"]}],"countries":["GB","JP","NO","SI"],"is_corresponding":true,"raw_author_name":"Simon Kocbek","raw_affiliation_strings":["1 Faculty of Health Sciences, University of Maribor, Maribor, Slovenia, 2Department of Computer Science, University of Tokyo, Tokyo, Japan, 3School of Computer Science, University of Manchester, Manchester, UK, 4School of Information Science, JAIST, Nomi, Japan, 5National Centre for Text Mining (NaCTeM) and 6Department of Computer Science, Norwegian University of Science and Technology, Trondheim, Norway"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Faculty of Health Sciences, University of Maribor, Maribor, Slovenia, 2Department of Computer Science, University of Tokyo, Tokyo, Japan, 3School of Computer Science, University of Manchester, Manchester, UK, 4School of Information Science, JAIST, Nomi, Japan, 5National Centre for Text Mining (NaCTeM) and 6Department of Computer Science, Norwegian University of Science and Technology, Trondheim, Norway","institution_ids":["https://openalex.org/I161296585","https://openalex.org/I204778367","https://openalex.org/I28407311","https://openalex.org/I37696226"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044967495","display_name":"Rune S\u00e6tre","orcid":null},"institutions":[{"id":"https://openalex.org/I161296585","display_name":"Tokyo University of Science","ror":"https://ror.org/05sj3n476","country_code":"JP","type":"education","lineage":["https://openalex.org/I161296585"]},{"id":"https://openalex.org/I204778367","display_name":"Norwegian University of Science and Technology","ror":"https://ror.org/05xg72x27","country_code":"NO","type":"education","lineage":["https://openalex.org/I204778367"]},{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]},{"id":"https://openalex.org/I37696226","display_name":"University of Maribor","ror":"https://ror.org/01d5jce07","country_code":"SI","type":"education","lineage":["https://openalex.org/I37696226"]}],"countries":["GB","JP","NO","SI"],"is_corresponding":false,"raw_author_name":"Rune S\u00e6tre","raw_affiliation_strings":["1 Faculty of Health Sciences, University of Maribor, Maribor, Slovenia, 2Department of Computer Science, University of Tokyo, Tokyo, Japan, 3School of Computer Science, University of Manchester, Manchester, UK, 4School of Information Science, JAIST, Nomi, Japan, 5National Centre for Text Mining (NaCTeM) and 6Department of Computer Science, Norwegian University of Science and Technology, Trondheim, Norway"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Faculty of Health Sciences, University of Maribor, Maribor, Slovenia, 2Department of Computer Science, University of Tokyo, Tokyo, Japan, 3School of Computer Science, University of Manchester, Manchester, UK, 4School of Information Science, JAIST, Nomi, Japan, 5National Centre for Text Mining (NaCTeM) and 6Department of Computer Science, Norwegian University of Science and Technology, Trondheim, Norway","institution_ids":["https://openalex.org/I161296585","https://openalex.org/I204778367","https://openalex.org/I28407311","https://openalex.org/I37696226"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017783286","display_name":"Gregor \u0160tiglic","orcid":"https://orcid.org/0000-0002-0183-8679"},"institutions":[{"id":"https://openalex.org/I161296585","display_name":"Tokyo University of Science","ror":"https://ror.org/05sj3n476","country_code":"JP","type":"education","lineage":["https://openalex.org/I161296585"]},{"id":"https://openalex.org/I204778367","display_name":"Norwegian University of Science and Technology","ror":"https://ror.org/05xg72x27","country_code":"NO","type":"education","lineage":["https://openalex.org/I204778367"]},{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]},{"id":"https://openalex.org/I37696226","display_name":"University of Maribor","ror":"https://ror.org/01d5jce07","country_code":"SI","type":"education","lineage":["https://openalex.org/I37696226"]}],"countries":["GB","JP","NO","SI"],"is_corresponding":false,"raw_author_name":"Gregor Stiglic","raw_affiliation_strings":["1 Faculty of Health Sciences, University of Maribor, Maribor, Slovenia, 2Department of Computer Science, University of Tokyo, Tokyo, Japan, 3School of Computer Science, University of Manchester, Manchester, UK, 4School of Information Science, JAIST, Nomi, Japan, 5National Centre for Text Mining (NaCTeM) and 6Department of Computer Science, Norwegian University of Science and Technology, Trondheim, Norway"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Faculty of Health Sciences, University of Maribor, Maribor, Slovenia, 2Department of Computer Science, University of Tokyo, Tokyo, Japan, 3School of Computer Science, University of Manchester, Manchester, UK, 4School of Information Science, JAIST, Nomi, Japan, 5National Centre for Text Mining (NaCTeM) and 6Department of Computer Science, Norwegian University of Science and Technology, Trondheim, Norway","institution_ids":["https://openalex.org/I161296585","https://openalex.org/I204778367","https://openalex.org/I28407311","https://openalex.org/I37696226"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063923711","display_name":"Jin-Dong Kim","orcid":"https://orcid.org/0000-0001-9660-6303"},"institutions":[{"id":"https://openalex.org/I161296585","display_name":"Tokyo University of Science","ror":"https://ror.org/05sj3n476","country_code":"JP","type":"education","lineage":["https://openalex.org/I161296585"]},{"id":"https://openalex.org/I204778367","display_name":"Norwegian University of Science and Technology","ror":"https://ror.org/05xg72x27","country_code":"NO","type":"education","lineage":["https://openalex.org/I204778367"]},{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]},{"id":"https://openalex.org/I37696226","display_name":"University of Maribor","ror":"https://ror.org/01d5jce07","country_code":"SI","type":"education","lineage":["https://openalex.org/I37696226"]}],"countries":["GB","JP","NO","SI"],"is_corresponding":false,"raw_author_name":"Jin-Dong Kim","raw_affiliation_strings":["1 Faculty of Health Sciences, University of Maribor, Maribor, Slovenia, 2Department of Computer Science, University of Tokyo, Tokyo, Japan, 3School of Computer Science, University of Manchester, Manchester, UK, 4School of Information Science, JAIST, Nomi, Japan, 5National Centre for Text Mining (NaCTeM) and 6Department of Computer Science, Norwegian University of Science and Technology, Trondheim, Norway"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Faculty of Health Sciences, University of Maribor, Maribor, Slovenia, 2Department of Computer Science, University of Tokyo, Tokyo, Japan, 3School of Computer Science, University of Manchester, Manchester, UK, 4School of Information Science, JAIST, Nomi, Japan, 5National Centre for Text Mining (NaCTeM) and 6Department of Computer Science, Norwegian University of Science and Technology, Trondheim, Norway","institution_ids":["https://openalex.org/I161296585","https://openalex.org/I204778367","https://openalex.org/I28407311","https://openalex.org/I37696226"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078285925","display_name":"Igor Pernek","orcid":"https://orcid.org/0000-0003-4637-2814"},"institutions":[{"id":"https://openalex.org/I161296585","display_name":"Tokyo University of Science","ror":"https://ror.org/05sj3n476","country_code":"JP","type":"education","lineage":["https://openalex.org/I161296585"]},{"id":"https://openalex.org/I204778367","display_name":"Norwegian University of Science and Technology","ror":"https://ror.org/05xg72x27","country_code":"NO","type":"education","lineage":["https://openalex.org/I204778367"]},{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]},{"id":"https://openalex.org/I37696226","display_name":"University of Maribor","ror":"https://ror.org/01d5jce07","country_code":"SI","type":"education","lineage":["https://openalex.org/I37696226"]}],"countries":["GB","JP","NO","SI"],"is_corresponding":false,"raw_author_name":"Igor Pernek","raw_affiliation_strings":["1 Faculty of Health Sciences, University of Maribor, Maribor, Slovenia, 2Department of Computer Science, University of Tokyo, Tokyo, Japan, 3School of Computer Science, University of Manchester, Manchester, UK, 4School of Information Science, JAIST, Nomi, Japan, 5National Centre for Text Mining (NaCTeM) and 6Department of Computer Science, Norwegian University of Science and Technology, Trondheim, Norway"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Faculty of Health Sciences, University of Maribor, Maribor, Slovenia, 2Department of Computer Science, University of Tokyo, Tokyo, Japan, 3School of Computer Science, University of Manchester, Manchester, UK, 4School of Information Science, JAIST, Nomi, Japan, 5National Centre for Text Mining (NaCTeM) and 6Department of Computer Science, Norwegian University of Science and Technology, Trondheim, Norway","institution_ids":["https://openalex.org/I161296585","https://openalex.org/I204778367","https://openalex.org/I28407311","https://openalex.org/I37696226"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064113904","display_name":"Yoshimasa Tsuruoka","orcid":"https://orcid.org/0000-0002-0707-1077"},"institutions":[{"id":"https://openalex.org/I161296585","display_name":"Tokyo University of Science","ror":"https://ror.org/05sj3n476","country_code":"JP","type":"education","lineage":["https://openalex.org/I161296585"]},{"id":"https://openalex.org/I204778367","display_name":"Norwegian University of Science and Technology","ror":"https://ror.org/05xg72x27","country_code":"NO","type":"education","lineage":["https://openalex.org/I204778367"]},{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]},{"id":"https://openalex.org/I37696226","display_name":"University of Maribor","ror":"https://ror.org/01d5jce07","country_code":"SI","type":"education","lineage":["https://openalex.org/I37696226"]}],"countries":["GB","JP","NO","SI"],"is_corresponding":false,"raw_author_name":"Yoshimasa Tsuruoka","raw_affiliation_strings":["1 Faculty of Health Sciences, University of Maribor, Maribor, Slovenia, 2Department of Computer Science, University of Tokyo, Tokyo, Japan, 3School of Computer Science, University of Manchester, Manchester, UK, 4School of Information Science, JAIST, Nomi, Japan, 5National Centre for Text Mining (NaCTeM) and 6Department of Computer Science, Norwegian University of Science and Technology, Trondheim, Norway"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Faculty of Health Sciences, University of Maribor, Maribor, Slovenia, 2Department of Computer Science, University of Tokyo, Tokyo, Japan, 3School of Computer Science, University of Manchester, Manchester, UK, 4School of Information Science, JAIST, Nomi, Japan, 5National Centre for Text Mining (NaCTeM) and 6Department of Computer Science, Norwegian University of Science and Technology, Trondheim, Norway","institution_ids":["https://openalex.org/I161296585","https://openalex.org/I204778367","https://openalex.org/I28407311","https://openalex.org/I37696226"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021268380","display_name":"Peter Kokol","orcid":"https://orcid.org/0000-0001-9102-9359"},"institutions":[{"id":"https://openalex.org/I161296585","display_name":"Tokyo University of Science","ror":"https://ror.org/05sj3n476","country_code":"JP","type":"education","lineage":["https://openalex.org/I161296585"]},{"id":"https://openalex.org/I204778367","display_name":"Norwegian University of Science and Technology","ror":"https://ror.org/05xg72x27","country_code":"NO","type":"education","lineage":["https://openalex.org/I204778367"]},{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]},{"id":"https://openalex.org/I37696226","display_name":"University of Maribor","ror":"https://ror.org/01d5jce07","country_code":"SI","type":"education","lineage":["https://openalex.org/I37696226"]}],"countries":["GB","JP","NO","SI"],"is_corresponding":false,"raw_author_name":"Peter Kokol","raw_affiliation_strings":["1 Faculty of Health Sciences, University of Maribor, Maribor, Slovenia, 2Department of Computer Science, University of Tokyo, Tokyo, Japan, 3School of Computer Science, University of Manchester, Manchester, UK, 4School of Information Science, JAIST, Nomi, Japan, 5National Centre for Text Mining (NaCTeM) and 6Department of Computer Science, Norwegian University of Science and Technology, Trondheim, Norway"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Faculty of Health Sciences, University of Maribor, Maribor, Slovenia, 2Department of Computer Science, University of Tokyo, Tokyo, Japan, 3School of Computer Science, University of Manchester, Manchester, UK, 4School of Information Science, JAIST, Nomi, Japan, 5National Centre for Text Mining (NaCTeM) and 6Department of Computer Science, Norwegian University of Science and Technology, Trondheim, Norway","institution_ids":["https://openalex.org/I161296585","https://openalex.org/I204778367","https://openalex.org/I28407311","https://openalex.org/I37696226"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077976343","display_name":"Sophia Ananiadou","orcid":"https://orcid.org/0000-0002-4097-9191"},"institutions":[{"id":"https://openalex.org/I161296585","display_name":"Tokyo University of Science","ror":"https://ror.org/05sj3n476","country_code":"JP","type":"education","lineage":["https://openalex.org/I161296585"]},{"id":"https://openalex.org/I204778367","display_name":"Norwegian University of Science and Technology","ror":"https://ror.org/05xg72x27","country_code":"NO","type":"education","lineage":["https://openalex.org/I204778367"]},{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]},{"id":"https://openalex.org/I37696226","display_name":"University of Maribor","ror":"https://ror.org/01d5jce07","country_code":"SI","type":"education","lineage":["https://openalex.org/I37696226"]}],"countries":["GB","JP","NO","SI"],"is_corresponding":false,"raw_author_name":"Sophia Ananiadou","raw_affiliation_strings":["1 Faculty of Health Sciences, University of Maribor, Maribor, Slovenia, 2Department of Computer Science, University of Tokyo, Tokyo, Japan, 3School of Computer Science, University of Manchester, Manchester, UK, 4School of Information Science, JAIST, Nomi, Japan, 5National Centre for Text Mining (NaCTeM) and 6Department of Computer Science, Norwegian University of Science and Technology, Trondheim, Norway"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Faculty of Health Sciences, University of Maribor, Maribor, Slovenia, 2Department of Computer Science, University of Tokyo, Tokyo, Japan, 3School of Computer Science, University of Manchester, Manchester, UK, 4School of Information Science, JAIST, Nomi, Japan, 5National Centre for Text Mining (NaCTeM) and 6Department of Computer Science, Norwegian University of Science and Technology, Trondheim, Norway","institution_ids":["https://openalex.org/I161296585","https://openalex.org/I204778367","https://openalex.org/I28407311","https://openalex.org/I37696226"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5112241147","display_name":"Jun\u2019ichi Tsujii","orcid":null},"institutions":[{"id":"https://openalex.org/I161296585","display_name":"Tokyo University of Science","ror":"https://ror.org/05sj3n476","country_code":"JP","type":"education","lineage":["https://openalex.org/I161296585"]},{"id":"https://openalex.org/I204778367","display_name":"Norwegian University of Science and Technology","ror":"https://ror.org/05xg72x27","country_code":"NO","type":"education","lineage":["https://openalex.org/I204778367"]},{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]},{"id":"https://openalex.org/I37696226","display_name":"University of Maribor","ror":"https://ror.org/01d5jce07","country_code":"SI","type":"education","lineage":["https://openalex.org/I37696226"]}],"countries":["GB","JP","NO","SI"],"is_corresponding":true,"raw_author_name":"Jun'ichi Tsujii","raw_affiliation_strings":["1 Faculty of Health Sciences, University of Maribor, Maribor, Slovenia, 2Department of Computer Science, University of Tokyo, Tokyo, Japan, 3School of Computer Science, University of Manchester, Manchester, UK, 4School of Information Science, JAIST, Nomi, Japan, 5National Centre for Text Mining (NaCTeM) and 6Department of Computer Science, Norwegian University of Science and Technology, Trondheim, Norway"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Faculty of Health Sciences, University of Maribor, Maribor, Slovenia, 2Department of Computer Science, University of Tokyo, Tokyo, Japan, 3School of Computer Science, University of Manchester, Manchester, UK, 4School of Information Science, JAIST, Nomi, Japan, 5National Centre for Text Mining (NaCTeM) and 6Department of Computer Science, Norwegian University of Science and Technology, Trondheim, Norway","institution_ids":["https://openalex.org/I161296585","https://openalex.org/I204778367","https://openalex.org/I28407311","https://openalex.org/I37696226"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5089727775","https://openalex.org/A5112241147"],"corresponding_institution_ids":["https://openalex.org/I161296585","https://openalex.org/I204778367","https://openalex.org/I28407311","https://openalex.org/I37696226"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.0,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.11195489,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"27","issue":"8","first_page":"1185","last_page":"1186"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.8773000240325928,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.8773000240325928,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.07569999992847443,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.019600000232458115,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/agra","display_name":"Agra","score":0.9400621652603149},{"id":"https://openalex.org/keywords/ranking","display_name":"Ranking (information retrieval)","score":0.7715504765510559},{"id":"https://openalex.org/keywords/rank","display_name":"Rank (graph theory)","score":0.644219160079956},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.601252019405365},{"id":"https://openalex.org/keywords/upload","display_name":"Upload","score":0.5049012303352356},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.48037442564964294},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.46960386633872986},{"id":"https://openalex.org/keywords/learning-to-rank","display_name":"Learning to rank","score":0.45771968364715576},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.44796022772789},{"id":"https://openalex.org/keywords/gene-prediction","display_name":"Gene prediction","score":0.4299318492412567},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.4296724200248718},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.256261944770813},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.2556629776954651},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.18968123197555542},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.14357024431228638},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.08141037821769714}],"concepts":[{"id":"https://openalex.org/C2778779881","wikidata":"https://www.wikidata.org/wiki/Q4033577","display_name":"Agra","level":2,"score":0.9400621652603149},{"id":"https://openalex.org/C189430467","wikidata":"https://www.wikidata.org/wiki/Q7293293","display_name":"Ranking (information retrieval)","level":2,"score":0.7715504765510559},{"id":"https://openalex.org/C164226766","wikidata":"https://www.wikidata.org/wiki/Q7293202","display_name":"Rank (graph theory)","level":2,"score":0.644219160079956},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.601252019405365},{"id":"https://openalex.org/C71901391","wikidata":"https://www.wikidata.org/wiki/Q7126699","display_name":"Upload","level":2,"score":0.5049012303352356},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.48037442564964294},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.46960386633872986},{"id":"https://openalex.org/C86037889","wikidata":"https://www.wikidata.org/wiki/Q4330127","display_name":"Learning to rank","level":3,"score":0.45771968364715576},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.44796022772789},{"id":"https://openalex.org/C105565629","wikidata":"https://www.wikidata.org/wiki/Q1248292","display_name":"Gene prediction","level":4,"score":0.4299318492412567},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.4296724200248718},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.256261944770813},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.2556629776954651},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.18968123197555542},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.14357024431228638},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.08141037821769714},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":8,"locations":[{"id":"doi:10.1093/bioinformatics/btr097","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr097","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/8/1185/616922/btr097.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:21349873","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21349873","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:dk.um.si:IzpisGradiva.php?id=30850","is_oa":true,"landing_page_url":"https://dk.um.si/IzpisGradiva.php?id=30850","pdf_url":null,"source":{"id":"https://openalex.org/S4377196302","display_name":"University of Maribor digital library (University of Maribor)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I37696226","host_organization_name":"University of Maribor","host_organization_lineage":["https://openalex.org/I37696226"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computer applications in the biosciences, 2011.","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:pure.atira.dk:openaire_cris_publications/76202ab2-c254-4c8a-a10f-fe48c65b1741","is_oa":false,"landing_page_url":"https://research.manchester.ac.uk/en/publications/76202ab2-c254-4c8a-a10f-fe48c65b1741","pdf_url":null,"source":{"id":"https://openalex.org/S4306400662","display_name":"Research Explorer (The University of Manchester)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I28407311","host_organization_name":"University of Manchester","host_organization_lineage":["https://openalex.org/I28407311"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Kocbek, S, S\u00e6tre, R, Stiglic, G, Kim, J D, Pernek, I, Tsuruoka, Y, Kokol, P, Ananiadou, S & Tsujii, J 2011, 'AGRA: Analysis of gene ranking algorithms', Bioinformatics, vol. 27, no. 8, btr097, pp. 1185-1186. https://doi.org/10.1093/bioinformatics/btr097","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.934.1023","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.934.1023","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://bioinformatics.oxfordjournals.org/content/early/2011/02/23/bioinformatics.btr097.full.pdf","raw_type":"text"},{"id":"pmh:oai:alma.61RMIT_INST:11246999240001341","is_oa":false,"landing_page_url":"http://doi.org/10.1093/bioinformatics/btr097","pdf_url":null,"source":{"id":"https://openalex.org/S4306402074","display_name":"RMIT Research Repository (RMIT University Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I82951845","host_organization_name":"RMIT University","host_organization_lineage":["https://openalex.org/I82951845"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"text"},{"id":"pmh:oai:europepmc.org:2084537","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3072556","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:figshare.com:article/27464613","is_oa":true,"landing_page_url":"https://figshare.com/articles/journal_contribution/AGRA_Analysis_of_gene_ranking_algorithms/27464613","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btr097","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr097","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/8/1185/616922/btr097.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education","score":0.4699999988079071}],"awards":[{"id":"https://openalex.org/G1686462611","display_name":"Automated Biological Event Extraction from the Literature for Drug Discovery","funder_award_id":"BB/G013160/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G2478298654","display_name":"Tools for the text mining-based visualisation of the provenance of biochemical networks","funder_award_id":"BB/E004431/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G4655000275","display_name":null,"funder_award_id":"BB/E004431/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G5246379475","display_name":null,"funder_award_id":"BB/G013160/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"},{"id":"https://openalex.org/F4320334764","display_name":"Japan Society for the Promotion of Science","ror":"https://ror.org/00hhkn466"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":8,"referenced_works":["https://openalex.org/W2016398181","https://openalex.org/W2091473053","https://openalex.org/W2111602564","https://openalex.org/W2112134481","https://openalex.org/W2112723752","https://openalex.org/W2118190787","https://openalex.org/W2131619859","https://openalex.org/W2147558260"],"related_works":["https://openalex.org/W104148947","https://openalex.org/W4211079572","https://openalex.org/W2572315477","https://openalex.org/W3199233695","https://openalex.org/W4283836875","https://openalex.org/W3172141810","https://openalex.org/W2041335144","https://openalex.org/W159425995","https://openalex.org/W2470818894","https://openalex.org/W2483845706"],"abstract_inverted_index":{"UNLABELLED:":[0],"Often,":[1],"the":[2,26,38,78,105,125,128,167,170,196],"most":[3,58],"informative":[4],"genes":[5],"have":[6,20],"to":[7,23,34],"be":[8,118,154],"selected":[9],"from":[10],"different":[11,110,122],"gene":[12,17,41,69,98,106,115,135,163],"sets":[13],"and":[14,100,172,181,193],"several":[15],"computer":[16],"ranking":[18,42,70],"algorithms":[19,43,71],"been":[21],"developed":[22,37],"cope":[24],"with":[25,84],"problem.":[27],"To":[28],"help":[29],"researchers":[30],"decide":[31],"which":[32],"algorithm":[33],"use,":[35],"we":[36,90],"analysis":[39],"of":[40,55,61,68,104,133,137,169,177],"(AGRA)":[44],"system":[45,81],"that":[46,64],"offers":[47,101,144,173],"a":[48,102,145,149,174],"novel":[49],"technique":[50],"for":[51,74,96,158],"comparing":[52],"ranked":[53,179],"lists":[54,107,116,136],"genes.":[56],"The":[57,113,141],"important":[59],"feature":[60],"AGRA":[62,87,156],"is":[63,72,139],"no":[65],"previous":[66],"knowledge":[67],"needed":[73],"their":[75],"comparison.":[76],"Using":[77],"text":[79,85,146],"mining":[80],"finding-associated":[82],"concepts":[83,178],"analysis.":[86],"defines":[88],"what":[89],"call":[91],"biomedical":[92,151],"concept":[93,152,160,171],"space":[94],"(BCS)":[95],"each":[97,131,162],"list":[99],"comparison":[103],"in":[108,161,191],"six":[109],"BCS":[111],"categories.":[112],"uploaded":[114],"can":[117,153],"compared":[119],"using":[120],"two":[121,134],"methods.":[123],"In":[124],"first":[126],"method,":[127],"overlap":[129],"between":[130],"pair":[132],"BCSs":[138],"calculated.":[140],"second":[142],"method":[143],"field":[147],"where":[148],"specific":[150],"entered.":[155],"searches":[157],"this":[159],"lists'":[164],"BCS,":[165],"highlights":[166],"rank":[168],"visual":[175],"representation":[176],"above":[180],"below":[182],"it.":[183],"AVAILABILITY":[184],"AND":[185],"IMPLEMENTATION:":[186],"Available":[187],"at":[188],"http://agra.fzv.uni-mb.si/,":[189],"implemented":[190],"Java":[192],"running":[194],"on":[195],"Glassfish":[197],"server.":[198],"CONTACT:":[199],"simon.kocbek@uni-mb.si.":[200]},"counts_by_year":[{"year":2024,"cited_by_count":1}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}
