{"id":"https://openalex.org/W2156435185","doi":"https://doi.org/10.1093/bioinformatics/btr082","title":"The effects of feedback loops on disease comorbidity in human signaling networks","display_name":"The effects of feedback loops on disease comorbidity in human signaling networks","publication_year":2011,"publication_date":"2011-02-15","ids":{"openalex":"https://openalex.org/W2156435185","doi":"https://doi.org/10.1093/bioinformatics/btr082","mag":"2156435185","pmid":"https://pubmed.ncbi.nlm.nih.gov/21325303"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btr082","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr082","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/8/1113/17101710/btr082.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/27/8/1113/17101710/btr082.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5032004195","display_name":"Duc\u2010Hau Le","orcid":"https://orcid.org/0000-0002-4951-5916"},"institutions":[{"id":"https://openalex.org/I40542001","display_name":"University of Ulsan","ror":"https://ror.org/02c2f8975","country_code":"KR","type":"education","lineage":["https://openalex.org/I40542001"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Duc-Hau Le","raw_affiliation_strings":["School of Computer Engineering and Information Technology, University of Ulsan, 93 Daehak-ro, Nam-gu, Ulsan 680-749, Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Engineering and Information Technology, University of Ulsan, 93 Daehak-ro, Nam-gu, Ulsan 680-749, Korea","institution_ids":["https://openalex.org/I40542001"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5088493382","display_name":"Yung\u2010Keun Kwon","orcid":"https://orcid.org/0000-0001-5879-8703"},"institutions":[{"id":"https://openalex.org/I40542001","display_name":"University of Ulsan","ror":"https://ror.org/02c2f8975","country_code":"KR","type":"education","lineage":["https://openalex.org/I40542001"]}],"countries":["KR"],"is_corresponding":true,"raw_author_name":"Yung-Keun Kwon","raw_affiliation_strings":["School of Computer Engineering and Information Technology, University of Ulsan, 93 Daehak-ro, Nam-gu, Ulsan 680-749, Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Engineering and Information Technology, University of Ulsan, 93 Daehak-ro, Nam-gu, Ulsan 680-749, Korea","institution_ids":["https://openalex.org/I40542001"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5088493382"],"corresponding_institution_ids":["https://openalex.org/I40542001"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.918,"has_fulltext":true,"cited_by_count":20,"citation_normalized_percentile":{"value":0.74152258,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"27","issue":"8","first_page":"1113","last_page":"1120"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.660099983215332,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.660099983215332,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.15129999816417694,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.017000000923871994,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/comorbidity","display_name":"Comorbidity","score":0.7392656207084656},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.5620882511138916},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.49510565400123596},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.34949570894241333},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.29301297664642334},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.2634407877922058},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.17871499061584473}],"concepts":[{"id":"https://openalex.org/C2779159551","wikidata":"https://www.wikidata.org/wiki/Q1414874","display_name":"Comorbidity","level":2,"score":0.7392656207084656},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.5620882511138916},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.49510565400123596},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.34949570894241333},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.29301297664642334},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.2634407877922058},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.17871499061584473}],"mesh":[{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015897","descriptor_name":"Comorbidity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015897","descriptor_name":"Comorbidity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015897","descriptor_name":"Comorbidity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D025461","descriptor_name":"Feedback, Physiological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D025461","descriptor_name":"Feedback, Physiological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D025461","descriptor_name":"Feedback, Physiological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btr082","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr082","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/8/1113/17101710/btr082.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:21325303","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21325303","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btr082","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr082","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/8/1113/17101710/btr082.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320320671","display_name":"National Research Foundation","ror":"https://ror.org/05s0g1g46"},{"id":"https://openalex.org/F4320322120","display_name":"National Research Foundation of Korea","ror":"https://ror.org/013aysd81"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2156435185.pdf","grobid_xml":"https://content.openalex.org/works/W2156435185.grobid-xml"},"referenced_works_count":53,"referenced_works":["https://openalex.org/W109776391","https://openalex.org/W178366283","https://openalex.org/W1599207601","https://openalex.org/W1981898075","https://openalex.org/W1987815409","https://openalex.org/W1989684700","https://openalex.org/W1991980854","https://openalex.org/W1993346355","https://openalex.org/W1994803330","https://openalex.org/W1998831452","https://openalex.org/W2008620264","https://openalex.org/W2008855387","https://openalex.org/W2010707723","https://openalex.org/W2011428281","https://openalex.org/W2015713889","https://openalex.org/W2032582936","https://openalex.org/W2035595951","https://openalex.org/W2037992356","https://openalex.org/W2042459594","https://openalex.org/W2044890688","https://openalex.org/W2048481655","https://openalex.org/W2049038912","https://openalex.org/W2052549489","https://openalex.org/W2057626690","https://openalex.org/W2065546165","https://openalex.org/W2074842347","https://openalex.org/W2075941967","https://openalex.org/W2083045667","https://openalex.org/W2083927932","https://openalex.org/W2092755129","https://openalex.org/W2095701698","https://openalex.org/W2097263107","https://openalex.org/W2098045561","https://openalex.org/W2098501743","https://openalex.org/W2101181377","https://openalex.org/W2101744311","https://openalex.org/W2106386862","https://openalex.org/W2111123076","https://openalex.org/W2116298046","https://openalex.org/W2119271291","https://openalex.org/W2132935366","https://openalex.org/W2137082708","https://openalex.org/W2137200212","https://openalex.org/W2146831240","https://openalex.org/W2151820055","https://openalex.org/W2152415104","https://openalex.org/W2153114711","https://openalex.org/W2153624566","https://openalex.org/W2161473477","https://openalex.org/W2164348551","https://openalex.org/W2167885266","https://openalex.org/W2168894308","https://openalex.org/W2171835071"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W1978188354","https://openalex.org/W3141224953","https://openalex.org/W2155091457","https://openalex.org/W2765738011","https://openalex.org/W4387318495","https://openalex.org/W2002142585","https://openalex.org/W2157868280","https://openalex.org/W4240532399","https://openalex.org/W2795699014"],"abstract_inverted_index":{"MOTIVATION:":[0],"In":[1],"general,":[2],"diseases":[3,31],"are":[4,24,153,233],"more":[5,147,169],"likely":[6,148],"to":[7,83,93,149],"be":[8],"comorbid":[9,150],"if":[10,151],"they":[11,152],"share":[12,40,208],"associated":[13,42],"genes":[14,43,118],"or":[15,44],"molecular":[16],"interactions":[17],"in":[18,73,119],"a":[19,26,52,66,80,130,143,165,223],"cellular":[20],"process.":[21],"However,":[22],"there":[23,128],"still":[25],"number":[27,173],"of":[28,30,61,103,111,137,157,174,182,197],"pairs":[29,204],"which":[32,55],"show":[33],"relatively":[34],"high":[35],"comorbidity":[36,86,108,134,194],"but":[37],"do":[38,206],"not":[39,207],"any":[41,209],"interactions.":[45],"This":[46,140],"observation":[47],"raises":[48],"the":[49,58,74,85,116,120,172,190],"need":[50],"for":[51,202],"novel":[53],"factor":[54],"can":[56],"explain":[57,84],"underlying":[59],"mechanism":[60],"comorbidity.":[62],"We":[63,125,160],"here":[64],"consider":[65],"feedback":[67],"loop":[68],"(FBL)":[69],"structure":[70],"ubiquitously":[71],"found":[72,126],"human":[75,121],"cell":[76,122],"signaling":[77,123],"network":[78,97,225],"as":[79],"key":[81],"motif":[82],"phenomenon,":[87],"since":[88],"it":[89],"is":[90,129,146,168,178],"well":[91],"known":[92],"have":[94],"effects":[95],"on":[96,222],"dynamics.":[98],"RESULTS:":[99],"For":[100],"every":[101],"pair":[102,145],"diseases,":[104],"we":[105,187,213],"examined":[106],"its":[107],"and":[109,135,195],"length":[110,136,196],"all":[112,215],"FBLs":[113,156,177,199],"involved":[114,138,176,184,198],"by":[115],"disease-associated":[117,210],"network.":[124],"that":[127,142,163,181,189,205],"negative":[131,166,183,191],"relationship":[132,167,192],"between":[133,193],"FBLs.":[139,185],"indicates":[141],"disease":[144,203],"connected":[154],"with":[155],"shorter":[158],"length.":[159],"additionally":[161],"showed":[162],"such":[164],"obvious":[170],"when":[171],"positive":[175],"larger":[179],"than":[180],"Moreover,":[186],"observed":[188],"holds":[200],"especially":[201],"genes.":[211],"Finally,":[212],"proved":[214],"these":[216],"results":[217],"through":[218],"intensive":[219],"simulations,":[220],"based":[221],"Boolean":[224],"model.":[226],"CONTACT:":[227],"kwonyk@ulsan.ac.kr":[228],"SUPPLEMENTARY":[229],"INFORMATION:":[230],"Supplementary":[231],"data":[232],"available":[234],"at":[235],"BioInformatics":[236],"online.":[237]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":2}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
