{"id":"https://openalex.org/W2132670725","doi":"https://doi.org/10.1093/bioinformatics/btr036","title":"Computational inference of grammars for larger-than-gene structures from annotated gene sequences","display_name":"Computational inference of grammars for larger-than-gene structures from annotated gene sequences","publication_year":2011,"publication_date":"2011-01-22","ids":{"openalex":"https://openalex.org/W2132670725","doi":"https://doi.org/10.1093/bioinformatics/btr036","mag":"2132670725","pmid":"https://pubmed.ncbi.nlm.nih.gov/21258064"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btr036","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr036","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/6/791/48866374/bioinformatics_27_6_791.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/27/6/791/48866374/bioinformatics_27_6_791.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5057732779","display_name":"Guy Tsafnat","orcid":"https://orcid.org/0000-0003-4353-2026"},"institutions":[{"id":"https://openalex.org/I31746571","display_name":"UNSW Sydney","ror":"https://ror.org/03r8z3t63","country_code":"AU","type":"education","lineage":["https://openalex.org/I31746571"]},{"id":"https://openalex.org/I129604602","display_name":"University of Sydney","ror":"https://ror.org/0384j8v12","country_code":"AU","type":"education","lineage":["https://openalex.org/I129604602"]}],"countries":["AU"],"is_corresponding":true,"raw_author_name":"Guy Tsafnat","raw_affiliation_strings":["1 Centre for Health Informatics, Australian Institute of Health Innovation, University of New South Wales and 2Centre for Infectious Diseases and Microbiology, University of Sydney, Sydney, Australia"],"affiliations":[{"raw_affiliation_string":"1 Centre for Health Informatics, Australian Institute of Health Innovation, University of New South Wales and 2Centre for Infectious Diseases and Microbiology, University of Sydney, Sydney, Australia","institution_ids":["https://openalex.org/I31746571","https://openalex.org/I129604602"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039027633","display_name":"Jaron Schaeffer","orcid":null},"institutions":[{"id":"https://openalex.org/I31746571","display_name":"UNSW Sydney","ror":"https://ror.org/03r8z3t63","country_code":"AU","type":"education","lineage":["https://openalex.org/I31746571"]},{"id":"https://openalex.org/I129604602","display_name":"University of Sydney","ror":"https://ror.org/0384j8v12","country_code":"AU","type":"education","lineage":["https://openalex.org/I129604602"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Jaron Schaeffer","raw_affiliation_strings":["1 Centre for Health Informatics, Australian Institute of Health Innovation, University of New South Wales and 2Centre for Infectious Diseases and Microbiology, University of Sydney, Sydney, Australia"],"affiliations":[{"raw_affiliation_string":"1 Centre for Health Informatics, Australian Institute of Health Innovation, University of New South Wales and 2Centre for Infectious Diseases and Microbiology, University of Sydney, Sydney, Australia","institution_ids":["https://openalex.org/I31746571","https://openalex.org/I129604602"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039800147","display_name":"Andrew Clayphan","orcid":null},"institutions":[{"id":"https://openalex.org/I31746571","display_name":"UNSW Sydney","ror":"https://ror.org/03r8z3t63","country_code":"AU","type":"education","lineage":["https://openalex.org/I31746571"]},{"id":"https://openalex.org/I129604602","display_name":"University of Sydney","ror":"https://ror.org/0384j8v12","country_code":"AU","type":"education","lineage":["https://openalex.org/I129604602"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Andrew Clayphan","raw_affiliation_strings":["1 Centre for Health Informatics, Australian Institute of Health Innovation, University of New South Wales and 2Centre for Infectious Diseases and Microbiology, University of Sydney, Sydney, Australia"],"affiliations":[{"raw_affiliation_string":"1 Centre for Health Informatics, Australian Institute of Health Innovation, University of New South Wales and 2Centre for Infectious Diseases and Microbiology, University of Sydney, Sydney, Australia","institution_ids":["https://openalex.org/I31746571","https://openalex.org/I129604602"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052262069","display_name":"Jonathan R. Iredell","orcid":"https://orcid.org/0000-0003-2469-7060"},"institutions":[{"id":"https://openalex.org/I31746571","display_name":"UNSW Sydney","ror":"https://ror.org/03r8z3t63","country_code":"AU","type":"education","lineage":["https://openalex.org/I31746571"]},{"id":"https://openalex.org/I129604602","display_name":"University of Sydney","ror":"https://ror.org/0384j8v12","country_code":"AU","type":"education","lineage":["https://openalex.org/I129604602"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Jon R. Iredell","raw_affiliation_strings":["1 Centre for Health Informatics, Australian Institute of Health Innovation, University of New South Wales and 2Centre for Infectious Diseases and Microbiology, University of Sydney, Sydney, Australia"],"affiliations":[{"raw_affiliation_string":"1 Centre for Health Informatics, Australian Institute of Health Innovation, University of New South Wales and 2Centre for Infectious Diseases and Microbiology, University of Sydney, Sydney, Australia","institution_ids":["https://openalex.org/I31746571","https://openalex.org/I129604602"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080471486","display_name":"Sally R. Partridge","orcid":"https://orcid.org/0000-0002-0666-8330"},"institutions":[{"id":"https://openalex.org/I31746571","display_name":"UNSW Sydney","ror":"https://ror.org/03r8z3t63","country_code":"AU","type":"education","lineage":["https://openalex.org/I31746571"]},{"id":"https://openalex.org/I129604602","display_name":"University of Sydney","ror":"https://ror.org/0384j8v12","country_code":"AU","type":"education","lineage":["https://openalex.org/I129604602"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Sally R. Partridge","raw_affiliation_strings":["1 Centre for Health Informatics, Australian Institute of Health Innovation, University of New South Wales and 2Centre for Infectious Diseases and Microbiology, University of Sydney, Sydney, Australia"],"affiliations":[{"raw_affiliation_string":"1 Centre for Health Informatics, Australian Institute of Health Innovation, University of New South Wales and 2Centre for Infectious Diseases and Microbiology, University of Sydney, Sydney, Australia","institution_ids":["https://openalex.org/I31746571","https://openalex.org/I129604602"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5088581420","display_name":"Enrico Coiera","orcid":"https://orcid.org/0000-0002-6444-6584"},"institutions":[{"id":"https://openalex.org/I129604602","display_name":"University of Sydney","ror":"https://ror.org/0384j8v12","country_code":"AU","type":"education","lineage":["https://openalex.org/I129604602"]},{"id":"https://openalex.org/I31746571","display_name":"UNSW Sydney","ror":"https://ror.org/03r8z3t63","country_code":"AU","type":"education","lineage":["https://openalex.org/I31746571"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Enrico Coiera","raw_affiliation_strings":["1 Centre for Health Informatics, Australian Institute of Health Innovation, University of New South Wales and 2Centre for Infectious Diseases and Microbiology, University of Sydney, Sydney, Australia"],"affiliations":[{"raw_affiliation_string":"1 Centre for Health Informatics, Australian Institute of Health Innovation, University of New South Wales and 2Centre for Infectious Diseases and Microbiology, University of Sydney, Sydney, Australia","institution_ids":["https://openalex.org/I31746571","https://openalex.org/I129604602"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5057732779"],"corresponding_institution_ids":["https://openalex.org/I129604602","https://openalex.org/I31746571"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.4002,"has_fulltext":true,"cited_by_count":7,"citation_normalized_percentile":{"value":0.63439268,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"27","issue":"6","first_page":"791","last_page":"796"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.9940999746322632,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/rule-based-machine-translation","display_name":"Rule-based machine translation","score":0.6022722125053406},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.5652652382850647},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5360617637634277},{"id":"https://openalex.org/keywords/genbank","display_name":"GenBank","score":0.5036103129386902},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.49030688405036926},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.4876629114151001},{"id":"https://openalex.org/keywords/gene-prediction","display_name":"Gene prediction","score":0.44345661997795105},{"id":"https://openalex.org/keywords/gene-family","display_name":"Gene family","score":0.4263990521430969},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.39086177945137024},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.33507034182548523},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.32427993416786194},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.18833884596824646}],"concepts":[{"id":"https://openalex.org/C53893814","wikidata":"https://www.wikidata.org/wiki/Q7378909","display_name":"Rule-based machine translation","level":2,"score":0.6022722125053406},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5652652382850647},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5360617637634277},{"id":"https://openalex.org/C79029880","wikidata":"https://www.wikidata.org/wiki/Q901755","display_name":"GenBank","level":3,"score":0.5036103129386902},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.49030688405036926},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4876629114151001},{"id":"https://openalex.org/C105565629","wikidata":"https://www.wikidata.org/wiki/Q1248292","display_name":"Gene prediction","level":4,"score":0.44345661997795105},{"id":"https://openalex.org/C5911399","wikidata":"https://www.wikidata.org/wiki/Q2278983","display_name":"Gene family","level":4,"score":0.4263990521430969},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.39086177945137024},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.33507034182548523},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.32427993416786194},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.18833884596824646}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001330","descriptor_name":"Electronic Data Processing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D001330","descriptor_name":"Electronic Data Processing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D001330","descriptor_name":"Electronic Data Processing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D008390","descriptor_name":"Markov Chains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008390","descriptor_name":"Markov Chains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008390","descriptor_name":"Markov Chains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btr036","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr036","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/6/791/48866374/bioinformatics_27_6_791.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:21258064","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21258064","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btr036","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr036","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/6/791/48866374/bioinformatics_27_6_791.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4000000059604645,"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4"}],"awards":[{"id":"https://openalex.org/G5474774966","display_name":null,"funder_award_id":"Health","funder_id":"https://openalex.org/F4320325396","funder_display_name":"NSW Ministry of Health"}],"funders":[{"id":"https://openalex.org/F4320325396","display_name":"NSW Ministry of Health","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2132670725.pdf","grobid_xml":"https://content.openalex.org/works/W2132670725.grobid-xml"},"referenced_works_count":25,"referenced_works":["https://openalex.org/W52943171","https://openalex.org/W1486103693","https://openalex.org/W1964752634","https://openalex.org/W1989348205","https://openalex.org/W1991133427","https://openalex.org/W1991330646","https://openalex.org/W1991990280","https://openalex.org/W1994241529","https://openalex.org/W2026967058","https://openalex.org/W2032619610","https://openalex.org/W2093205346","https://openalex.org/W2105199251","https://openalex.org/W2113828015","https://openalex.org/W2115590956","https://openalex.org/W2118701853","https://openalex.org/W2138531167","https://openalex.org/W2139636599","https://openalex.org/W2145063082","https://openalex.org/W2146521959","https://openalex.org/W2149452073","https://openalex.org/W2156103113","https://openalex.org/W2162825747","https://openalex.org/W2166480651","https://openalex.org/W2914037595","https://openalex.org/W4229781645"],"related_works":["https://openalex.org/W1565897669","https://openalex.org/W2013108791","https://openalex.org/W2007559212","https://openalex.org/W2122540340","https://openalex.org/W2378868006","https://openalex.org/W2334012009","https://openalex.org/W1968526004","https://openalex.org/W2004096242","https://openalex.org/W2000946737","https://openalex.org/W2189446075"],"abstract_inverted_index":{"http://www2.chi.unsw.edu.au/attacca.":[0]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2013,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
