{"id":"https://openalex.org/W2133550211","doi":"https://doi.org/10.1093/bioinformatics/btr058","title":"A common layer of interoperability for biomedical ontologies based on OWL EL","display_name":"A common layer of interoperability for biomedical ontologies based on OWL EL","publication_year":2011,"publication_date":"2011-02-21","ids":{"openalex":"https://openalex.org/W2133550211","doi":"https://doi.org/10.1093/bioinformatics/btr058","mag":"2133550211","pmid":"https://pubmed.ncbi.nlm.nih.gov/21343142"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btr058","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr058","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/7/1001/48868919/bioinformatics_27_7_1001.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/27/7/1001/48868919/bioinformatics_27_7_1001.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5043808311","display_name":"Robert Hoehndorf","orcid":"https://orcid.org/0000-0001-8149-5890"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]},{"id":"https://openalex.org/I67031392","display_name":"Carleton University","ror":"https://ror.org/02qtvee93","country_code":"CA","type":"education","lineage":["https://openalex.org/I67031392"]}],"countries":["CA","GB"],"is_corresponding":true,"raw_author_name":"Robert Hoehndorf","raw_affiliation_strings":["1 Department of Genetics, University of Cambridge, Downing Street, Cambridge, Cambridge CB2 3EH, UK, 2Department of Biology, Institute of Biochemistry and School of Computer Science, Carleton University, 1125 Colonel By Drive, Ottawa, Ontario K1S 5B6, Canada, 3European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK, 4Department of Physiology, Development and Neuroscience, University of Cambridge, Downing street, Cambridge CB2 3EG, UK and 5The Jackson Laboratory, 600, Main Street, Bar Harbor, ME 04609-1500, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Genetics, University of Cambridge, Downing Street, Cambridge, Cambridge CB2 3EH, UK, 2Department of Biology, Institute of Biochemistry and School of Computer Science, Carleton University, 1125 Colonel By Drive, Ottawa, Ontario K1S 5B6, Canada, 3European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK, 4Department of Physiology, Development and Neuroscience, University of Cambridge, Downing street, Cambridge CB2 3EG, UK and 5The Jackson Laboratory, 600, Main Street, Bar Harbor, ME 04609-1500, USA","institution_ids":["https://openalex.org/I241749","https://openalex.org/I1303153112","https://openalex.org/I67031392"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044836472","display_name":"Michel Dumontier","orcid":"https://orcid.org/0000-0003-4727-9435"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]},{"id":"https://openalex.org/I67031392","display_name":"Carleton University","ror":"https://ror.org/02qtvee93","country_code":"CA","type":"education","lineage":["https://openalex.org/I67031392"]}],"countries":["CA","GB"],"is_corresponding":false,"raw_author_name":"Michel Dumontier","raw_affiliation_strings":["1 Department of Genetics, University of Cambridge, Downing Street, Cambridge, Cambridge CB2 3EH, UK, 2Department of Biology, Institute of Biochemistry and School of Computer Science, Carleton University, 1125 Colonel By Drive, Ottawa, Ontario K1S 5B6, Canada, 3European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK, 4Department of Physiology, Development and Neuroscience, University of Cambridge, Downing street, Cambridge CB2 3EG, UK and 5The Jackson Laboratory, 600, Main Street, Bar Harbor, ME 04609-1500, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Genetics, University of Cambridge, Downing Street, Cambridge, Cambridge CB2 3EH, UK, 2Department of Biology, Institute of Biochemistry and School of Computer Science, Carleton University, 1125 Colonel By Drive, Ottawa, Ontario K1S 5B6, Canada, 3European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK, 4Department of Physiology, Development and Neuroscience, University of Cambridge, Downing street, Cambridge CB2 3EG, UK and 5The Jackson Laboratory, 600, Main Street, Bar Harbor, ME 04609-1500, USA","institution_ids":["https://openalex.org/I241749","https://openalex.org/I1303153112","https://openalex.org/I67031392"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012061875","display_name":"Anika Oellrich","orcid":null},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]},{"id":"https://openalex.org/I67031392","display_name":"Carleton University","ror":"https://ror.org/02qtvee93","country_code":"CA","type":"education","lineage":["https://openalex.org/I67031392"]}],"countries":["CA","GB"],"is_corresponding":false,"raw_author_name":"Anika Oellrich","raw_affiliation_strings":["1 Department of Genetics, University of Cambridge, Downing Street, Cambridge, Cambridge CB2 3EH, UK, 2Department of Biology, Institute of Biochemistry and School of Computer Science, Carleton University, 1125 Colonel By Drive, Ottawa, Ontario K1S 5B6, Canada, 3European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK, 4Department of Physiology, Development and Neuroscience, University of Cambridge, Downing street, Cambridge CB2 3EG, UK and 5The Jackson Laboratory, 600, Main Street, Bar Harbor, ME 04609-1500, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Genetics, University of Cambridge, Downing Street, Cambridge, Cambridge CB2 3EH, UK, 2Department of Biology, Institute of Biochemistry and School of Computer Science, Carleton University, 1125 Colonel By Drive, Ottawa, Ontario K1S 5B6, Canada, 3European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK, 4Department of Physiology, Development and Neuroscience, University of Cambridge, Downing street, Cambridge CB2 3EG, UK and 5The Jackson Laboratory, 600, Main Street, Bar Harbor, ME 04609-1500, USA","institution_ids":["https://openalex.org/I241749","https://openalex.org/I1303153112","https://openalex.org/I67031392"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034436640","display_name":"Sarala Wimalaratne","orcid":"https://orcid.org/0000-0002-5355-2576"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]},{"id":"https://openalex.org/I67031392","display_name":"Carleton University","ror":"https://ror.org/02qtvee93","country_code":"CA","type":"education","lineage":["https://openalex.org/I67031392"]}],"countries":["CA","GB"],"is_corresponding":false,"raw_author_name":"Sarala Wimalaratne","raw_affiliation_strings":["1 Department of Genetics, University of Cambridge, Downing Street, Cambridge, Cambridge CB2 3EH, UK, 2Department of Biology, Institute of Biochemistry and School of Computer Science, Carleton University, 1125 Colonel By Drive, Ottawa, Ontario K1S 5B6, Canada, 3European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK, 4Department of Physiology, Development and Neuroscience, University of Cambridge, Downing street, Cambridge CB2 3EG, UK and 5The Jackson Laboratory, 600, Main Street, Bar Harbor, ME 04609-1500, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Genetics, University of Cambridge, Downing Street, Cambridge, Cambridge CB2 3EH, UK, 2Department of Biology, Institute of Biochemistry and School of Computer Science, Carleton University, 1125 Colonel By Drive, Ottawa, Ontario K1S 5B6, Canada, 3European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK, 4Department of Physiology, Development and Neuroscience, University of Cambridge, Downing street, Cambridge CB2 3EG, UK and 5The Jackson Laboratory, 600, Main Street, Bar Harbor, ME 04609-1500, USA","institution_ids":["https://openalex.org/I241749","https://openalex.org/I1303153112","https://openalex.org/I67031392"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006224704","display_name":"Dietrich Rebholz\u2010Schuhmann","orcid":"https://orcid.org/0000-0002-1018-0370"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]},{"id":"https://openalex.org/I67031392","display_name":"Carleton University","ror":"https://ror.org/02qtvee93","country_code":"CA","type":"education","lineage":["https://openalex.org/I67031392"]}],"countries":["CA","GB"],"is_corresponding":false,"raw_author_name":"Dietrich Rebholz-Schuhmann","raw_affiliation_strings":["1 Department of Genetics, University of Cambridge, Downing Street, Cambridge, Cambridge CB2 3EH, UK, 2Department of Biology, Institute of Biochemistry and School of Computer Science, Carleton University, 1125 Colonel By Drive, Ottawa, Ontario K1S 5B6, Canada, 3European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK, 4Department of Physiology, Development and Neuroscience, University of Cambridge, Downing street, Cambridge CB2 3EG, UK and 5The Jackson Laboratory, 600, Main Street, Bar Harbor, ME 04609-1500, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Genetics, University of Cambridge, Downing Street, Cambridge, Cambridge CB2 3EH, UK, 2Department of Biology, Institute of Biochemistry and School of Computer Science, Carleton University, 1125 Colonel By Drive, Ottawa, Ontario K1S 5B6, Canada, 3European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK, 4Department of Physiology, Development and Neuroscience, University of Cambridge, Downing street, Cambridge CB2 3EG, UK and 5The Jackson Laboratory, 600, Main Street, Bar Harbor, ME 04609-1500, USA","institution_ids":["https://openalex.org/I241749","https://openalex.org/I1303153112","https://openalex.org/I67031392"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059588755","display_name":"Paul N. Schofield","orcid":"https://orcid.org/0000-0002-5111-7263"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]},{"id":"https://openalex.org/I67031392","display_name":"Carleton University","ror":"https://ror.org/02qtvee93","country_code":"CA","type":"education","lineage":["https://openalex.org/I67031392"]}],"countries":["CA","GB"],"is_corresponding":false,"raw_author_name":"Paul Schofield","raw_affiliation_strings":["1 Department of Genetics, University of Cambridge, Downing Street, Cambridge, Cambridge CB2 3EH, UK, 2Department of Biology, Institute of Biochemistry and School of Computer Science, Carleton University, 1125 Colonel By Drive, Ottawa, Ontario K1S 5B6, Canada, 3European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK, 4Department of Physiology, Development and Neuroscience, University of Cambridge, Downing street, Cambridge CB2 3EG, UK and 5The Jackson Laboratory, 600, Main Street, Bar Harbor, ME 04609-1500, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Genetics, University of Cambridge, Downing Street, Cambridge, Cambridge CB2 3EH, UK, 2Department of Biology, Institute of Biochemistry and School of Computer Science, Carleton University, 1125 Colonel By Drive, Ottawa, Ontario K1S 5B6, Canada, 3European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK, 4Department of Physiology, Development and Neuroscience, University of Cambridge, Downing street, Cambridge CB2 3EG, UK and 5The Jackson Laboratory, 600, Main Street, Bar Harbor, ME 04609-1500, USA","institution_ids":["https://openalex.org/I241749","https://openalex.org/I1303153112","https://openalex.org/I67031392"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5089900113","display_name":"Georgios V. Gkoutos","orcid":"https://orcid.org/0000-0002-2061-091X"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]},{"id":"https://openalex.org/I67031392","display_name":"Carleton University","ror":"https://ror.org/02qtvee93","country_code":"CA","type":"education","lineage":["https://openalex.org/I67031392"]}],"countries":["CA","GB"],"is_corresponding":false,"raw_author_name":"Georgios V. Gkoutos","raw_affiliation_strings":["1 Department of Genetics, University of Cambridge, Downing Street, Cambridge, Cambridge CB2 3EH, UK, 2Department of Biology, Institute of Biochemistry and School of Computer Science, Carleton University, 1125 Colonel By Drive, Ottawa, Ontario K1S 5B6, Canada, 3European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK, 4Department of Physiology, Development and Neuroscience, University of Cambridge, Downing street, Cambridge CB2 3EG, UK and 5The Jackson Laboratory, 600, Main Street, Bar Harbor, ME 04609-1500, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Genetics, University of Cambridge, Downing Street, Cambridge, Cambridge CB2 3EH, UK, 2Department of Biology, Institute of Biochemistry and School of Computer Science, Carleton University, 1125 Colonel By Drive, Ottawa, Ontario K1S 5B6, Canada, 3European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK, 4Department of Physiology, Development and Neuroscience, University of Cambridge, Downing street, Cambridge CB2 3EG, UK and 5The Jackson Laboratory, 600, Main Street, Bar Harbor, ME 04609-1500, USA","institution_ids":["https://openalex.org/I241749","https://openalex.org/I1303153112","https://openalex.org/I67031392"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5043808311"],"corresponding_institution_ids":["https://openalex.org/I1303153112","https://openalex.org/I241749","https://openalex.org/I67031392"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":3.4597,"has_fulltext":true,"cited_by_count":45,"citation_normalized_percentile":{"value":0.9340361,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"27","issue":"7","first_page":"1001","last_page":"1008"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9161999821662903,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9161999821662903,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.06719999760389328,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.004900000058114529,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.802818775177002},{"id":"https://openalex.org/keywords/interoperability","display_name":"Interoperability","score":0.7607327699661255},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.7276279926300049},{"id":"https://openalex.org/keywords/open-biomedical-ontologies","display_name":"Open Biomedical Ontologies","score":0.6933705806732178},{"id":"https://openalex.org/keywords/web-ontology-language","display_name":"Web Ontology Language","score":0.6549632549285889},{"id":"https://openalex.org/keywords/idef5","display_name":"IDEF5","score":0.6254204511642456},{"id":"https://openalex.org/keywords/semantics","display_name":"Semantics (computer science)","score":0.5320754051208496},{"id":"https://openalex.org/keywords/knowledge-representation-and-reasoning","display_name":"Knowledge representation and reasoning","score":0.5254049897193909},{"id":"https://openalex.org/keywords/ontology-components","display_name":"Ontology components","score":0.4665301442146301},{"id":"https://openalex.org/keywords/upper-ontology","display_name":"Upper ontology","score":0.4274655878543854},{"id":"https://openalex.org/keywords/description-logic","display_name":"Description logic","score":0.4237672686576843},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4122128486633301},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3768414556980133},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.35299205780029297},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.33365926146507263},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3296608030796051},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.221273273229599},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.1830449104309082},{"id":"https://openalex.org/keywords/ontology-alignment","display_name":"Ontology alignment","score":0.1760108768939972}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.802818775177002},{"id":"https://openalex.org/C20136886","wikidata":"https://www.wikidata.org/wiki/Q749647","display_name":"Interoperability","level":2,"score":0.7607327699661255},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.7276279926300049},{"id":"https://openalex.org/C137982476","wikidata":"https://www.wikidata.org/wiki/Q7072326","display_name":"Open Biomedical Ontologies","level":5,"score":0.6933705806732178},{"id":"https://openalex.org/C101230327","wikidata":"https://www.wikidata.org/wiki/Q826165","display_name":"Web Ontology Language","level":3,"score":0.6549632549285889},{"id":"https://openalex.org/C118248724","wikidata":"https://www.wikidata.org/wiki/Q5969997","display_name":"IDEF5","level":4,"score":0.6254204511642456},{"id":"https://openalex.org/C184337299","wikidata":"https://www.wikidata.org/wiki/Q1437428","display_name":"Semantics (computer science)","level":2,"score":0.5320754051208496},{"id":"https://openalex.org/C161301231","wikidata":"https://www.wikidata.org/wiki/Q3478658","display_name":"Knowledge representation and reasoning","level":2,"score":0.5254049897193909},{"id":"https://openalex.org/C154210476","wikidata":"https://www.wikidata.org/wiki/Q7095057","display_name":"Ontology components","level":5,"score":0.4665301442146301},{"id":"https://openalex.org/C78726541","wikidata":"https://www.wikidata.org/wiki/Q3882785","display_name":"Upper ontology","level":3,"score":0.4274655878543854},{"id":"https://openalex.org/C102993220","wikidata":"https://www.wikidata.org/wiki/Q387196","display_name":"Description logic","level":2,"score":0.4237672686576843},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4122128486633301},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3768414556980133},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.35299205780029297},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.33365926146507263},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3296608030796051},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.221273273229599},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.1830449104309082},{"id":"https://openalex.org/C98893333","wikidata":"https://www.wikidata.org/wiki/Q4339878","display_name":"Ontology alignment","level":4,"score":0.1760108768939972},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":7,"locations":[{"id":"doi:10.1093/bioinformatics/btr058","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr058","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/7/1001/48868919/bioinformatics_27_7_1001.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:21343142","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21343142","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:cris.maastrichtuniversity.nl:openaire/28573762-0227-4e00-b193-4510cfad9a10","is_oa":true,"landing_page_url":"https://cris.maastrichtuniversity.nl/en/publications/28573762-0227-4e00-b193-4510cfad9a10","pdf_url":null,"source":{"id":"https://openalex.org/S4306402616","display_name":"Research Publications (Maastricht University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I34352273","host_organization_name":"Maastricht University","host_organization_lineage":["https://openalex.org/I34352273"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Hoehndorf, R, Dumontier, M, Oellrich, A, Wimalaratne, S, Rebholz-Schuhmann, D, Schofield, P & Gkoutos, G V 2011, 'A common layer of interoperability for biomedical ontologies based on OWL EL', Bioinformatics, vol. 27, no. 7, pp. 1001-1008. https://doi.org/10.1093/bioinformatics/btr058","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:pubmedcentral.nih.gov:3065691","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3065691","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:kclpure.kcl.ac.uk:publications/a035c025-0979-4b2d-94b4-a84428c632d6","is_oa":false,"landing_page_url":"https://kclpure.kcl.ac.uk/portal/en/publications/a035c025-0979-4b2d-94b4-a84428c632d6","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Hoehndorf , R , Dumontier , M , Oellrich , A , Wimalaratne , S , Rebholz-Schuhmann , D , Schofield , P &amp; Gkoutos , G V 2011 , ' A common layer of interoperability for biomedical ontologies based on OWL EL ' , BIOINFORMATICS , vol. 27 , no. 7 , pp. 1001-1008 . https://doi.org/10.1093/bioinformatics/btr058","raw_type":"article"},{"id":"pmh:oai:mouseion.jax.org:stfb2011-1089","is_oa":false,"landing_page_url":"https://mouseion.jax.org/stfb2011/90","pdf_url":null,"source":{"id":"https://openalex.org/S4377196421","display_name":"The Mouseion at the JAXlibrary (Jackson Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210115256","host_organization_name":"Jackson Laboratory","host_organization_lineage":["https://openalex.org/I4210115256"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Faculty Research 2011","raw_type":"text"},{"id":"pmh:oai:pure.atira.dk:openaire_cris_publications/a0962266-5d5c-46a8-b92f-3dac4cd461a1","is_oa":false,"landing_page_url":"https://research.birmingham.ac.uk/en/publications/a0962266-5d5c-46a8-b92f-3dac4cd461a1","pdf_url":null,"source":{"id":"https://openalex.org/S4306402634","display_name":"University of Birmingham Research Portal (University of Birmingham)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I79619799","host_organization_name":"University of Birmingham","host_organization_lineage":["https://openalex.org/I79619799"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Hoehndorf, R, Dumontier, M, Oellrich, A, Wimalaratne, S, Rebholz-Schuhmann, D, Schofield, P & Gkoutos, G V 2011, 'A common layer of interoperability for biomedical ontologies based on OWL EL', Bioinformatics, vol. 27, no. 7, pp. 1001-1008. https://doi.org/10.1093/bioinformatics/btr058","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btr058","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr058","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/7/1001/48868919/bioinformatics_27_7_1001.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1680969023","display_name":"Researching Interoperability using Core Reference Datasets and Ontologies for the Virtual Physiological Human","funder_award_id":"248502","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G2272423805","display_name":null,"funder_award_id":"BB/G004358/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G6941470397","display_name":null,"funder_award_id":"R01 HG004838-02","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"},{"id":"https://openalex.org/G7500877913","display_name":null,"funder_award_id":"BBG0043581","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320313288","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52"},{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320334593","display_name":"Natural Sciences and Engineering Research Council of Canada","ror":"https://ror.org/01h531d29"},{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"},{"id":"https://openalex.org/F4320337348","display_name":"National Human Genome Research Institute","ror":"https://ror.org/00baak391"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2133550211.pdf","grobid_xml":"https://content.openalex.org/works/W2133550211.grobid-xml"},"referenced_works_count":66,"referenced_works":["https://openalex.org/W649125","https://openalex.org/W58140099","https://openalex.org/W62327733","https://openalex.org/W64819943","https://openalex.org/W124940209","https://openalex.org/W191751253","https://openalex.org/W1482585805","https://openalex.org/W1511056241","https://openalex.org/W1587148115","https://openalex.org/W1597785952","https://openalex.org/W1678959094","https://openalex.org/W1757909678","https://openalex.org/W1880680814","https://openalex.org/W1979218314","https://openalex.org/W1991183254","https://openalex.org/W2007117925","https://openalex.org/W2022451103","https://openalex.org/W2028043278","https://openalex.org/W2084998011","https://openalex.org/W2100490186","https://openalex.org/W2103017472","https://openalex.org/W2103260426","https://openalex.org/W2109003533","https://openalex.org/W2112589398","https://openalex.org/W2113142309","https://openalex.org/W2121723702","https://openalex.org/W2126434293","https://openalex.org/W2130367921","https://openalex.org/W2131660156","https://openalex.org/W2133109597","https://openalex.org/W2136410628","https://openalex.org/W2136961946","https://openalex.org/W2139315672","https://openalex.org/W2141970373","https://openalex.org/W2151579561","https://openalex.org/W2156622158","https://openalex.org/W2162361752","https://openalex.org/W2162385209","https://openalex.org/W2162595361","https://openalex.org/W2163670493","https://openalex.org/W2163685645","https://openalex.org/W2166718065","https://openalex.org/W2248098515","https://openalex.org/W2293330139","https://openalex.org/W2400046567","https://openalex.org/W2615375216","https://openalex.org/W3099593821","https://openalex.org/W3101974058","https://openalex.org/W3156599292","https://openalex.org/W4238201507","https://openalex.org/W4285719527","https://openalex.org/W6602418582","https://openalex.org/W6605117347","https://openalex.org/W6606137684","https://openalex.org/W6607769016","https://openalex.org/W6631625283","https://openalex.org/W6637280203","https://openalex.org/W6639461554","https://openalex.org/W6644900842","https://openalex.org/W6652229373","https://openalex.org/W6674867552","https://openalex.org/W6676687238","https://openalex.org/W6681110838","https://openalex.org/W6683875818","https://openalex.org/W6785312197","https://openalex.org/W6785346233"],"related_works":["https://openalex.org/W2942194862","https://openalex.org/W1801798365","https://openalex.org/W4290780032","https://openalex.org/W1494571806","https://openalex.org/W991275336","https://openalex.org/W4249406324","https://openalex.org/W2399216429","https://openalex.org/W1537617436","https://openalex.org/W2401209741","https://openalex.org/W184366147"],"abstract_inverted_index":{"MOTIVATION:":[0],"Ontologies":[1],"are":[2,144,239],"essential":[3],"in":[4,51],"biomedical":[5,60,173,208],"research":[6],"due":[7],"to":[8,11,53,99,170,210,217],"their":[9,55,237],"ability":[10],"semantically":[12],"integrate":[13],"content":[14],"from":[15,182,230,241],"different":[16],"scientific":[17,219],"databases":[18],"and":[19,27,42,67,78,103,115,142,146,151,175,213,232,236],"resources.":[20],"Their":[21],"application":[22],"improves":[23],"capabilities":[24],"for":[25,39,195],"querying":[26],"mining":[28],"biological":[29],"knowledge.":[30],"An":[31],"increasing":[32],"number":[33],"of":[34,91,95,107,134,156,163,179,191,202],"ontologies":[35,61,74,124,174,180,209,235],"is":[36,45,75,84,228],"being":[37],"developed":[38],"this":[40,183],"purpose,":[41],"considerable":[43],"effort":[44],"invested":[46],"into":[47,125],"formally":[48],"defining":[49],"them":[50],"order":[52],"represent":[54],"semantics":[56],"explicitly.":[57],"However,":[58],"current":[59],"do":[62],"not":[63],"facilitate":[64],"data":[65],"integration":[66],"interoperability":[68,109,193],"yet,":[69],"since":[70],"reasoning":[71,102,157],"over":[72],"these":[73],"very":[76],"complex":[77,215],"cannot":[79],"be":[80],"performed":[81],"efficiently":[82],"or":[83],"even":[85],"impossible.":[86],"We":[87,113,137,166],"propose":[88],"the":[89,105,126,132,149,153,160,171,196,200],"use":[90,133],"less":[92],"expressive":[93],"subsets":[94],"ontology":[96],"representation":[97],"languages":[98],"enable":[100],"efficient":[101],"achieve":[104],"goal":[106],"genuine":[108],"between":[110],"ontologies.":[111],"RESULTS:":[112],"present":[114],"evaluate":[116],"EL":[117,128,168,185,225],"Vira,":[118],"a":[119,177,188],"framework":[120],"that":[121,205],"transforms":[122],"OWL":[123,127,140],"subset,":[129],"thereby":[130],"enabling":[131],"tractable":[135],"reasoning.":[136],"illustrate":[138],"which":[139],"constructs":[141],"inferences":[143,212],"kept":[145],"lost":[147],"following":[148],"conversion":[150],"demonstrate":[152],"performance":[154],"gain":[155],"indicated":[158],"by":[159],"significant":[161],"reduction":[162],"processing":[164],"time.":[165],"applied":[167],"Vira":[169,186,226],"open":[172],"provide":[176],"repository":[178],"resulting":[181],"conversion.":[184],"creates":[187],"common":[189],"layer":[190],"ontological":[192],"that,":[194],"first":[197],"time,":[198],"enables":[199],"creation":[201],"software":[203,227],"solutions":[204],"can":[206],"employ":[207],"perform":[211],"answer":[214],"queries":[216],"support":[218],"analyses.":[220],"AVAILABILITY":[221],"AND":[222],"IMPLEMENTATION:":[223],"The":[224],"available":[229,240],"http://el-vira.googlecode.com":[231],"converted":[233],"OBO":[234],"mappings":[238],"http://bioonto.gen.cam.ac.uk/el-ont.":[242]},"counts_by_year":[{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":5},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":12}],"updated_date":"2026-06-23T06:36:01.041984","created_date":"2025-10-10T00:00:00"}
