{"id":"https://openalex.org/W2139099478","doi":"https://doi.org/10.1093/bioinformatics/btr083","title":"Interactive, multiscale navigation of large and complicated biological networks","display_name":"Interactive, multiscale navigation of large and complicated biological networks","publication_year":2011,"publication_date":"2011-02-23","ids":{"openalex":"https://openalex.org/W2139099478","doi":"https://doi.org/10.1093/bioinformatics/btr083","mag":"2139099478","pmid":"https://pubmed.ncbi.nlm.nih.gov/21349867"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btr083","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr083","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/8/1121/17101990/btr083.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/27/8/1121/17101990/btr083.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5081958819","display_name":"Thanet Praneenararat","orcid":null},"institutions":[{"id":"https://openalex.org/I113198587","display_name":"National Institute of Genetics","ror":"https://ror.org/02xg1m795","country_code":"JP","type":"facility","lineage":["https://openalex.org/I113198587","https://openalex.org/I1319490839","https://openalex.org/I4210158934"]},{"id":"https://openalex.org/I4210086780","display_name":"Japan Science and Technology Agency","ror":"https://ror.org/00097mb19","country_code":"JP","type":"government","lineage":["https://openalex.org/I4210086780"]},{"id":"https://openalex.org/I74801974","display_name":"The University of Tokyo","ror":"https://ror.org/057zh3y96","country_code":"JP","type":"education","lineage":["https://openalex.org/I74801974"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Thanet Praneenararat","raw_affiliation_strings":["1 Department of Computational Biology, The University of Tokyo, Kashiwa, Chiba 277-8568, 2National Bioscience Database Center, Japan Science and Technology Agency, Chiyoda, Tokyo 102-0081 and 3Center for Information Biology, National Institute of Genetics, Mishima, Shizuoka 411-8540, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Computational Biology, The University of Tokyo, Kashiwa, Chiba 277-8568, 2National Bioscience Database Center, Japan Science and Technology Agency, Chiyoda, Tokyo 102-0081 and 3Center for Information Biology, National Institute of Genetics, Mishima, Shizuoka 411-8540, Japan","institution_ids":["https://openalex.org/I4210086780","https://openalex.org/I74801974","https://openalex.org/I113198587"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5104355283","display_name":"Toshihisa Takagi","orcid":null},"institutions":[{"id":"https://openalex.org/I113198587","display_name":"National Institute of Genetics","ror":"https://ror.org/02xg1m795","country_code":"JP","type":"facility","lineage":["https://openalex.org/I113198587","https://openalex.org/I1319490839","https://openalex.org/I4210158934"]},{"id":"https://openalex.org/I4210086780","display_name":"Japan Science and Technology Agency","ror":"https://ror.org/00097mb19","country_code":"JP","type":"government","lineage":["https://openalex.org/I4210086780"]},{"id":"https://openalex.org/I74801974","display_name":"The University of Tokyo","ror":"https://ror.org/057zh3y96","country_code":"JP","type":"education","lineage":["https://openalex.org/I74801974"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Toshihisa Takagi","raw_affiliation_strings":["1 Department of Computational Biology, The University of Tokyo, Kashiwa, Chiba 277-8568, 2National Bioscience Database Center, Japan Science and Technology Agency, Chiyoda, Tokyo 102-0081 and 3Center for Information Biology, National Institute of Genetics, Mishima, Shizuoka 411-8540, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Computational Biology, The University of Tokyo, Kashiwa, Chiba 277-8568, 2National Bioscience Database Center, Japan Science and Technology Agency, Chiyoda, Tokyo 102-0081 and 3Center for Information Biology, National Institute of Genetics, Mishima, Shizuoka 411-8540, Japan","institution_ids":["https://openalex.org/I4210086780","https://openalex.org/I74801974","https://openalex.org/I113198587"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5088277364","display_name":"Wataru Iwasaki","orcid":"https://orcid.org/0000-0002-9169-9245"},"institutions":[{"id":"https://openalex.org/I113198587","display_name":"National Institute of Genetics","ror":"https://ror.org/02xg1m795","country_code":"JP","type":"facility","lineage":["https://openalex.org/I113198587","https://openalex.org/I1319490839","https://openalex.org/I4210158934"]},{"id":"https://openalex.org/I4210086780","display_name":"Japan Science and Technology Agency","ror":"https://ror.org/00097mb19","country_code":"JP","type":"government","lineage":["https://openalex.org/I4210086780"]},{"id":"https://openalex.org/I74801974","display_name":"The University of Tokyo","ror":"https://ror.org/057zh3y96","country_code":"JP","type":"education","lineage":["https://openalex.org/I74801974"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Wataru Iwasaki","raw_affiliation_strings":["1 Department of Computational Biology, The University of Tokyo, Kashiwa, Chiba 277-8568, 2National Bioscience Database Center, Japan Science and Technology Agency, Chiyoda, Tokyo 102-0081 and 3Center for Information Biology, National Institute of Genetics, Mishima, Shizuoka 411-8540, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Computational Biology, The University of Tokyo, Kashiwa, Chiba 277-8568, 2National Bioscience Database Center, Japan Science and Technology Agency, Chiyoda, Tokyo 102-0081 and 3Center for Information Biology, National Institute of Genetics, Mishima, Shizuoka 411-8540, Japan","institution_ids":["https://openalex.org/I4210086780","https://openalex.org/I74801974","https://openalex.org/I113198587"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5081958819"],"corresponding_institution_ids":["https://openalex.org/I113198587","https://openalex.org/I4210086780","https://openalex.org/I74801974"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.7869,"has_fulltext":false,"cited_by_count":11,"citation_normalized_percentile":{"value":0.71604459,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"27","issue":"8","first_page":"1121","last_page":"1127"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9789000153541565,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9789000153541565,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.00430000014603138,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.0035000001080334187,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7719089984893799},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.7234678268432617},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.710719108581543},{"id":"https://openalex.org/keywords/java","display_name":"Java","score":0.5165978670120239},{"id":"https://openalex.org/keywords/biological-data","display_name":"Biological data","score":0.5157302021980286},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5023355484008789},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.4392356872558594},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.4325549006462097},{"id":"https://openalex.org/keywords/property","display_name":"Property (philosophy)","score":0.41938620805740356},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.37028834223747253},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.35228362679481506},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.30832427740097046},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.172835111618042},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.10150068998336792},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.08857858180999756}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7719089984893799},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.7234678268432617},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.710719108581543},{"id":"https://openalex.org/C548217200","wikidata":"https://www.wikidata.org/wiki/Q251","display_name":"Java","level":2,"score":0.5165978670120239},{"id":"https://openalex.org/C201797286","wikidata":"https://www.wikidata.org/wiki/Q4914986","display_name":"Biological data","level":2,"score":0.5157302021980286},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5023355484008789},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.4392356872558594},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.4325549006462097},{"id":"https://openalex.org/C189950617","wikidata":"https://www.wikidata.org/wiki/Q937228","display_name":"Property (philosophy)","level":2,"score":0.41938620805740356},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.37028834223747253},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.35228362679481506},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.30832427740097046},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.172835111618042},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.10150068998336792},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.08857858180999756},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D029701","descriptor_name":"Saccharomyces cerevisiae Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D029701","descriptor_name":"Saccharomyces cerevisiae Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D029701","descriptor_name":"Saccharomyces cerevisiae Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btr083","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr083","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/8/1121/17101990/btr083.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:21349867","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21349867","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:europepmc.org:2084534","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3072549","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"mag:1578137030","is_oa":false,"landing_page_url":"http://ci.nii.ac.jp/naid/110007990852","pdf_url":null,"source":{"id":"https://openalex.org/S52256385","display_name":"BIOSILICO","issn_l":"1478-5382","issn":["1478-5382","1878-1209"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":"BIOSILICO","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btr083","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr083","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/8/1121/17101990/btr083.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G8112751756","display_name":"Alleviating bottlenecks in interpretation of omics datasets","funder_award_id":"23710231","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"}],"funders":[{"id":"https://openalex.org/F4320334764","display_name":"Japan Society for the Promotion of Science","ror":"https://ror.org/00hhkn466"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":42,"referenced_works":["https://openalex.org/W1970640230","https://openalex.org/W1986181510","https://openalex.org/W1987984332","https://openalex.org/W1990312420","https://openalex.org/W1991645955","https://openalex.org/W2009187320","https://openalex.org/W2014587815","https://openalex.org/W2015586742","https://openalex.org/W2017248899","https://openalex.org/W2021296110","https://openalex.org/W2023098599","https://openalex.org/W2023208820","https://openalex.org/W2037439187","https://openalex.org/W2041703764","https://openalex.org/W2047940964","https://openalex.org/W2068813887","https://openalex.org/W2074755764","https://openalex.org/W2082340690","https://openalex.org/W2091789479","https://openalex.org/W2095293504","https://openalex.org/W2103342342","https://openalex.org/W2105406827","https://openalex.org/W2106420311","https://openalex.org/W2108434296","https://openalex.org/W2111597036","https://openalex.org/W2117412805","https://openalex.org/W2121046240","https://openalex.org/W2124166542","https://openalex.org/W2131548207","https://openalex.org/W2131681506","https://openalex.org/W2132058642","https://openalex.org/W2137043679","https://openalex.org/W2137522673","https://openalex.org/W2140192812","https://openalex.org/W2140635350","https://openalex.org/W2157082398","https://openalex.org/W2159654064","https://openalex.org/W2159675211","https://openalex.org/W2167846577","https://openalex.org/W2615147949","https://openalex.org/W3099768174","https://openalex.org/W6680055450"],"related_works":["https://openalex.org/W2155492529","https://openalex.org/W4252504573","https://openalex.org/W4385510321","https://openalex.org/W2101315668","https://openalex.org/W15348386","https://openalex.org/W2314128295","https://openalex.org/W4287026692","https://openalex.org/W1509942269","https://openalex.org/W2770735656","https://openalex.org/W2077895977"],"abstract_inverted_index":{"MOTIVATION:":[0],"Many":[1],"types":[2],"of":[3,10,43,71,75,95,117,168,177],"omics":[4],"data":[5,191],"are":[6,192],"compiled":[7],"as":[8,16,38],"lists":[9],"connections":[11],"between":[12],"elements":[13,28],"and":[14,23,29,66,109,144],"visualized":[15],"networks":[17,35,94,154],"or":[18],"graphs":[19],"where":[20],"the":[21,27,30],"nodes":[22,99],"edges":[24],"correspond":[25],"to":[26,77,132,138,159],"connections,":[31],"respectively.":[32],"However,":[33],"these":[34],"often":[36,120],"appear":[37],"'hair-balls'-with":[39],"a":[40,72,101,110,156],"large":[41,73],"number":[42],"extremely":[44],"tangled":[45],"edges-and":[46],"cannot":[47],"be":[48,133],"visually":[49],"interpreted.":[50],"RESULTS:":[51],"We":[52],"present":[53],"an":[54,78,87],"interactive,":[55],"multiscale":[56,166],"navigation":[57,167],"method":[58,83],"for":[59,122],"biological":[60,118,123],"networks.":[61],"Our":[62],"approach":[63],"can":[64],"automatically":[65],"rapidly":[67],"abstract":[68],"any":[69],"portion":[70],"network":[74,142],"interest":[76],"immediately":[79],"interpretable":[80],"extent.":[81],"The":[82],"is":[84,182],"based":[85],"on":[86],"ultrafast":[88],"graph":[89],"clustering":[90,112],"technique":[91,113],"that":[92,114],"abstracts":[93],"about":[96],"100":[97],"000":[98],"in":[100,155],"second":[102],"by":[103,135],"iteratively":[104],"grouping":[105],"densely":[106],"connected":[107],"portions":[108],"biological-property-based":[111],"takes":[115],"advantage":[116],"information":[119],"provided":[121],"entities":[124],"(e.g.":[125,171],"Gene":[126],"Ontology":[127],"terms).":[128],"It":[129],"was":[130],"confirmed":[131],"effective":[134],"applying":[136],"it":[137],"real":[139],"yeast":[140],"protein":[141],"data,":[143],"would":[145],"greatly":[146],"help":[147],"modern":[148],"biologists":[149],"faced":[150],"with":[151],"large,":[152],"complicated":[153],"similar":[157],"manner":[158],"how":[160],"Web":[161],"mapping":[162],"services":[163],"enable":[164],"interactive":[165],"geographical":[169],"maps":[170],"Google":[172],"Maps).":[173],"AVAILABILITY:":[174],"Java":[175],"implementation":[176],"our":[178],"method,":[179],"named":[180],"NaviCluster,":[181],"available":[183,193],"at":[184,194],"http://navicluster.cb.k.u-tokyo.ac.jp/.":[185],"CONTACT:":[186],"thanet@cb.k.u-tokyo.ac.jp":[187],"SUPPLEMENTARY":[188],"INFORMATION:":[189],"Supplementary":[190],"Bioinformatics":[195],"online.":[196]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2015,"cited_by_count":2},{"year":2012,"cited_by_count":6}],"updated_date":"2026-07-13T07:31:44.756512","created_date":"2025-10-10T00:00:00"}