{"id":"https://openalex.org/W2122735960","doi":"https://doi.org/10.1093/bioinformatics/btr050","title":"A Ruby API to query the Ensembl database for genomic features","display_name":"A Ruby API to query the Ensembl database for genomic features","publication_year":2011,"publication_date":"2011-01-28","ids":{"openalex":"https://openalex.org/W2122735960","doi":"https://doi.org/10.1093/bioinformatics/btr050","mag":"2122735960","pmid":"https://pubmed.ncbi.nlm.nih.gov/21278190"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btr050","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr050","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/7/1013/628743/btr050.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/27/7/1013/628743/btr050.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5054641536","display_name":"Francesco Strozzi","orcid":"https://orcid.org/0000-0002-6845-6982"},"institutions":[{"id":"https://openalex.org/I2799613648","display_name":"Parco Tecnologico Padano","ror":"https://ror.org/05bamms85","country_code":"IT","type":"archive","lineage":["https://openalex.org/I2799613648"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Francesco Strozzi","raw_affiliation_strings":["1 Parco Tecnologico Padano, Via Einstein Loc. Cascina Codazza 26900 Lodi, Italy and 2Faculty of Engineering - ESAT/SCD, Leuven University, Kasteelpark Arenberg 10 - bus 2446, 3001 Leuven, Belgium"],"affiliations":[{"raw_affiliation_string":"1 Parco Tecnologico Padano, Via Einstein Loc. Cascina Codazza 26900 Lodi, Italy and 2Faculty of Engineering - ESAT/SCD, Leuven University, Kasteelpark Arenberg 10 - bus 2446, 3001 Leuven, Belgium","institution_ids":["https://openalex.org/I2799613648"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5053646618","display_name":"Jan Aerts","orcid":"https://orcid.org/0000-0002-6416-2717"},"institutions":[{"id":"https://openalex.org/I2799613648","display_name":"Parco Tecnologico Padano","ror":"https://ror.org/05bamms85","country_code":"IT","type":"archive","lineage":["https://openalex.org/I2799613648"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Jan Aerts","raw_affiliation_strings":["1 Parco Tecnologico Padano, Via Einstein Loc. Cascina Codazza 26900 Lodi, Italy and 2Faculty of Engineering - ESAT/SCD, Leuven University, Kasteelpark Arenberg 10 - bus 2446, 3001 Leuven, Belgium"],"affiliations":[{"raw_affiliation_string":"1 Parco Tecnologico Padano, Via Einstein Loc. Cascina Codazza 26900 Lodi, Italy and 2Faculty of Engineering - ESAT/SCD, Leuven University, Kasteelpark Arenberg 10 - bus 2446, 3001 Leuven, Belgium","institution_ids":["https://openalex.org/I2799613648"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5054641536"],"corresponding_institution_ids":["https://openalex.org/I2799613648"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":4.4401,"has_fulltext":true,"cited_by_count":12,"citation_normalized_percentile":{"value":0.94632873,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"27","issue":"7","first_page":"1013","last_page":"1014"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9884999990463257,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9884999990463257,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9850000143051147,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9840999841690063,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/ensembl","display_name":"Ensembl","score":0.9143968224525452},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7463255524635315},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.4923340082168579},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.426182359457016},{"id":"https://openalex.org/keywords/database-query","display_name":"Database query","score":0.4116930663585663},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3843473792076111},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.19034746289253235},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.1882190704345703},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.13740673661231995},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.09598076343536377}],"concepts":[{"id":"https://openalex.org/C141674004","wikidata":"https://www.wikidata.org/wiki/Q1344256","display_name":"Ensembl","level":5,"score":0.9143968224525452},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7463255524635315},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.4923340082168579},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.426182359457016},{"id":"https://openalex.org/C2989070954","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database query","level":2,"score":0.4116930663585663},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3843473792076111},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.19034746289253235},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.1882190704345703},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.13740673661231995},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.09598076343536377},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btr050","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr050","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/7/1013/628743/btr050.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:21278190","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21278190","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:documentserver.uhasselt.be:1942/33734","is_oa":true,"landing_page_url":"http://www.scopus.com/inward/record.url?eid=2-s2.0-79953300932&partnerID=MN8TOARS","pdf_url":null,"source":{"id":"https://openalex.org/S4306401926","display_name":"Document Server@UHasselt (UHasselt)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I878454856","host_organization_name":"Hasselt University","host_organization_lineage":["https://openalex.org/I878454856"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:europepmc.org:2075340","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3065687","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btr050","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr050","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/7/1013/628743/btr050.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2122735960.pdf","grobid_xml":"https://content.openalex.org/works/W2122735960.grobid-xml"},"referenced_works_count":9,"referenced_works":["https://openalex.org/W1994547959","https://openalex.org/W2070102848","https://openalex.org/W2114850508","https://openalex.org/W2127640118","https://openalex.org/W2128567635","https://openalex.org/W2155592392","https://openalex.org/W4210450218","https://openalex.org/W6679229923","https://openalex.org/W6806875027"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2156564520","https://openalex.org/W4307843054","https://openalex.org/W2104570606","https://openalex.org/W4210430020","https://openalex.org/W4250611210","https://openalex.org/W2112118427","https://openalex.org/W4205247356","https://openalex.org/W2464717012","https://openalex.org/W2565027272"],"abstract_inverted_index":{"Most":[0],"functionality":[1],"of":[2],"the":[3,8,26,34],"API":[4,22],"is":[5,23],"provided":[6],"using":[7],"ActiveRecord":[9],"pattern.":[10],"The":[11,21],"library":[12],"depends":[13],"on":[14],"introspection":[15],"to":[16],"make":[17],"it":[18],"release":[19],"independent.":[20],"available":[24],"through":[25],"Rubygem":[27],"system":[28],"and":[29],"can":[30],"be":[31],"installed":[32],"with":[33],"command":[35],"gem":[36],"install":[37],"ruby-ensembl-api.":[38]},"counts_by_year":[{"year":2018,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":6}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
