{"id":"https://openalex.org/W2134492257","doi":"https://doi.org/10.1093/bioinformatics/btq674","title":"Algorithms for sorting unsigned linear genomes by the DCJ operations","display_name":"Algorithms for sorting unsigned linear genomes by the DCJ operations","publication_year":2010,"publication_date":"2010-12-06","ids":{"openalex":"https://openalex.org/W2134492257","doi":"https://doi.org/10.1093/bioinformatics/btq674","mag":"2134492257","pmid":"https://pubmed.ncbi.nlm.nih.gov/21134895"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btq674","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq674","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/3/311/48867438/bioinformatics_27_3_311.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/27/3/311/48867438/bioinformatics_27_3_311.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101836304","display_name":"Haitao Jiang","orcid":"https://orcid.org/0000-0001-6892-5200"},"institutions":[{"id":"https://openalex.org/I23732399","display_name":"Montana State University","ror":"https://ror.org/02w0trx84","country_code":"US","type":"education","lineage":["https://openalex.org/I23732399","https://openalex.org/I4210126032"]},{"id":"https://openalex.org/I154099455","display_name":"Shandong University","ror":"https://ror.org/0207yh398","country_code":"CN","type":"education","lineage":["https://openalex.org/I154099455"]}],"countries":["CN","US"],"is_corresponding":true,"raw_author_name":"Haitao Jiang","raw_affiliation_strings":["1 Department of Computer Science, Montana State University, Bozeman, MT 59717, USA and 2School of Computer Science and Technology, Shandong University, Jinan, China"],"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science, Montana State University, Bozeman, MT 59717, USA and 2School of Computer Science and Technology, Shandong University, Jinan, China","institution_ids":["https://openalex.org/I23732399","https://openalex.org/I154099455"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070925973","display_name":"Binhai Zhu","orcid":null},"institutions":[{"id":"https://openalex.org/I23732399","display_name":"Montana State University","ror":"https://ror.org/02w0trx84","country_code":"US","type":"education","lineage":["https://openalex.org/I23732399","https://openalex.org/I4210126032"]},{"id":"https://openalex.org/I154099455","display_name":"Shandong University","ror":"https://ror.org/0207yh398","country_code":"CN","type":"education","lineage":["https://openalex.org/I154099455"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Binhai Zhu","raw_affiliation_strings":["1 Department of Computer Science, Montana State University, Bozeman, MT 59717, USA and 2School of Computer Science and Technology, Shandong University, Jinan, China"],"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science, Montana State University, Bozeman, MT 59717, USA and 2School of Computer Science and Technology, Shandong University, Jinan, China","institution_ids":["https://openalex.org/I23732399","https://openalex.org/I154099455"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101769221","display_name":"Daming Zhu","orcid":"https://orcid.org/0000-0001-9395-7247"},"institutions":[{"id":"https://openalex.org/I23732399","display_name":"Montana State University","ror":"https://ror.org/02w0trx84","country_code":"US","type":"education","lineage":["https://openalex.org/I23732399","https://openalex.org/I4210126032"]},{"id":"https://openalex.org/I154099455","display_name":"Shandong University","ror":"https://ror.org/0207yh398","country_code":"CN","type":"education","lineage":["https://openalex.org/I154099455"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Daming Zhu","raw_affiliation_strings":["1 Department of Computer Science, Montana State University, Bozeman, MT 59717, USA and 2School of Computer Science and Technology, Shandong University, Jinan, China"],"affiliations":[{"raw_affiliation_string":"1 Department of Computer Science, Montana State University, Bozeman, MT 59717, USA and 2School of Computer Science and Technology, Shandong University, Jinan, China","institution_ids":["https://openalex.org/I23732399","https://openalex.org/I154099455"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5101836304"],"corresponding_institution_ids":["https://openalex.org/I154099455","https://openalex.org/I23732399"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.5693,"has_fulltext":true,"cited_by_count":16,"citation_normalized_percentile":{"value":0.73631756,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"27","issue":"3","first_page":"311","last_page":"316"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13664","display_name":"Genome Rearrangement Algorithms","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T13664","display_name":"Genome Rearrangement Algorithms","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.9955000281333923,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/sorting","display_name":"Sorting","score":0.8541659712791443},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.65137779712677},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.46334630250930786},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.40586650371551514},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.39886367321014404},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.22780737280845642},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.18326109647750854},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.06741639971733093}],"concepts":[{"id":"https://openalex.org/C111696304","wikidata":"https://www.wikidata.org/wiki/Q2303697","display_name":"Sorting","level":2,"score":0.8541659712791443},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.65137779712677},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.46334630250930786},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.40586650371551514},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.39886367321014404},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.22780737280845642},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.18326109647750854},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.06741639971733093}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btq674","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq674","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/3/311/48867438/bioinformatics_27_3_311.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:21134895","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21134895","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btq674","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq674","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/3/311/48867438/bioinformatics_27_3_311.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1231421488","display_name":null,"funder_award_id":"under","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2087396116","display_name":null,"funder_award_id":"China","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2326958899","display_name":null,"funder_award_id":"DMS-0918034","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G4505001189","display_name":null,"funder_award_id":"61070019","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6167303621","display_name":null,"funder_award_id":"61070019","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G661807472","display_name":"Discrete Frechet Distance and Its Biological Applications","funder_award_id":"0918034","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7389820204","display_name":null,"funder_award_id":"60928006","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2134492257.pdf","grobid_xml":"https://content.openalex.org/works/W2134492257.grobid-xml"},"referenced_works_count":21,"referenced_works":["https://openalex.org/W1491688952","https://openalex.org/W1501298776","https://openalex.org/W1536222765","https://openalex.org/W1570425181","https://openalex.org/W1985834365","https://openalex.org/W1989978323","https://openalex.org/W2023749136","https://openalex.org/W2040326319","https://openalex.org/W2067425328","https://openalex.org/W2069004435","https://openalex.org/W2070642495","https://openalex.org/W2103333868","https://openalex.org/W2130849966","https://openalex.org/W2149628296","https://openalex.org/W2913688336","https://openalex.org/W4292230561","https://openalex.org/W4389615669","https://openalex.org/W6601326706","https://openalex.org/W6667269558","https://openalex.org/W6668006595","https://openalex.org/W6679370925"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2051487156","https://openalex.org/W2073681303","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2739612537","https://openalex.org/W2001405890","https://openalex.org/W2382290278","https://openalex.org/W2478288626"],"abstract_inverted_index":{"We":[0],"devise":[1],"a":[2,22],"1.5-approximation":[3],"algorithm":[4,32],"for":[5,12],"UDCJ":[6,20],"by":[7],"exploiting":[8],"the":[9],"distance":[10],"formula":[11],"signed":[13],"genomes.":[14],"In":[15],"addition,":[16],"we":[17],"show":[18],"that":[19],"admits":[21],"weak":[23],"kernel":[24],"of":[25],"size":[26],"2k":[27],"and":[28],"hence":[29],"an":[30],"FPT":[31],"running":[33],"in":[34],"O(2(2k)n)":[35],"time.":[36]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2023,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-04-18T07:56:08.524223","created_date":"2025-10-10T00:00:00"}
