{"id":"https://openalex.org/W2163244155","doi":"https://doi.org/10.1093/bioinformatics/btr033","title":"Graphics processing unit implementations of relative expression analysis algorithms enable dramatic computational speedup","display_name":"Graphics processing unit implementations of relative expression analysis algorithms enable dramatic computational speedup","publication_year":2011,"publication_date":"2011-01-20","ids":{"openalex":"https://openalex.org/W2163244155","doi":"https://doi.org/10.1093/bioinformatics/btr033","mag":"2163244155","pmid":"https://pubmed.ncbi.nlm.nih.gov/21257608"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btr033","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr033","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/6/872/48863100/bioinformatics_27_6_872.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/27/6/872/48863100/bioinformatics_27_6_872.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5035252203","display_name":"Andrew T. Magis","orcid":"https://orcid.org/0000-0003-0576-677X"},"institutions":[{"id":"https://openalex.org/I157725225","display_name":"University of Illinois Urbana-Champaign","ror":"https://ror.org/047426m28","country_code":"US","type":"education","lineage":["https://openalex.org/I157725225"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Andrew T. Magis","raw_affiliation_strings":["1 Center for Biophysics and Computational Biology, 2Department of Computer Science, 3Department of Bioengineering and 4Department of Chemical and Biomolecular Engineering, University of Illinois, Urbana, IL 61801, USA"],"affiliations":[{"raw_affiliation_string":"1 Center for Biophysics and Computational Biology, 2Department of Computer Science, 3Department of Bioengineering and 4Department of Chemical and Biomolecular Engineering, University of Illinois, Urbana, IL 61801, USA","institution_ids":["https://openalex.org/I157725225"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071514791","display_name":"John C. Earls","orcid":"https://orcid.org/0000-0002-8239-911X"},"institutions":[{"id":"https://openalex.org/I157725225","display_name":"University of Illinois Urbana-Champaign","ror":"https://ror.org/047426m28","country_code":"US","type":"education","lineage":["https://openalex.org/I157725225"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"John C. Earls","raw_affiliation_strings":["1 Center for Biophysics and Computational Biology, 2Department of Computer Science, 3Department of Bioengineering and 4Department of Chemical and Biomolecular Engineering, University of Illinois, Urbana, IL 61801, USA"],"affiliations":[{"raw_affiliation_string":"1 Center for Biophysics and Computational Biology, 2Department of Computer Science, 3Department of Bioengineering and 4Department of Chemical and Biomolecular Engineering, University of Illinois, Urbana, IL 61801, USA","institution_ids":["https://openalex.org/I157725225"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110511389","display_name":"Younhee Ko","orcid":"https://orcid.org/0000-0002-2843-2222"},"institutions":[{"id":"https://openalex.org/I157725225","display_name":"University of Illinois Urbana-Champaign","ror":"https://ror.org/047426m28","country_code":"US","type":"education","lineage":["https://openalex.org/I157725225"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Youn-Hee Ko","raw_affiliation_strings":["1 Center for Biophysics and Computational Biology, 2Department of Computer Science, 3Department of Bioengineering and 4Department of Chemical and Biomolecular Engineering, University of Illinois, Urbana, IL 61801, USA"],"affiliations":[{"raw_affiliation_string":"1 Center for Biophysics and Computational Biology, 2Department of Computer Science, 3Department of Bioengineering and 4Department of Chemical and Biomolecular Engineering, University of Illinois, Urbana, IL 61801, USA","institution_ids":["https://openalex.org/I157725225"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058971932","display_name":"James A. Eddy","orcid":"https://orcid.org/0000-0001-9758-0176"},"institutions":[{"id":"https://openalex.org/I157725225","display_name":"University of Illinois Urbana-Champaign","ror":"https://ror.org/047426m28","country_code":"US","type":"education","lineage":["https://openalex.org/I157725225"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"James A. Eddy","raw_affiliation_strings":["1 Center for Biophysics and Computational Biology, 2Department of Computer Science, 3Department of Bioengineering and 4Department of Chemical and Biomolecular Engineering, University of Illinois, Urbana, IL 61801, USA"],"affiliations":[{"raw_affiliation_string":"1 Center for Biophysics and Computational Biology, 2Department of Computer Science, 3Department of Bioengineering and 4Department of Chemical and Biomolecular Engineering, University of Illinois, Urbana, IL 61801, USA","institution_ids":["https://openalex.org/I157725225"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5034589050","display_name":"Nathan D. Price","orcid":"https://orcid.org/0000-0002-4157-0267"},"institutions":[{"id":"https://openalex.org/I157725225","display_name":"University of Illinois Urbana-Champaign","ror":"https://ror.org/047426m28","country_code":"US","type":"education","lineage":["https://openalex.org/I157725225"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nathan D. Price","raw_affiliation_strings":["1 Center for Biophysics and Computational Biology, 2Department of Computer Science, 3Department of Bioengineering and 4Department of Chemical and Biomolecular Engineering, University of Illinois, Urbana, IL 61801, USA"],"affiliations":[{"raw_affiliation_string":"1 Center for Biophysics and Computational Biology, 2Department of Computer Science, 3Department of Bioengineering and 4Department of Chemical and Biomolecular Engineering, University of Illinois, Urbana, IL 61801, USA","institution_ids":["https://openalex.org/I157725225"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5035252203"],"corresponding_institution_ids":["https://openalex.org/I157725225"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.912,"has_fulltext":true,"cited_by_count":12,"citation_normalized_percentile":{"value":0.73995819,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"27","issue":"6","first_page":"872","last_page":"873"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9837999939918518,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10320","display_name":"Neural Networks and Applications","score":0.968500018119812,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/speedup","display_name":"Speedup","score":0.9031815528869629},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.78497314453125},{"id":"https://openalex.org/keywords/implementation","display_name":"Implementation","score":0.719658613204956},{"id":"https://openalex.org/keywords/graphics-processing-unit","display_name":"Graphics processing unit","score":0.7114269733428955},{"id":"https://openalex.org/keywords/graphics","display_name":"Graphics","score":0.5915759801864624},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.5483272671699524},{"id":"https://openalex.org/keywords/cuda","display_name":"CUDA","score":0.48816996812820435},{"id":"https://openalex.org/keywords/computer-graphics","display_name":"Computer graphics","score":0.4837808310985565},{"id":"https://openalex.org/keywords/expression","display_name":"Expression (computer science)","score":0.4699157774448395},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.448127418756485},{"id":"https://openalex.org/keywords/general-purpose-computing-on-graphics-processing-units","display_name":"General-purpose computing on graphics processing units","score":0.42800435423851013},{"id":"https://openalex.org/keywords/computational-science","display_name":"Computational science","score":0.32347047328948975},{"id":"https://openalex.org/keywords/computer-graphics","display_name":"Computer graphics (images)","score":0.28392696380615234},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.19931957125663757}],"concepts":[{"id":"https://openalex.org/C68339613","wikidata":"https://www.wikidata.org/wiki/Q1549489","display_name":"Speedup","level":2,"score":0.9031815528869629},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.78497314453125},{"id":"https://openalex.org/C26713055","wikidata":"https://www.wikidata.org/wiki/Q245962","display_name":"Implementation","level":2,"score":0.719658613204956},{"id":"https://openalex.org/C2779851693","wikidata":"https://www.wikidata.org/wiki/Q183484","display_name":"Graphics processing unit","level":2,"score":0.7114269733428955},{"id":"https://openalex.org/C21442007","wikidata":"https://www.wikidata.org/wiki/Q1027879","display_name":"Graphics","level":2,"score":0.5915759801864624},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.5483272671699524},{"id":"https://openalex.org/C2778119891","wikidata":"https://www.wikidata.org/wiki/Q477690","display_name":"CUDA","level":2,"score":0.48816996812820435},{"id":"https://openalex.org/C77660652","wikidata":"https://www.wikidata.org/wiki/Q150971","display_name":"Computer graphics","level":2,"score":0.4837808310985565},{"id":"https://openalex.org/C90559484","wikidata":"https://www.wikidata.org/wiki/Q778379","display_name":"Expression (computer science)","level":2,"score":0.4699157774448395},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.448127418756485},{"id":"https://openalex.org/C50630238","wikidata":"https://www.wikidata.org/wiki/Q971505","display_name":"General-purpose computing on graphics processing units","level":3,"score":0.42800435423851013},{"id":"https://openalex.org/C459310","wikidata":"https://www.wikidata.org/wiki/Q117801","display_name":"Computational science","level":1,"score":0.32347047328948975},{"id":"https://openalex.org/C121684516","wikidata":"https://www.wikidata.org/wiki/Q7600677","display_name":"Computer graphics (images)","level":1,"score":0.28392696380615234},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.19931957125663757}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btr033","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr033","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/6/872/48863100/bioinformatics_27_6_872.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:21257608","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21257608","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:3051334","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3051334","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btr033","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr033","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/6/872/48863100/bioinformatics_27_6_872.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320306274","display_name":"Roy J. Carver Charitable Trust","ror":"https://ror.org/01ah2ch91"},{"id":"https://openalex.org/F4320312143","display_name":"National Centre for Supercomputing Applications","ror":"https://ror.org/03r10zj06"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2163244155.pdf","grobid_xml":"https://content.openalex.org/works/W2163244155.grobid-xml"},"referenced_works_count":14,"referenced_works":["https://openalex.org/W1727290854","https://openalex.org/W1998484176","https://openalex.org/W2002666062","https://openalex.org/W2007615926","https://openalex.org/W2020634604","https://openalex.org/W2031100365","https://openalex.org/W2036343507","https://openalex.org/W2065963893","https://openalex.org/W2102794349","https://openalex.org/W2105776281","https://openalex.org/W2137920719","https://openalex.org/W2139319528","https://openalex.org/W2150459098","https://openalex.org/W2171528238"],"related_works":["https://openalex.org/W2983282793","https://openalex.org/W1963859303","https://openalex.org/W2364044215","https://openalex.org/W2389600408","https://openalex.org/W240129890","https://openalex.org/W3048701459","https://openalex.org/W2149078538","https://openalex.org/W2080146221","https://openalex.org/W2153506571","https://openalex.org/W3104348697"],"abstract_inverted_index":{"http://www.igb.illinois.edu/labs/price/downloads/.":[0]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2016,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":4},{"year":2012,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
