{"id":"https://openalex.org/W2146436369","doi":"https://doi.org/10.1093/bioinformatics/btr005","title":"Length bias correction for RNA-seq data in gene set analyses","display_name":"Length bias correction for RNA-seq data in gene set analyses","publication_year":2011,"publication_date":"2011-01-19","ids":{"openalex":"https://openalex.org/W2146436369","doi":"https://doi.org/10.1093/bioinformatics/btr005","mag":"2146436369","pmid":"https://pubmed.ncbi.nlm.nih.gov/21252076"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btr005","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr005","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/5/662/48866617/bioinformatics_27_5_662.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/27/5/662/48866617/bioinformatics_27_5_662.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5109586068","display_name":"Liyan Gao","orcid":null},"institutions":[{"id":"https://openalex.org/I32389192","display_name":"University of Alabama at Birmingham","ror":"https://ror.org/008s83205","country_code":"US","type":"education","lineage":["https://openalex.org/I32389192"]},{"id":"https://openalex.org/I75420490","display_name":"Louisiana State University Health Sciences Center New Orleans","ror":"https://ror.org/01qv8fp92","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I75420490"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Liyan Gao","raw_affiliation_strings":["1 Department of Biostatistics, University of Alabama at Birmingham, Birmingham, AL 35294 and 2Biostatistics Program, School of Public Health, Louisiana State University Health Sciences Center, New Orleans, LA 70112, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Biostatistics, University of Alabama at Birmingham, Birmingham, AL 35294 and 2Biostatistics Program, School of Public Health, Louisiana State University Health Sciences Center, New Orleans, LA 70112, USA","institution_ids":["https://openalex.org/I75420490","https://openalex.org/I32389192"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012183676","display_name":"Zhide Fang","orcid":"https://orcid.org/0000-0002-0344-3371"},"institutions":[{"id":"https://openalex.org/I32389192","display_name":"University of Alabama at Birmingham","ror":"https://ror.org/008s83205","country_code":"US","type":"education","lineage":["https://openalex.org/I32389192"]},{"id":"https://openalex.org/I75420490","display_name":"Louisiana State University Health Sciences Center New Orleans","ror":"https://ror.org/01qv8fp92","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I75420490"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zhide Fang","raw_affiliation_strings":["1 Department of Biostatistics, University of Alabama at Birmingham, Birmingham, AL 35294 and 2Biostatistics Program, School of Public Health, Louisiana State University Health Sciences Center, New Orleans, LA 70112, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Biostatistics, University of Alabama at Birmingham, Birmingham, AL 35294 and 2Biostatistics Program, School of Public Health, Louisiana State University Health Sciences Center, New Orleans, LA 70112, USA","institution_ids":["https://openalex.org/I75420490","https://openalex.org/I32389192"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100435154","display_name":"Kui Zhang","orcid":"https://orcid.org/0000-0001-9618-610X"},"institutions":[{"id":"https://openalex.org/I32389192","display_name":"University of Alabama at Birmingham","ror":"https://ror.org/008s83205","country_code":"US","type":"education","lineage":["https://openalex.org/I32389192"]},{"id":"https://openalex.org/I75420490","display_name":"Louisiana State University Health Sciences Center New Orleans","ror":"https://ror.org/01qv8fp92","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I75420490"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kui Zhang","raw_affiliation_strings":["1 Department of Biostatistics, University of Alabama at Birmingham, Birmingham, AL 35294 and 2Biostatistics Program, School of Public Health, Louisiana State University Health Sciences Center, New Orleans, LA 70112, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Biostatistics, University of Alabama at Birmingham, Birmingham, AL 35294 and 2Biostatistics Program, School of Public Health, Louisiana State University Health Sciences Center, New Orleans, LA 70112, USA","institution_ids":["https://openalex.org/I75420490","https://openalex.org/I32389192"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012354604","display_name":"Degui Zhi","orcid":"https://orcid.org/0000-0001-7754-1890"},"institutions":[{"id":"https://openalex.org/I32389192","display_name":"University of Alabama at Birmingham","ror":"https://ror.org/008s83205","country_code":"US","type":"education","lineage":["https://openalex.org/I32389192"]},{"id":"https://openalex.org/I75420490","display_name":"Louisiana State University Health Sciences Center New Orleans","ror":"https://ror.org/01qv8fp92","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I75420490"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Degui Zhi","raw_affiliation_strings":["1 Department of Biostatistics, University of Alabama at Birmingham, Birmingham, AL 35294 and 2Biostatistics Program, School of Public Health, Louisiana State University Health Sciences Center, New Orleans, LA 70112, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Biostatistics, University of Alabama at Birmingham, Birmingham, AL 35294 and 2Biostatistics Program, School of Public Health, Louisiana State University Health Sciences Center, New Orleans, LA 70112, USA","institution_ids":["https://openalex.org/I75420490","https://openalex.org/I32389192"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5029597544","display_name":"Xiangqin Cui","orcid":"https://orcid.org/0000-0003-0621-9313"},"institutions":[{"id":"https://openalex.org/I32389192","display_name":"University of Alabama at Birmingham","ror":"https://ror.org/008s83205","country_code":"US","type":"education","lineage":["https://openalex.org/I32389192"]},{"id":"https://openalex.org/I75420490","display_name":"Louisiana State University Health Sciences Center New Orleans","ror":"https://ror.org/01qv8fp92","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I75420490"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Xiangqin Cui","raw_affiliation_strings":["1 Department of Biostatistics, University of Alabama at Birmingham, Birmingham, AL 35294 and 2Biostatistics Program, School of Public Health, Louisiana State University Health Sciences Center, New Orleans, LA 70112, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Biostatistics, University of Alabama at Birmingham, Birmingham, AL 35294 and 2Biostatistics Program, School of Public Health, Louisiana State University Health Sciences Center, New Orleans, LA 70112, USA","institution_ids":["https://openalex.org/I75420490","https://openalex.org/I32389192"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5029597544"],"corresponding_institution_ids":["https://openalex.org/I32389192","https://openalex.org/I75420490"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":2.9275,"has_fulltext":false,"cited_by_count":53,"citation_normalized_percentile":{"value":0.9166075,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"27","issue":"5","first_page":"662","last_page":"669"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.5105999708175659,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.5105999708175659,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.2759000062942505,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.052299998700618744,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5128893852233887},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.48165810108184814},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.47980549931526184},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.4346480667591095},{"id":"https://openalex.org/keywords/data-set","display_name":"Data set","score":0.41829240322113037},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.40195325016975403},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3333680033683777},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3290688693523407},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.3243585228919983}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5128893852233887},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.48165810108184814},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.47980549931526184},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.4346480667591095},{"id":"https://openalex.org/C58489278","wikidata":"https://www.wikidata.org/wiki/Q1172284","display_name":"Data set","level":2,"score":0.41829240322113037},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.40195325016975403},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3333680033683777},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3290688693523407},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.3243585228919983}],"mesh":[{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D015982","descriptor_name":"Bias","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015982","descriptor_name":"Bias","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015982","descriptor_name":"Bias","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btr005","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr005","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/5/662/48866617/bioinformatics_27_5_662.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:21252076","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21252076","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:europepmc.org:2297184","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3042188","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btr005","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btr005","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/5/662/48866617/bioinformatics_27_5_662.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G185261589","display_name":null,"funder_award_id":"P30 DK07022","funder_id":"https://openalex.org/F4320337357","funder_display_name":"National Institute of Diabetes and Digestive and Kidney Diseases"},{"id":"https://openalex.org/G4077954923","display_name":null,"funder_award_id":"UL1 RR025777","funder_id":"https://openalex.org/F4320337375","funder_display_name":"National Center for Research Resources"},{"id":"https://openalex.org/G5683250970","display_name":null,"funder_award_id":"RR024163","funder_id":"https://openalex.org/F4320337375","funder_display_name":"National Center for Research Resources"},{"id":"https://openalex.org/G5788819386","display_name":null,"funder_award_id":"R01-GM-74913","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G6425744325","display_name":null,"funder_award_id":"T32 DK007022","funder_id":"https://openalex.org/F4320337357","funder_display_name":"National Institute of Diabetes and Digestive and Kidney Diseases"},{"id":"https://openalex.org/G6572096077","display_name":null,"funder_award_id":"R00 RR024163","funder_id":"https://openalex.org/F4320337375","funder_display_name":"National Center for Research Resources"},{"id":"https://openalex.org/G7086007482","display_name":null,"funder_award_id":"K99 RR024163","funder_id":"https://openalex.org/F4320337375","funder_display_name":"National Center for Research Resources"},{"id":"https://openalex.org/G7129857026","display_name":null,"funder_award_id":"1UL1RR025777-03","funder_id":"https://openalex.org/F4320337375","funder_display_name":"National Center for Research Resources"},{"id":"https://openalex.org/G8786258931","display_name":null,"funder_award_id":"R01 GM074913","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"},{"id":"https://openalex.org/F4320337357","display_name":"National Institute of Diabetes and Digestive and Kidney Diseases","ror":"https://ror.org/00adh9b73"},{"id":"https://openalex.org/F4320337375","display_name":"National Center for Research Resources","ror":"https://ror.org/04pw6fb54"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2146436369.pdf"},"referenced_works_count":21,"referenced_works":["https://openalex.org/W1968005447","https://openalex.org/W1981509058","https://openalex.org/W1993009001","https://openalex.org/W2004419591","https://openalex.org/W2021129827","https://openalex.org/W2037768790","https://openalex.org/W2081098333","https://openalex.org/W2100448568","https://openalex.org/W2105776281","https://openalex.org/W2107060225","https://openalex.org/W2110065044","https://openalex.org/W2114504176","https://openalex.org/W2117904145","https://openalex.org/W2120865735","https://openalex.org/W2121211805","https://openalex.org/W2141425631","https://openalex.org/W2145416275","https://openalex.org/W2152239989","https://openalex.org/W2154431984","https://openalex.org/W2156631105","https://openalex.org/W2170989872"],"related_works":["https://openalex.org/W1922851888","https://openalex.org/W2406961220","https://openalex.org/W2131250617","https://openalex.org/W4233034052","https://openalex.org/W2371030422","https://openalex.org/W2046260256","https://openalex.org/W4232468313","https://openalex.org/W2057907336","https://openalex.org/W4242249046","https://openalex.org/W2034625591"],"abstract_inverted_index":{"MOTIVATION:":[0],"Next-generation":[1],"sequencing":[2],"technologies":[3],"are":[4,63,221],"being":[5],"rapidly":[6],"applied":[7],"to":[8,14,31,78,91],"quantifying":[9],"transcripts":[10,27,38],"(RNA-seq).":[11],"However,":[12],"due":[13],"the":[15,19,22,40,47,54,66,132,145,156,160,166,173,199,208,215],"unique":[16],"properties":[17],"of":[18,25,36,135,169,176],"RNA-seq":[20],"data,":[21],"differential":[23],"expression":[24],"longer":[26],"is":[28,88],"more":[29,212],"likely":[30],"be":[32,79],"identified":[33,80],"than":[34],"that":[35,68,193],"shorter":[37],"with":[39,70,214],"same":[41,71],"effect":[42,72],"size.":[43],"This":[44],"bias":[45],"complicates":[46],"downstream":[48],"gene":[49,92,123,142,151,171],"set":[50,143,152],"analysis":[51],"(GSA)":[52],"because":[53],"methods":[55,195],"for":[56,60,95,111,114,141,159],"GSA":[57,100],"previously":[58],"developed":[59],"microarray":[61,216],"data":[62],"based":[64,116],"on":[65,117],"assumption":[67],"genes":[69],"size":[73],"have":[74],"equal":[75],"probability":[76,168],"(power)":[77],"as":[81],"significantly":[82],"differentially":[83],"expressed.":[84],"Since":[85],"transcript":[86,136,178],"length":[87,97,137],"not":[89],"related":[90],"expression,":[93],"adjusting":[94],"such":[96],"dependency":[98],"in":[99],"becomes":[101],"necessary.":[102],"RESULTS:":[103],"In":[104],"this":[105],"article,":[106],"we":[107,125,154],"proposed":[108,209],"two":[109,183],"approaches":[110,184],"transcript-length":[112,200],"adjustment":[113],"analyses":[115],"Poisson":[118],"models:":[119],"(i)":[120],"At":[121,150],"individual":[122],"level,":[124,153],"adjusted":[126,155],"each":[127,170],"gene's":[128],"test":[129,163],"statistic":[130],"using":[131,144,172,185],"square":[133,174],"root":[134,175],"followed":[138],"by":[139,164],"testing":[140],"Wilcoxon":[146],"rank-sum":[147],"test.":[148],"(ii)":[149],"null":[157],"distribution":[158],"Fisher's":[161],"exact":[162],"weighting":[165],"identification":[167],"its":[177],"length.":[179],"We":[180],"evaluated":[181],"these":[182,194],"simulations":[186],"and":[187,191],"a":[188],"real":[189],"dataset,":[190],"showed":[192],"can":[196],"effectively":[197],"reduce":[198],"biases.":[201],"The":[202],"top-ranked":[203],"GO":[204],"terms":[205],"obtained":[206],"from":[207],"adjustments":[210],"show":[211],"overlaps":[213],"results.":[217],"AVAILABILITY:":[218],"R":[219],"scripts":[220],"at":[222],"http://www.soph.uab.edu/Statgenetics/People/XCui/r-codes/.":[223]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":6},{"year":2017,"cited_by_count":6},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":4},{"year":2014,"cited_by_count":10},{"year":2013,"cited_by_count":8},{"year":2012,"cited_by_count":2}],"updated_date":"2026-06-24T13:16:06.693445","created_date":"2025-10-10T00:00:00"}
