{"id":"https://openalex.org/W1990728924","doi":"https://doi.org/10.1093/bioinformatics/btq722","title":"Identifying viral integration sites using SeqMap 2.0","display_name":"Identifying viral integration sites using SeqMap 2.0","publication_year":2011,"publication_date":"2011-01-17","ids":{"openalex":"https://openalex.org/W1990728924","doi":"https://doi.org/10.1093/bioinformatics/btq722","mag":"1990728924","pmid":"https://pubmed.ncbi.nlm.nih.gov/21245052"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btq722","doi":"https://doi.org/10.1093/bioinformatics/btq722","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq722","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/5/720/48866311/bioinformatics_27_5_720.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"listed_in":["abdc-a","anvur-class-a","anvur-scientific","ccf-a","cwts-core","doaj","dongbi-b","doyens","jufo-3","ki-jl-2","medline","norway-2","poland-200","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"volume":null,"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/27/5/720/48866311/bioinformatics_27_5_720.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5041739082","display_name":"Troy Hawkins","orcid":"https://orcid.org/0000-0002-6982-5014","observed_orcids":["https://orcid.org/0000-0002-6982-5014"]},"institutions":[{"id":"https://openalex.org/I1337826666","display_name":"Buck Institute for Research on Aging","ror":"https://ror.org/050sv4x28","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1337826666"]},{"id":"https://openalex.org/I4210119109","display_name":"Indiana University Bloomington","ror":"https://ror.org/02k40bc56","country_code":"US","type":"education","lineage":["https://openalex.org/I4210119109","https://openalex.org/I592451"]},{"id":"https://openalex.org/I4388446366","display_name":"Indiana University Indianapolis","ror":"https://ror.org/03eftgw80","country_code":"US","type":"education","lineage":["https://openalex.org/I4388446366","https://openalex.org/I592451"]},{"id":"https://openalex.org/I4394709130","display_name":"Indiana University School of Medicine","ror":"https://ror.org/02ets8c94","country_code":null,"type":"education","lineage":["https://openalex.org/I4394709130","https://openalex.org/I592451"]},{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Troy B. Hawkins","raw_affiliation_strings":["1 Department of Medical and Molecular Genetics, 2Center for Computational Biology and Bioinformatics, 3Department of Pediatrics, Herman B Wells Center for Pediatric Research, Indiana University School of Medicine, Indianapolis, IN 46202, 4Center for Genomics and Bioinformatics, Indiana University, Bloomington, IN 47405 and 5The Buck Institute for Age Research, Novato, CA 94945, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Medical and Molecular Genetics, 2Center for Computational Biology and Bioinformatics, 3Department of Pediatrics, Herman B Wells Center for Pediatric Research, Indiana University School of Medicine, Indianapolis, IN 46202, 4Center for Genomics and Bioinformatics, Indiana University, Bloomington, IN 47405 and 5The Buck Institute for Age Research, Novato, CA 94945, USA","institution_ids":["https://openalex.org/I1337826666","https://openalex.org/I4210119109","https://openalex.org/I4388446366","https://openalex.org/I4394709130","https://openalex.org/I55769427"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041065211","display_name":"Jessica Dantzer","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I1337826666","display_name":"Buck Institute for Research on Aging","ror":"https://ror.org/050sv4x28","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1337826666"]},{"id":"https://openalex.org/I4210119109","display_name":"Indiana University Bloomington","ror":"https://ror.org/02k40bc56","country_code":"US","type":"education","lineage":["https://openalex.org/I4210119109","https://openalex.org/I592451"]},{"id":"https://openalex.org/I4388446366","display_name":"Indiana University Indianapolis","ror":"https://ror.org/03eftgw80","country_code":"US","type":"education","lineage":["https://openalex.org/I4388446366","https://openalex.org/I592451"]},{"id":"https://openalex.org/I4394709130","display_name":"Indiana University School of Medicine","ror":"https://ror.org/02ets8c94","country_code":null,"type":"education","lineage":["https://openalex.org/I4394709130","https://openalex.org/I592451"]},{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jessica Dantzer","raw_affiliation_strings":["1 Department of Medical and Molecular Genetics, 2Center for Computational Biology and Bioinformatics, 3Department of Pediatrics, Herman B Wells Center for Pediatric Research, Indiana University School of Medicine, Indianapolis, IN 46202, 4Center for Genomics and Bioinformatics, Indiana University, Bloomington, IN 47405 and 5The Buck Institute for Age Research, Novato, CA 94945, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Medical and Molecular Genetics, 2Center for Computational Biology and Bioinformatics, 3Department of Pediatrics, Herman B Wells Center for Pediatric Research, Indiana University School of Medicine, Indianapolis, IN 46202, 4Center for Genomics and Bioinformatics, Indiana University, Bloomington, IN 47405 and 5The Buck Institute for Age Research, Novato, CA 94945, USA","institution_ids":["https://openalex.org/I1337826666","https://openalex.org/I4210119109","https://openalex.org/I4388446366","https://openalex.org/I4394709130","https://openalex.org/I55769427"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036161504","display_name":"Brandon J. Peters","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I1337826666","display_name":"Buck Institute for Research on Aging","ror":"https://ror.org/050sv4x28","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1337826666"]},{"id":"https://openalex.org/I4210119109","display_name":"Indiana University Bloomington","ror":"https://ror.org/02k40bc56","country_code":"US","type":"education","lineage":["https://openalex.org/I4210119109","https://openalex.org/I592451"]},{"id":"https://openalex.org/I4388446366","display_name":"Indiana University Indianapolis","ror":"https://ror.org/03eftgw80","country_code":"US","type":"education","lineage":["https://openalex.org/I4388446366","https://openalex.org/I592451"]},{"id":"https://openalex.org/I4394709130","display_name":"Indiana University School of Medicine","ror":"https://ror.org/02ets8c94","country_code":null,"type":"education","lineage":["https://openalex.org/I4394709130","https://openalex.org/I592451"]},{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Brandon Peters","raw_affiliation_strings":["1 Department of Medical and Molecular Genetics, 2Center for Computational Biology and Bioinformatics, 3Department of Pediatrics, Herman B Wells Center for Pediatric Research, Indiana University School of Medicine, Indianapolis, IN 46202, 4Center for Genomics and Bioinformatics, Indiana University, Bloomington, IN 47405 and 5The Buck Institute for Age Research, Novato, CA 94945, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Medical and Molecular Genetics, 2Center for Computational Biology and Bioinformatics, 3Department of Pediatrics, Herman B Wells Center for Pediatric Research, Indiana University School of Medicine, Indianapolis, IN 46202, 4Center for Genomics and Bioinformatics, Indiana University, Bloomington, IN 47405 and 5The Buck Institute for Age Research, Novato, CA 94945, USA","institution_ids":["https://openalex.org/I1337826666","https://openalex.org/I4210119109","https://openalex.org/I4388446366","https://openalex.org/I4394709130","https://openalex.org/I55769427"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5105526312","display_name":"Mary C. Dinauer","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I1337826666","display_name":"Buck Institute for Research on Aging","ror":"https://ror.org/050sv4x28","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1337826666"]},{"id":"https://openalex.org/I4210119109","display_name":"Indiana University Bloomington","ror":"https://ror.org/02k40bc56","country_code":"US","type":"education","lineage":["https://openalex.org/I4210119109","https://openalex.org/I592451"]},{"id":"https://openalex.org/I4388446366","display_name":"Indiana University Indianapolis","ror":"https://ror.org/03eftgw80","country_code":"US","type":"education","lineage":["https://openalex.org/I4388446366","https://openalex.org/I592451"]},{"id":"https://openalex.org/I4394709130","display_name":"Indiana University School of Medicine","ror":"https://ror.org/02ets8c94","country_code":null,"type":"education","lineage":["https://openalex.org/I4394709130","https://openalex.org/I592451"]},{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mary Dinauer","raw_affiliation_strings":["1 Department of Medical and Molecular Genetics, 2Center for Computational Biology and Bioinformatics, 3Department of Pediatrics, Herman B Wells Center for Pediatric Research, Indiana University School of Medicine, Indianapolis, IN 46202, 4Center for Genomics and Bioinformatics, Indiana University, Bloomington, IN 47405 and 5The Buck Institute for Age Research, Novato, CA 94945, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Medical and Molecular Genetics, 2Center for Computational Biology and Bioinformatics, 3Department of Pediatrics, Herman B Wells Center for Pediatric Research, Indiana University School of Medicine, Indianapolis, IN 46202, 4Center for Genomics and Bioinformatics, Indiana University, Bloomington, IN 47405 and 5The Buck Institute for Age Research, Novato, CA 94945, USA","institution_ids":["https://openalex.org/I1337826666","https://openalex.org/I4210119109","https://openalex.org/I4388446366","https://openalex.org/I4394709130","https://openalex.org/I55769427"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077473039","display_name":"Keithanne Mockaitis","orcid":"https://orcid.org/0000-0001-6123-8424","observed_orcids":["https://orcid.org/0000-0001-6123-8424"]},"institutions":[{"id":"https://openalex.org/I1337826666","display_name":"Buck Institute for Research on Aging","ror":"https://ror.org/050sv4x28","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1337826666"]},{"id":"https://openalex.org/I4210119109","display_name":"Indiana University Bloomington","ror":"https://ror.org/02k40bc56","country_code":"US","type":"education","lineage":["https://openalex.org/I4210119109","https://openalex.org/I592451"]},{"id":"https://openalex.org/I4388446366","display_name":"Indiana University Indianapolis","ror":"https://ror.org/03eftgw80","country_code":"US","type":"education","lineage":["https://openalex.org/I4388446366","https://openalex.org/I592451"]},{"id":"https://openalex.org/I4394709130","display_name":"Indiana University School of Medicine","ror":"https://ror.org/02ets8c94","country_code":null,"type":"education","lineage":["https://openalex.org/I4394709130","https://openalex.org/I592451"]},{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Keithanne Mockaitis","raw_affiliation_strings":["1 Department of Medical and Molecular Genetics, 2Center for Computational Biology and Bioinformatics, 3Department of Pediatrics, Herman B Wells Center for Pediatric Research, Indiana University School of Medicine, Indianapolis, IN 46202, 4Center for Genomics and Bioinformatics, Indiana University, Bloomington, IN 47405 and 5The Buck Institute for Age Research, Novato, CA 94945, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Medical and Molecular Genetics, 2Center for Computational Biology and Bioinformatics, 3Department of Pediatrics, Herman B Wells Center for Pediatric Research, Indiana University School of Medicine, Indianapolis, IN 46202, 4Center for Genomics and Bioinformatics, Indiana University, Bloomington, IN 47405 and 5The Buck Institute for Age Research, Novato, CA 94945, USA","institution_ids":["https://openalex.org/I1337826666","https://openalex.org/I4210119109","https://openalex.org/I4388446366","https://openalex.org/I4394709130","https://openalex.org/I55769427"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066000877","display_name":"Sean D. Mooney","orcid":"https://orcid.org/0000-0003-2654-0833","observed_orcids":["https://orcid.org/0000-0003-2654-0833"]},"institutions":[{"id":"https://openalex.org/I1337826666","display_name":"Buck Institute for Research on Aging","ror":"https://ror.org/050sv4x28","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1337826666"]},{"id":"https://openalex.org/I4210119109","display_name":"Indiana University Bloomington","ror":"https://ror.org/02k40bc56","country_code":"US","type":"education","lineage":["https://openalex.org/I4210119109","https://openalex.org/I592451"]},{"id":"https://openalex.org/I4388446366","display_name":"Indiana University Indianapolis","ror":"https://ror.org/03eftgw80","country_code":"US","type":"education","lineage":["https://openalex.org/I4388446366","https://openalex.org/I592451"]},{"id":"https://openalex.org/I4394709130","display_name":"Indiana University School of Medicine","ror":"https://ror.org/02ets8c94","country_code":null,"type":"education","lineage":["https://openalex.org/I4394709130","https://openalex.org/I592451"]},{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sean Mooney","raw_affiliation_strings":["1 Department of Medical and Molecular Genetics, 2Center for Computational Biology and Bioinformatics, 3Department of Pediatrics, Herman B Wells Center for Pediatric Research, Indiana University School of Medicine, Indianapolis, IN 46202, 4Center for Genomics and Bioinformatics, Indiana University, Bloomington, IN 47405 and 5The Buck Institute for Age Research, Novato, CA 94945, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Medical and Molecular Genetics, 2Center for Computational Biology and Bioinformatics, 3Department of Pediatrics, Herman B Wells Center for Pediatric Research, Indiana University School of Medicine, Indianapolis, IN 46202, 4Center for Genomics and Bioinformatics, Indiana University, Bloomington, IN 47405 and 5The Buck Institute for Age Research, Novato, CA 94945, USA","institution_ids":["https://openalex.org/I1337826666","https://openalex.org/I4210119109","https://openalex.org/I4388446366","https://openalex.org/I4394709130","https://openalex.org/I55769427"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5091468377","display_name":"Kenneth G. Cornetta","orcid":"https://orcid.org/0000-0003-1415-3668","observed_orcids":["https://orcid.org/0000-0003-1415-3668"]},"institutions":[{"id":"https://openalex.org/I1337826666","display_name":"Buck Institute for Research on Aging","ror":"https://ror.org/050sv4x28","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1337826666"]},{"id":"https://openalex.org/I4210119109","display_name":"Indiana University Bloomington","ror":"https://ror.org/02k40bc56","country_code":"US","type":"education","lineage":["https://openalex.org/I4210119109","https://openalex.org/I592451"]},{"id":"https://openalex.org/I4388446366","display_name":"Indiana University Indianapolis","ror":"https://ror.org/03eftgw80","country_code":"US","type":"education","lineage":["https://openalex.org/I4388446366","https://openalex.org/I592451"]},{"id":"https://openalex.org/I4394709130","display_name":"Indiana University School of Medicine","ror":"https://ror.org/02ets8c94","country_code":null,"type":"education","lineage":["https://openalex.org/I4394709130","https://openalex.org/I592451"]},{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kenneth Cornetta","raw_affiliation_strings":["1 Department of Medical and Molecular Genetics, 2Center for Computational Biology and Bioinformatics, 3Department of Pediatrics, Herman B Wells Center for Pediatric Research, Indiana University School of Medicine, Indianapolis, IN 46202, 4Center for Genomics and Bioinformatics, Indiana University, Bloomington, IN 47405 and 5The Buck Institute for Age Research, Novato, CA 94945, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 Department of Medical and Molecular Genetics, 2Center for Computational Biology and Bioinformatics, 3Department of Pediatrics, Herman B Wells Center for Pediatric Research, Indiana University School of Medicine, Indianapolis, IN 46202, 4Center for Genomics and Bioinformatics, Indiana University, Bloomington, IN 47405 and 5The Buck Institute for Age Research, Novato, CA 94945, USA","institution_ids":["https://openalex.org/I1337826666","https://openalex.org/I4210119109","https://openalex.org/I4388446366","https://openalex.org/I4394709130","https://openalex.org/I55769427"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5041739082"],"corresponding_institution_ids":["https://openalex.org/I1337826666","https://openalex.org/I4210119109","https://openalex.org/I4388446366","https://openalex.org/I4394709130","https://openalex.org/I55769427"],"apc_list":{"value":3989,"currency":"USD","value_usd":3989},"apc_paid":{"value":3989,"currency":"USD","value_usd":3989},"fwci":1.7672,"has_fulltext":true,"cited_by_count":37,"citation_normalized_percentile":{"value":0.8391261,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"27","issue":"5","first_page":"720","last_page":"722"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.6952999830245972,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.6952999830245972,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10613","display_name":"Virus-based gene therapy research","score":0.24379999935626984,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11213","display_name":"Genomic variations and chromosomal abnormalities","score":0.007300000172108412,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/retroviral-integration-sites","display_name":"retroviral integration sites","score":0.8740000128746033},{"id":"https://openalex.org/keywords/viral-vector-integration","display_name":"viral vector integration","score":0.8899999856948853},{"id":"https://openalex.org/keywords/long-read-sequencing","display_name":"long-read sequencing","score":0.8289999961853027},{"id":"https://openalex.org/keywords/genome-alignment","display_name":"genome alignment","score":0.6940000057220459},{"id":"https://openalex.org/keywords/contig-assembly","display_name":"contig assembly","score":0.671999990940094},{"id":"https://openalex.org/keywords/web-server","display_name":"web server","score":0.6830000281333923},{"id":"https://openalex.org/keywords/cancer-genes","display_name":"cancer genes","score":0.824999988079071},{"id":"https://openalex.org/keywords/gene-therapy","display_name":"gene therapy","score":0.8019999861717224}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.46786025166511536},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.404038667678833},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3958742916584015},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2577742040157318}],"mesh":[{"descriptor_ui":"D012190","descriptor_name":"Retroviridae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012190","descriptor_name":"Retroviridae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012190","descriptor_name":"Retroviridae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012190","descriptor_name":"Retroviridae","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D012190","descriptor_name":"Retroviridae","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D012190","descriptor_name":"Retroviridae","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016662","descriptor_name":"Virus Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016662","descriptor_name":"Virus Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016662","descriptor_name":"Virus Integration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016679","descriptor_name":"Genome, Viral","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btq722","doi":"https://doi.org/10.1093/bioinformatics/btq722","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq722","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/5/720/48866311/bioinformatics_27_5_720.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"listed_in":["abdc-a","anvur-class-a","anvur-scientific","ccf-a","cwts-core","doaj","dongbi-b","doyens","jufo-3","ki-jl-2","medline","norway-2","poland-200","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:21245052","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21245052","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":"Journal Article"},{"id":"pmh:oai:scholarworks.indianapolis.iu.edu:1805/50569","doi":null,"is_oa":true,"landing_page_url":"https://hdl.handle.net/1805/50569","pdf_url":"https://scholarworks.indianapolis.iu.edu/bitstreams/ef99710d-9cde-4ab6-9a33-2a09655bf946/download","source":{"id":"https://openalex.org/S4306400987","display_name":"IUScholarWorks (Indiana University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I592451","host_organization_name":"Indiana University","host_organization_lineage":["https://openalex.org/I592451"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PMC","raw_type":"Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:3042184","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3042184","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btq722","doi":"https://doi.org/10.1093/bioinformatics/btq722","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq722","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/5/720/48866311/bioinformatics_27_5_720.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"listed_in":["abdc-a","anvur-class-a","anvur-scientific","ccf-a","cwts-core","doaj","dongbi-b","doyens","jufo-3","ki-jl-2","medline","norway-2","poland-200","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"sustainable_development_goals_aurora":[{"score":0.5,"id":"https://metadata.un.org/sdg/17","display_name":"Partnerships for the goals"}],"study_designs":[],"awards":[{"id":"https://openalex.org/G1101252293","display_name":null,"funder_award_id":"U54 RR025761","funder_id":"https://openalex.org/F4320337375","funder_display_name":"National Center for Research Resources"},{"id":"https://openalex.org/G3084120896","display_name":null,"funder_award_id":"P01 HL 53586","funder_id":"https://openalex.org/F4320337338","funder_display_name":"National Heart, Lung, and Blood Institute"},{"id":"https://openalex.org/G4528488396","display_name":null,"funder_award_id":"P40 RR024928","funder_id":"https://openalex.org/F4320337375","funder_display_name":"National Center for Research Resources"},{"id":"https://openalex.org/G4696958173","display_name":null,"funder_award_id":"R01 LM009722","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"},{"id":"https://openalex.org/G629616749","display_name":null,"funder_award_id":"T32\u2010HL007910","funder_id":"https://openalex.org/F4320337338","funder_display_name":"National Heart, Lung, and Blood Institute"},{"id":"https://openalex.org/G9000045416","display_name":null,"funder_award_id":"R01 LM009722","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G9000048861","display_name":null,"funder_award_id":"HL007910","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G9000074133","display_name":null,"funder_award_id":"T32 HL007910","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G9000315265","display_name":null,"funder_award_id":"RR025761","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337338","display_name":"National Heart, Lung, and Blood Institute","ror":"https://ror.org/012pb6c26"},{"id":"https://openalex.org/F4320337372","display_name":"U.S. National Library of Medicine","ror":"https://ror.org/0060t0j89"},{"id":"https://openalex.org/F4320337375","display_name":"National Center for Research Resources","ror":"https://ror.org/04pw6fb54"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1990728924.pdf","grobid_xml":"https://content.openalex.org/works/W1990728924.grobid-xml"},"referenced_works_count":23,"referenced_works":["https://openalex.org/W175631674","https://openalex.org/W981517002","https://openalex.org/W1863595023","https://openalex.org/W1971062917","https://openalex.org/W1994739514","https://openalex.org/W2047939728","https://openalex.org/W2061639503","https://openalex.org/W2061845171","https://openalex.org/W2079664984","https://openalex.org/W2081339067","https://openalex.org/W2089367249","https://openalex.org/W2091324357","https://openalex.org/W2093537780","https://openalex.org/W2107046588","https://openalex.org/W2108166985","https://openalex.org/W2132926880","https://openalex.org/W2136139751","https://openalex.org/W2136145671","https://openalex.org/W2137440275","https://openalex.org/W2405265970","https://openalex.org/W4293196852","https://openalex.org/W6619465050","https://openalex.org/W6842402754"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W2382290278","https://openalex.org/W2478288626","https://openalex.org/W2350741829","https://openalex.org/W2530322880","https://openalex.org/W1596801655"],"abstract_inverted_index":{"UNLABELLED:":[0],"Retroviral":[1],"integration":[2,36],"has":[3],"been":[4],"implicated":[5],"in":[6,18,76],"several":[7],"biomedical":[8],"applications,":[9],"including":[10],"identification":[11,32],"of":[12,33,67],"cancer-associated":[13],"genes":[14],"and":[15,27,57,88,91],"malignant":[16],"transformation":[17],"gene":[19],"therapy":[20],"clinical":[21],"trials.":[22],"We":[23],"introduce":[24],"an":[25],"efficient":[26],"scalable":[28],"method":[29,73],"for":[30],"fast":[31],"viral":[34],"vector":[35],"sites":[37],"from":[38],"long":[39],"read":[40],"high-throughput":[41],"sequencing.":[42],"Individual":[43],"sequence":[44],"reads":[45],"are":[46],"masked":[47],"to":[48,53,63],"remove":[49],"non-genomic":[50],"sequence,":[51],"aligned":[52],"the":[54,65],"host":[55],"genome":[56],"assembled":[58],"into":[59],"contiguous":[60],"fragments":[61],"used":[62],"pinpoint":[64],"position":[66],"integration.":[68],"AVAILABILITY":[69],"AND":[70],"IMPLEMENTATION:":[71],"The":[72],"is":[74],"implemented":[75],"a":[77],"publicly":[78],"accessible":[79],"web":[80],"server":[81],"platform,":[82],"SeqMap":[83],"2.0,":[84],"containing":[85],"analysis":[86],"tools":[87],"both":[89],"private":[90],"shared":[92],"lab":[93],"workspaces":[94],"that":[95],"facilitate":[96],"collaboration":[97],"among":[98],"researchers.":[99],"Available":[100],"at":[101],"http://seqmap.compbio.iupui.edu/.":[102]},"counts_by_year":[{"year":2023,"cited_by_count":3},{"year":2021,"cited_by_count":5},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":5},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":7}],"updated_date":"2026-10-08T09:06:37.294493","created_date":"2025-10-10T00:00:00"}
