{"id":"https://openalex.org/W2095885321","doi":"https://doi.org/10.1093/bioinformatics/btr087","title":"PrimerProspector: <i>de novo</i> design and taxonomic analysis of barcoded polymerase chain reaction primers","display_name":"PrimerProspector: <i>de novo</i> design and taxonomic analysis of barcoded polymerase chain reaction primers","publication_year":2011,"publication_date":"2011-02-23","ids":{"openalex":"https://openalex.org/W2095885321","doi":"https://doi.org/10.1093/bioinformatics/btr087","mag":"2095885321","pmid":"https://pubmed.ncbi.nlm.nih.gov/21349862"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btr087","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr087","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/8/1159/17102308/btr087.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/27/8/1159/17102308/btr087.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5025148058","display_name":"William A. Walters","orcid":null},"institutions":[{"id":"https://openalex.org/I1344073410","display_name":"Howard Hughes Medical Institute","ror":"https://ror.org/006w34k90","country_code":"US","type":"facility","lineage":["https://openalex.org/I1344073410"]},{"id":"https://openalex.org/I161675122","display_name":"Cooperative Institute for Research in Environmental Sciences","ror":"https://ror.org/00bdqav06","country_code":"US","type":"facility","lineage":["https://openalex.org/I1308126019","https://openalex.org/I1343035065","https://openalex.org/I161675122","https://openalex.org/I188538660","https://openalex.org/I2802992173"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"William A. Walters","raw_affiliation_strings":["1 Department of Molecular, Cellular, and Developmental Biology, 2Department of Chemistry and Biochemistry, 3Cooperative Institute for Research in Environmental Sciences, 4Department of Ecology and Evolutionary Biology, University of Colorado at Boulder, Boulder, CO 80309, USA and 5Howard Hughes Medical Institute, Boulder, CO, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Molecular, Cellular, and Developmental Biology, 2Department of Chemistry and Biochemistry, 3Cooperative Institute for Research in Environmental Sciences, 4Department of Ecology and Evolutionary Biology, University of Colorado at Boulder, Boulder, CO 80309, USA and 5Howard Hughes Medical Institute, Boulder, CO, USA","institution_ids":["https://openalex.org/I161675122","https://openalex.org/I1344073410"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038626201","display_name":"J. Gregory Caporaso","orcid":"https://orcid.org/0000-0002-8865-1670"},"institutions":[{"id":"https://openalex.org/I1344073410","display_name":"Howard Hughes Medical Institute","ror":"https://ror.org/006w34k90","country_code":"US","type":"facility","lineage":["https://openalex.org/I1344073410"]},{"id":"https://openalex.org/I161675122","display_name":"Cooperative Institute for Research in Environmental Sciences","ror":"https://ror.org/00bdqav06","country_code":"US","type":"facility","lineage":["https://openalex.org/I1308126019","https://openalex.org/I1343035065","https://openalex.org/I161675122","https://openalex.org/I188538660","https://openalex.org/I2802992173"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"J. Gregory Caporaso","raw_affiliation_strings":["1 Department of Molecular, Cellular, and Developmental Biology, 2Department of Chemistry and Biochemistry, 3Cooperative Institute for Research in Environmental Sciences, 4Department of Ecology and Evolutionary Biology, University of Colorado at Boulder, Boulder, CO 80309, USA and 5Howard Hughes Medical Institute, Boulder, CO, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Molecular, Cellular, and Developmental Biology, 2Department of Chemistry and Biochemistry, 3Cooperative Institute for Research in Environmental Sciences, 4Department of Ecology and Evolutionary Biology, University of Colorado at Boulder, Boulder, CO 80309, USA and 5Howard Hughes Medical Institute, Boulder, CO, USA","institution_ids":["https://openalex.org/I161675122","https://openalex.org/I1344073410"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5105687920","display_name":"Christian L. Lauber","orcid":null},"institutions":[{"id":"https://openalex.org/I1344073410","display_name":"Howard Hughes Medical Institute","ror":"https://ror.org/006w34k90","country_code":"US","type":"facility","lineage":["https://openalex.org/I1344073410"]},{"id":"https://openalex.org/I161675122","display_name":"Cooperative Institute for Research in Environmental Sciences","ror":"https://ror.org/00bdqav06","country_code":"US","type":"facility","lineage":["https://openalex.org/I1308126019","https://openalex.org/I1343035065","https://openalex.org/I161675122","https://openalex.org/I188538660","https://openalex.org/I2802992173"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Christian L. Lauber","raw_affiliation_strings":["1 Department of Molecular, Cellular, and Developmental Biology, 2Department of Chemistry and Biochemistry, 3Cooperative Institute for Research in Environmental Sciences, 4Department of Ecology and Evolutionary Biology, University of Colorado at Boulder, Boulder, CO 80309, USA and 5Howard Hughes Medical Institute, Boulder, CO, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Molecular, Cellular, and Developmental Biology, 2Department of Chemistry and Biochemistry, 3Cooperative Institute for Research in Environmental Sciences, 4Department of Ecology and Evolutionary Biology, University of Colorado at Boulder, Boulder, CO 80309, USA and 5Howard Hughes Medical Institute, Boulder, CO, USA","institution_ids":["https://openalex.org/I161675122","https://openalex.org/I1344073410"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052327929","display_name":"Donna Berg-Lyons","orcid":null},"institutions":[{"id":"https://openalex.org/I1344073410","display_name":"Howard Hughes Medical Institute","ror":"https://ror.org/006w34k90","country_code":"US","type":"facility","lineage":["https://openalex.org/I1344073410"]},{"id":"https://openalex.org/I161675122","display_name":"Cooperative Institute for Research in Environmental Sciences","ror":"https://ror.org/00bdqav06","country_code":"US","type":"facility","lineage":["https://openalex.org/I1308126019","https://openalex.org/I1343035065","https://openalex.org/I161675122","https://openalex.org/I188538660","https://openalex.org/I2802992173"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Donna Berg-Lyons","raw_affiliation_strings":["1 Department of Molecular, Cellular, and Developmental Biology, 2Department of Chemistry and Biochemistry, 3Cooperative Institute for Research in Environmental Sciences, 4Department of Ecology and Evolutionary Biology, University of Colorado at Boulder, Boulder, CO 80309, USA and 5Howard Hughes Medical Institute, Boulder, CO, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Molecular, Cellular, and Developmental Biology, 2Department of Chemistry and Biochemistry, 3Cooperative Institute for Research in Environmental Sciences, 4Department of Ecology and Evolutionary Biology, University of Colorado at Boulder, Boulder, CO 80309, USA and 5Howard Hughes Medical Institute, Boulder, CO, USA","institution_ids":["https://openalex.org/I161675122","https://openalex.org/I1344073410"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090803123","display_name":"Noah Fierer","orcid":"https://orcid.org/0000-0002-6432-4261"},"institutions":[{"id":"https://openalex.org/I1344073410","display_name":"Howard Hughes Medical Institute","ror":"https://ror.org/006w34k90","country_code":"US","type":"facility","lineage":["https://openalex.org/I1344073410"]},{"id":"https://openalex.org/I161675122","display_name":"Cooperative Institute for Research in Environmental Sciences","ror":"https://ror.org/00bdqav06","country_code":"US","type":"facility","lineage":["https://openalex.org/I1308126019","https://openalex.org/I1343035065","https://openalex.org/I161675122","https://openalex.org/I188538660","https://openalex.org/I2802992173"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Noah Fierer","raw_affiliation_strings":["1 Department of Molecular, Cellular, and Developmental Biology, 2Department of Chemistry and Biochemistry, 3Cooperative Institute for Research in Environmental Sciences, 4Department of Ecology and Evolutionary Biology, University of Colorado at Boulder, Boulder, CO 80309, USA and 5Howard Hughes Medical Institute, Boulder, CO, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Molecular, Cellular, and Developmental Biology, 2Department of Chemistry and Biochemistry, 3Cooperative Institute for Research in Environmental Sciences, 4Department of Ecology and Evolutionary Biology, University of Colorado at Boulder, Boulder, CO 80309, USA and 5Howard Hughes Medical Institute, Boulder, CO, USA","institution_ids":["https://openalex.org/I161675122","https://openalex.org/I1344073410"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5033881627","display_name":"Rob Knight","orcid":"https://orcid.org/0000-0002-0975-9019"},"institutions":[{"id":"https://openalex.org/I1344073410","display_name":"Howard Hughes Medical Institute","ror":"https://ror.org/006w34k90","country_code":"US","type":"facility","lineage":["https://openalex.org/I1344073410"]},{"id":"https://openalex.org/I161675122","display_name":"Cooperative Institute for Research in Environmental Sciences","ror":"https://ror.org/00bdqav06","country_code":"US","type":"facility","lineage":["https://openalex.org/I1308126019","https://openalex.org/I1343035065","https://openalex.org/I161675122","https://openalex.org/I188538660","https://openalex.org/I2802992173"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Rob Knight","raw_affiliation_strings":["1 Department of Molecular, Cellular, and Developmental Biology, 2Department of Chemistry and Biochemistry, 3Cooperative Institute for Research in Environmental Sciences, 4Department of Ecology and Evolutionary Biology, University of Colorado at Boulder, Boulder, CO 80309, USA and 5Howard Hughes Medical Institute, Boulder, CO, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Molecular, Cellular, and Developmental Biology, 2Department of Chemistry and Biochemistry, 3Cooperative Institute for Research in Environmental Sciences, 4Department of Ecology and Evolutionary Biology, University of Colorado at Boulder, Boulder, CO 80309, USA and 5Howard Hughes Medical Institute, Boulder, CO, USA","institution_ids":["https://openalex.org/I161675122","https://openalex.org/I1344073410"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5033881627"],"corresponding_institution_ids":["https://openalex.org/I1344073410","https://openalex.org/I161675122"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":7.9999,"has_fulltext":true,"cited_by_count":404,"citation_normalized_percentile":{"value":0.9834856,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"27","issue":"8","first_page":"1159","last_page":"1161"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.6367999911308289,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.6367999911308289,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.14110000431537628,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12640","display_name":"Environmental DNA in Biodiversity Studies","score":0.047600001096725464,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.597384512424469},{"id":"https://openalex.org/keywords/polymerase-chain-reaction","display_name":"Polymerase chain reaction","score":0.534666121006012},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5244251489639282},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5009770393371582},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4943122863769531},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.49342647194862366},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.435721218585968},{"id":"https://openalex.org/keywords/open-source","display_name":"Open source","score":0.43344205617904663},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.32778409123420715},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2431519329547882},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.2296300232410431},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.13719752430915833},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.08747008442878723}],"concepts":[{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.597384512424469},{"id":"https://openalex.org/C49105822","wikidata":"https://www.wikidata.org/wiki/Q176996","display_name":"Polymerase chain reaction","level":3,"score":0.534666121006012},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5244251489639282},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5009770393371582},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4943122863769531},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.49342647194862366},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.435721218585968},{"id":"https://openalex.org/C3018397939","wikidata":"https://www.wikidata.org/wiki/Q3644502","display_name":"Open source","level":3,"score":0.43344205617904663},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.32778409123420715},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2431519329547882},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.2296300232410431},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.13719752430915833},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.08747008442878723},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016133","descriptor_name":"Polymerase Chain Reaction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016133","descriptor_name":"Polymerase Chain Reaction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016133","descriptor_name":"Polymerase Chain Reaction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017931","descriptor_name":"DNA Primers","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D017931","descriptor_name":"DNA Primers","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D017931","descriptor_name":"DNA Primers","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btr087","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr087","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/8/1159/17102308/btr087.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:21349862","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21349862","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:escholarship.org:ark:/13030/qt40d6b9gq","is_oa":true,"landing_page_url":"https://escholarship.org/uc/item/40d6b9gq","pdf_url":"https://escholarship.org/uc/item/40d6b9gq","source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, vol 27, iss 8","raw_type":"article"},{"id":"pmh:oai:europepmc.org:2084535","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3072552","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btr087","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr087","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/8/1159/17102308/btr087.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1258997256","display_name":null,"funder_award_id":"T32GM008759","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G3867295794","display_name":null,"funder_award_id":"T32GM008759","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4123801631","display_name":null,"funder_award_id":"T32 GM008759","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G7625165417","display_name":null,"funder_award_id":"T32 GM142607","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"}],"funders":[{"id":"https://openalex.org/F4320306082","display_name":"Howard Hughes Medical Institute","ror":"https://ror.org/006w34k90"},{"id":"https://openalex.org/F4320306137","display_name":"Bill and Melinda Gates Foundation","ror":"https://ror.org/0456r8d26"},{"id":"https://openalex.org/F4320306301","display_name":"Crohn's and Colitis Foundation of America","ror":"https://ror.org/05f2xbq60"},{"id":"https://openalex.org/F4320312926","display_name":"Crohn's and Colitis Foundation","ror":"https://ror.org/05f2xbq60"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2095885321.pdf","grobid_xml":"https://content.openalex.org/works/W2095885321.grobid-xml"},"referenced_works_count":15,"referenced_works":["https://openalex.org/W1969435169","https://openalex.org/W1983476363","https://openalex.org/W1988925586","https://openalex.org/W1999195817","https://openalex.org/W2043847867","https://openalex.org/W2064632793","https://openalex.org/W2080283023","https://openalex.org/W2107594154","https://openalex.org/W2124351063","https://openalex.org/W2143980572","https://openalex.org/W2147199223","https://openalex.org/W2152885278","https://openalex.org/W2158795865","https://openalex.org/W6670326305","https://openalex.org/W6681999144"],"related_works":["https://openalex.org/W2124842464","https://openalex.org/W2382657549","https://openalex.org/W4376877853","https://openalex.org/W75565505","https://openalex.org/W3200575725","https://openalex.org/W4242732953","https://openalex.org/W4214847518","https://openalex.org/W1535063848","https://openalex.org/W2186225517","https://openalex.org/W1153144596"],"abstract_inverted_index":{"MOTIVATION:":[0],"PCR":[1],"amplification":[2],"of":[3,13,19,26,51,61],"DNA":[4],"is":[5,37,66],"a":[6,32],"key":[7],"preliminary":[8],"step":[9],"in":[10,58],"many":[11],"applications":[12],"high-throughput":[14],"sequencing":[15],"technologies,":[16],"yet":[17],"design":[18],"novel":[20,27],"barcoded":[21],"primers":[22,30,48,57],"and":[23,53],"taxonomic":[24,62],"analysis":[25],"or":[28],"existing":[29,56],"remains":[31],"challenging":[33],"task.":[34],"RESULTS:":[35],"PrimerProspector":[36,65],"an":[38],"open-source":[39,67],"software":[40,68],"package":[41],"that":[42],"allows":[43],"researchers":[44],"to":[45,54],"develop":[46],"new":[47],"from":[49],"collections":[50],"sequences":[52],"evaluate":[55],"the":[59],"context":[60],"data.":[63],"AVAILABILITY:":[64],"available":[69,79],"at":[70,80],"http://pprospector.sourceforge.net":[71],"CONTACT:":[72],"rob.knight@colorado.edu":[73],"SUPPLEMENTARY":[74],"INFORMATION:":[75],"Supplementary":[76],"data":[77],"are":[78],"Bioinformatics":[81],"online.":[82]},"counts_by_year":[{"year":2026,"cited_by_count":10},{"year":2025,"cited_by_count":19},{"year":2024,"cited_by_count":32},{"year":2023,"cited_by_count":21},{"year":2022,"cited_by_count":24},{"year":2021,"cited_by_count":41},{"year":2020,"cited_by_count":26},{"year":2019,"cited_by_count":32},{"year":2018,"cited_by_count":37},{"year":2017,"cited_by_count":39},{"year":2016,"cited_by_count":30},{"year":2015,"cited_by_count":32},{"year":2014,"cited_by_count":30},{"year":2013,"cited_by_count":19},{"year":2012,"cited_by_count":10}],"updated_date":"2026-07-04T07:58:01.006859","created_date":"2016-06-24T00:00:00"}
