{"id":"https://openalex.org/W2102001700","doi":"https://doi.org/10.1093/bioinformatics/btr051","title":"SIMA: Simultaneous Multiple Alignment of LC/MS Peak Lists","display_name":"SIMA: Simultaneous Multiple Alignment of LC/MS Peak Lists","publication_year":2011,"publication_date":"2011-02-03","ids":{"openalex":"https://openalex.org/W2102001700","doi":"https://doi.org/10.1093/bioinformatics/btr051","mag":"2102001700","pmid":"https://pubmed.ncbi.nlm.nih.gov/21296750"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btr051","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr051","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/7/987/16902314/btr051.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/27/7/987/16902314/btr051.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5044044433","display_name":"Bj\u00f6rn Vo\u00df","orcid":"https://orcid.org/0000-0002-5377-2800"},"institutions":[{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Bj\u00f6rn Voss","raw_affiliation_strings":["Interdisciplinary Center for Scientific Computing, University of Heidelberg, Germany"],"affiliations":[{"raw_affiliation_string":"Interdisciplinary Center for Scientific Computing, University of Heidelberg, Germany","institution_ids":["https://openalex.org/I223822909"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075359867","display_name":"Michael Hanselmann","orcid":"https://orcid.org/0009-0009-6471-4049"},"institutions":[{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Michael Hanselmann","raw_affiliation_strings":["Interdisciplinary Center for Scientific Computing, University of Heidelberg, Germany"],"affiliations":[{"raw_affiliation_string":"Interdisciplinary Center for Scientific Computing, University of Heidelberg, Germany","institution_ids":["https://openalex.org/I223822909"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005996110","display_name":"Bernhard Y. Renard","orcid":"https://orcid.org/0000-0003-4589-9809"},"institutions":[{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Bernhard Y. Renard","raw_affiliation_strings":["Interdisciplinary Center for Scientific Computing, University of Heidelberg, Germany"],"affiliations":[{"raw_affiliation_string":"Interdisciplinary Center for Scientific Computing, University of Heidelberg, Germany","institution_ids":["https://openalex.org/I223822909"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109182704","display_name":"Martin Lindner","orcid":null},"institutions":[{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Martin S. Lindner","raw_affiliation_strings":["Interdisciplinary Center for Scientific Computing, University of Heidelberg, Germany"],"affiliations":[{"raw_affiliation_string":"Interdisciplinary Center for Scientific Computing, University of Heidelberg, Germany","institution_ids":["https://openalex.org/I223822909"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110454166","display_name":"Ullrich K\u00f6the","orcid":null},"institutions":[{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Ullrich K\u00f6the","raw_affiliation_strings":["Interdisciplinary Center for Scientific Computing, University of Heidelberg, Germany"],"affiliations":[{"raw_affiliation_string":"Interdisciplinary Center for Scientific Computing, University of Heidelberg, Germany","institution_ids":["https://openalex.org/I223822909"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044068960","display_name":"Marc Kirchner","orcid":null},"institutions":[{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Marc Kirchner","raw_affiliation_strings":["Interdisciplinary Center for Scientific Computing, University of Heidelberg, Germany"],"affiliations":[{"raw_affiliation_string":"Interdisciplinary Center for Scientific Computing, University of Heidelberg, Germany","institution_ids":["https://openalex.org/I223822909"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5020048224","display_name":"Fred A. Hamprecht","orcid":"https://orcid.org/0000-0003-4148-5043"},"institutions":[{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Fred A. Hamprecht","raw_affiliation_strings":["Interdisciplinary Center for Scientific Computing, University of Heidelberg, Germany"],"affiliations":[{"raw_affiliation_string":"Interdisciplinary Center for Scientific Computing, University of Heidelberg, Germany","institution_ids":["https://openalex.org/I223822909"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5044044433"],"corresponding_institution_ids":["https://openalex.org/I223822909"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":2.736,"has_fulltext":false,"cited_by_count":34,"citation_normalized_percentile":{"value":0.90832259,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"27","issue":"7","first_page":"987","last_page":"993"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9897000193595886,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9894000291824341,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/pairwise-comparison","display_name":"Pairwise comparison","score":0.7310516238212585},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6107337474822998},{"id":"https://openalex.org/keywords/outlier","display_name":"Outlier","score":0.5720937252044678},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.4882526695728302},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.46557706594467163},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.4414108097553253},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.38904455304145813},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2071777582168579}],"concepts":[{"id":"https://openalex.org/C184898388","wikidata":"https://www.wikidata.org/wiki/Q1435712","display_name":"Pairwise comparison","level":2,"score":0.7310516238212585},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6107337474822998},{"id":"https://openalex.org/C79337645","wikidata":"https://www.wikidata.org/wiki/Q779824","display_name":"Outlier","level":2,"score":0.5720937252044678},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.4882526695728302},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.46557706594467163},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.4414108097553253},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.38904455304145813},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2071777582168579},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002853","descriptor_name":"Chromatography, Liquid","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002853","descriptor_name":"Chromatography, Liquid","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002853","descriptor_name":"Chromatography, Liquid","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btr051","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr051","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/7/987/16902314/btr051.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:21296750","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21296750","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btr051","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr051","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/7/987/16902314/btr051.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2102001700.pdf","grobid_xml":"https://content.openalex.org/works/W2102001700.grobid-xml"},"referenced_works_count":32,"referenced_works":["https://openalex.org/W1607252236","https://openalex.org/W1908438417","https://openalex.org/W1964010911","https://openalex.org/W1965149358","https://openalex.org/W1971606140","https://openalex.org/W1979853788","https://openalex.org/W1989299822","https://openalex.org/W1991777486","https://openalex.org/W2005794750","https://openalex.org/W2015930615","https://openalex.org/W2016572177","https://openalex.org/W2023096047","https://openalex.org/W2041106762","https://openalex.org/W2052388444","https://openalex.org/W2061575335","https://openalex.org/W2068115726","https://openalex.org/W2077682155","https://openalex.org/W2079497005","https://openalex.org/W2080752012","https://openalex.org/W2106017862","https://openalex.org/W2107231094","https://openalex.org/W2110962012","https://openalex.org/W2114754207","https://openalex.org/W2118868857","https://openalex.org/W2126297361","https://openalex.org/W2135817903","https://openalex.org/W2143947757","https://openalex.org/W2158447287","https://openalex.org/W2167813588","https://openalex.org/W2315531415","https://openalex.org/W3141890267","https://openalex.org/W6792169069"],"related_works":["https://openalex.org/W2487162673","https://openalex.org/W2942366970","https://openalex.org/W2793211469","https://openalex.org/W2949152769","https://openalex.org/W4372354731","https://openalex.org/W2562400057","https://openalex.org/W1692008701","https://openalex.org/W2597588799","https://openalex.org/W4360593462","https://openalex.org/W2194570607"],"abstract_inverted_index":{"A":[0],"C++":[1],"implementation":[2],"of":[3],"the":[4],"SIMA":[5],"algorithm":[6],"is":[7],"available":[8],"from":[9],"http://hci.iwr.uni-heidelberg.de/MIP/Software.":[10]},"counts_by_year":[{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":2},{"year":2019,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":4},{"year":2014,"cited_by_count":5},{"year":2013,"cited_by_count":7},{"year":2012,"cited_by_count":7}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
