{"id":"https://openalex.org/W2104690616","doi":"https://doi.org/10.1093/bioinformatics/btq720","title":"Voroprot: an interactive tool for the analysis and visualization of complex geometric features of protein structure","display_name":"Voroprot: an interactive tool for the analysis and visualization of complex geometric features of protein structure","publication_year":2010,"publication_date":"2010-12-24","ids":{"openalex":"https://openalex.org/W2104690616","doi":"https://doi.org/10.1093/bioinformatics/btq720","mag":"2104690616","pmid":"https://pubmed.ncbi.nlm.nih.gov/21186248"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btq720","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq720","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/5/723/48866973/bioinformatics_27_5_723.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/27/5/723/48866973/bioinformatics_27_5_723.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5079599346","display_name":"Kliment Olechnovi\u010d","orcid":"https://orcid.org/0000-0003-4918-9505"},"institutions":[{"id":"https://openalex.org/I173212132","display_name":"Vilnius University","ror":"https://ror.org/03nadee84","country_code":"LT","type":"education","lineage":["https://openalex.org/I173212132"]}],"countries":["LT"],"is_corresponding":false,"raw_author_name":"Kliment Olechnovi\u010d","raw_affiliation_strings":["Institute of Biotechnology, Vilnius University, Grai\u010di\u016bno 8, LT-02241 Vilnius, Lithuania"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Biotechnology, Vilnius University, Grai\u010di\u016bno 8, LT-02241 Vilnius, Lithuania","institution_ids":["https://openalex.org/I173212132"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055704497","display_name":"Mindaugas Margelevi\u010dius","orcid":"https://orcid.org/0000-0003-4981-6708"},"institutions":[{"id":"https://openalex.org/I173212132","display_name":"Vilnius University","ror":"https://ror.org/03nadee84","country_code":"LT","type":"education","lineage":["https://openalex.org/I173212132"]}],"countries":["LT"],"is_corresponding":false,"raw_author_name":"Mindaugas Margelevi\u010dius","raw_affiliation_strings":["Institute of Biotechnology, Vilnius University, Grai\u010di\u016bno 8, LT-02241 Vilnius, Lithuania"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Biotechnology, Vilnius University, Grai\u010di\u016bno 8, LT-02241 Vilnius, Lithuania","institution_ids":["https://openalex.org/I173212132"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5031938940","display_name":"\u010ceslovas Venclovas","orcid":"https://orcid.org/0000-0002-4215-0213"},"institutions":[{"id":"https://openalex.org/I173212132","display_name":"Vilnius University","ror":"https://ror.org/03nadee84","country_code":"LT","type":"education","lineage":["https://openalex.org/I173212132"]}],"countries":["LT"],"is_corresponding":true,"raw_author_name":"\u010ceslovas Venclovas","raw_affiliation_strings":["Institute of Biotechnology, Vilnius University, Grai\u010di\u016bno 8, LT-02241 Vilnius, Lithuania"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Biotechnology, Vilnius University, Grai\u010di\u016bno 8, LT-02241 Vilnius, Lithuania","institution_ids":["https://openalex.org/I173212132"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5031938940"],"corresponding_institution_ids":["https://openalex.org/I173212132"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":2.2604,"has_fulltext":false,"cited_by_count":23,"citation_normalized_percentile":{"value":0.89344966,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"27","issue":"5","first_page":"723","last_page":"724"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10799","display_name":"Data Visualization and Analytics","score":0.9950000047683716,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10799","display_name":"Data Visualization and Analytics","score":0.9950000047683716,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.984499990940094,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/voronoi-diagram","display_name":"Voronoi diagram","score":0.8446919918060303},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.7967205047607422},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6933095455169678},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5777450203895569},{"id":"https://openalex.org/keywords/diagram","display_name":"Diagram","score":0.5185228586196899},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.5164628028869629},{"id":"https://openalex.org/keywords/computer-graphics","display_name":"Computer graphics (images)","score":0.5032073855400085},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.4912406802177429},{"id":"https://openalex.org/keywords/interactive-visualization","display_name":"Interactive visualization","score":0.4347218871116638},{"id":"https://openalex.org/keywords/graph-drawing","display_name":"Graph drawing","score":0.42283183336257935},{"id":"https://openalex.org/keywords/computer-graphics","display_name":"Computer graphics","score":0.41979730129241943},{"id":"https://openalex.org/keywords/computational-science","display_name":"Computational science","score":0.3767164945602417},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3480623960494995},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.2941325902938843},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.21955445408821106},{"id":"https://openalex.org/keywords/geometry","display_name":"Geometry","score":0.1867865025997162},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.11586377024650574},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.08824551105499268}],"concepts":[{"id":"https://openalex.org/C24881265","wikidata":"https://www.wikidata.org/wiki/Q757267","display_name":"Voronoi diagram","level":2,"score":0.8446919918060303},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.7967205047607422},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6933095455169678},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5777450203895569},{"id":"https://openalex.org/C186399060","wikidata":"https://www.wikidata.org/wiki/Q959962","display_name":"Diagram","level":2,"score":0.5185228586196899},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.5164628028869629},{"id":"https://openalex.org/C121684516","wikidata":"https://www.wikidata.org/wiki/Q7600677","display_name":"Computer graphics (images)","level":1,"score":0.5032073855400085},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.4912406802177429},{"id":"https://openalex.org/C64073096","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Interactive visualization","level":3,"score":0.4347218871116638},{"id":"https://openalex.org/C112953755","wikidata":"https://www.wikidata.org/wiki/Q739462","display_name":"Graph drawing","level":3,"score":0.42283183336257935},{"id":"https://openalex.org/C77660652","wikidata":"https://www.wikidata.org/wiki/Q150971","display_name":"Computer graphics","level":2,"score":0.41979730129241943},{"id":"https://openalex.org/C459310","wikidata":"https://www.wikidata.org/wiki/Q117801","display_name":"Computational science","level":1,"score":0.3767164945602417},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3480623960494995},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.2941325902938843},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.21955445408821106},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.1867865025997162},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.11586377024650574},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.08824551105499268}],"mesh":[{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btq720","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq720","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/5/723/48866973/bioinformatics_27_5_723.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:21186248","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21186248","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btq720","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq720","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/5/723/48866973/bioinformatics_27_5_723.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1753475276","display_name":null,"funder_award_id":"55005627","funder_id":"https://openalex.org/F4320306082","funder_display_name":"Howard Hughes Medical Institute"}],"funders":[{"id":"https://openalex.org/F4320306082","display_name":"Howard Hughes Medical Institute","ror":"https://ror.org/006w34k90"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W2104690616.pdf"},"referenced_works_count":12,"referenced_works":["https://openalex.org/W1520127302","https://openalex.org/W1570767246","https://openalex.org/W2031195767","https://openalex.org/W2044672624","https://openalex.org/W2077143670","https://openalex.org/W2078290150","https://openalex.org/W2081897966","https://openalex.org/W2108862685","https://openalex.org/W2119236577","https://openalex.org/W2130009286","https://openalex.org/W2154388132","https://openalex.org/W2495362273"],"related_works":["https://openalex.org/W2315222890","https://openalex.org/W2372262991","https://openalex.org/W2525150146","https://openalex.org/W2150846549","https://openalex.org/W1489077993","https://openalex.org/W1670475185","https://openalex.org/W2113264354","https://openalex.org/W2372676796","https://openalex.org/W4213119407","https://openalex.org/W122726149"],"abstract_inverted_index":{"UNLABELLED:":[0],"We":[1],"present":[2],"Voroprot,":[3],"an":[4],"interactive":[5],"cross-platform":[6],"software":[7],"tool":[8],"that":[9],"provides":[10],"a":[11],"unique":[12],"set":[13],"of":[14,20,29],"capabilities":[15],"for":[16,63],"exploring":[17],"geometric":[18],"features":[19],"protein":[21,44,57],"structure.":[22,58],"Voroprot":[23,60],"allows":[24],"the":[25,30,36,41],"construction":[26],"and":[27,54,66,72],"visualization":[28],"Apollonius":[31,42],"diagram":[32],"(also":[33],"known":[34],"as":[35],"additively":[37],"weighted":[38],"Voronoi":[39],"diagram),":[40],"graph,":[43],"alpha":[45],"shapes,":[46],"interatomic":[47],"contact":[48],"surfaces,":[49,52],"solvent":[50],"accessible":[51],"pockets":[53],"cavities":[55],"inside":[56],"AVAILABILITY:":[59],"is":[61],"available":[62],"Windows,":[64],"Linux":[65],"Mac":[67],"OS":[68],"X":[69],"operating":[70],"systems":[71],"can":[73],"be":[74],"downloaded":[75],"from":[76],"http://www.ibt.lt/bioinformatics/voroprot/.":[77]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":3},{"year":2020,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":4}],"updated_date":"2026-06-23T06:36:01.041984","created_date":"2025-10-10T00:00:00"}
