{"id":"https://openalex.org/W2096260517","doi":"https://doi.org/10.1093/bioinformatics/btq673","title":"Genotype calling and mapping of multisite variants using an Atlantic salmon iSelect SNP array","display_name":"Genotype calling and mapping of multisite variants using an Atlantic salmon iSelect SNP array","publication_year":2010,"publication_date":"2010-12-12","ids":{"openalex":"https://openalex.org/W2096260517","doi":"https://doi.org/10.1093/bioinformatics/btq673","mag":"2096260517","pmid":"https://pubmed.ncbi.nlm.nih.gov/21149341"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btq673","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq673","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/3/303/48865750/bioinformatics_27_3_303.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/27/3/303/48865750/bioinformatics_27_3_303.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5058957326","display_name":"Lars Gidskehaug","orcid":null},"institutions":[{"id":"https://openalex.org/I54108979","display_name":"Norwegian University of Life Sciences","ror":"https://ror.org/04a1mvv97","country_code":"NO","type":"education","lineage":["https://openalex.org/I54108979"]}],"countries":["NO"],"is_corresponding":true,"raw_author_name":"Lars Gidskehaug","raw_affiliation_strings":["1 CIGENE/Department of Animal and Aquacultural Sciences, Norwegian University of Life Sciences, N-1432 Aas, Norway and 2Biosciences Research Division, Department of Primary Industries, Victoria, Melbourne 3083, Australia"],"affiliations":[{"raw_affiliation_string":"1 CIGENE/Department of Animal and Aquacultural Sciences, Norwegian University of Life Sciences, N-1432 Aas, Norway and 2Biosciences Research Division, Department of Primary Industries, Victoria, Melbourne 3083, Australia","institution_ids":["https://openalex.org/I54108979"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074648072","display_name":"Matthew Kent","orcid":"https://orcid.org/0000-0001-8822-8533"},"institutions":[{"id":"https://openalex.org/I54108979","display_name":"Norwegian University of Life Sciences","ror":"https://ror.org/04a1mvv97","country_code":"NO","type":"education","lineage":["https://openalex.org/I54108979"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Matthew Kent","raw_affiliation_strings":["1 CIGENE/Department of Animal and Aquacultural Sciences, Norwegian University of Life Sciences, N-1432 Aas, Norway and 2Biosciences Research Division, Department of Primary Industries, Victoria, Melbourne 3083, Australia"],"affiliations":[{"raw_affiliation_string":"1 CIGENE/Department of Animal and Aquacultural Sciences, Norwegian University of Life Sciences, N-1432 Aas, Norway and 2Biosciences Research Division, Department of Primary Industries, Victoria, Melbourne 3083, Australia","institution_ids":["https://openalex.org/I54108979"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058907257","display_name":"Ben J. Hayes","orcid":"https://orcid.org/0000-0002-5606-3970"},"institutions":[{"id":"https://openalex.org/I54108979","display_name":"Norwegian University of Life Sciences","ror":"https://ror.org/04a1mvv97","country_code":"NO","type":"education","lineage":["https://openalex.org/I54108979"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Ben J. Hayes","raw_affiliation_strings":["1 CIGENE/Department of Animal and Aquacultural Sciences, Norwegian University of Life Sciences, N-1432 Aas, Norway and 2Biosciences Research Division, Department of Primary Industries, Victoria, Melbourne 3083, Australia"],"affiliations":[{"raw_affiliation_string":"1 CIGENE/Department of Animal and Aquacultural Sciences, Norwegian University of Life Sciences, N-1432 Aas, Norway and 2Biosciences Research Division, Department of Primary Industries, Victoria, Melbourne 3083, Australia","institution_ids":["https://openalex.org/I54108979"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5085842865","display_name":"Sigbj\u00f8rn Lien","orcid":"https://orcid.org/0000-0002-5159-1950"},"institutions":[{"id":"https://openalex.org/I54108979","display_name":"Norwegian University of Life Sciences","ror":"https://ror.org/04a1mvv97","country_code":"NO","type":"education","lineage":["https://openalex.org/I54108979"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Sigbj\u00f8rn Lien","raw_affiliation_strings":["1 CIGENE/Department of Animal and Aquacultural Sciences, Norwegian University of Life Sciences, N-1432 Aas, Norway and 2Biosciences Research Division, Department of Primary Industries, Victoria, Melbourne 3083, Australia"],"affiliations":[{"raw_affiliation_string":"1 CIGENE/Department of Animal and Aquacultural Sciences, Norwegian University of Life Sciences, N-1432 Aas, Norway and 2Biosciences Research Division, Department of Primary Industries, Victoria, Melbourne 3083, Australia","institution_ids":["https://openalex.org/I54108979"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5058957326"],"corresponding_institution_ids":["https://openalex.org/I54108979"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.9826,"has_fulltext":false,"cited_by_count":66,"citation_normalized_percentile":{"value":0.86010989,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"27","issue":"3","first_page":"303","last_page":"310"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12388","display_name":"Identification and Quantification in Food","score":0.9894000291824341,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12388","display_name":"Identification and Quantification in Food","score":0.9894000291824341,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10012","display_name":"Genetic diversity and population structure","score":0.9860000014305115,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10594","display_name":"Genetic and phenotypic traits in livestock","score":0.9735999703407288,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genotype","display_name":"Genotype","score":0.642430305480957},{"id":"https://openalex.org/keywords/snp","display_name":"SNP","score":0.6312857866287231},{"id":"https://openalex.org/keywords/snp-array","display_name":"SNP array","score":0.562623143196106},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5037116408348083},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.4737723171710968},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4352298080921173},{"id":"https://openalex.org/keywords/single-nucleotide-polymorphism","display_name":"Single-nucleotide polymorphism","score":0.3486967086791992},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3392512798309326},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.2215418815612793}],"concepts":[{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.642430305480957},{"id":"https://openalex.org/C139275648","wikidata":"https://www.wikidata.org/wiki/Q17134011","display_name":"SNP","level":5,"score":0.6312857866287231},{"id":"https://openalex.org/C122060243","wikidata":"https://www.wikidata.org/wiki/Q7391885","display_name":"SNP array","level":5,"score":0.562623143196106},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5037116408348083},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4737723171710968},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4352298080921173},{"id":"https://openalex.org/C153209595","wikidata":"https://www.wikidata.org/wiki/Q501128","display_name":"Single-nucleotide polymorphism","level":4,"score":0.3486967086791992},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3392512798309326},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.2215418815612793}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009664","descriptor_name":"Norway","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009664","descriptor_name":"Norway","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009664","descriptor_name":"Norway","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020317","descriptor_name":"Salmo salar","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020317","descriptor_name":"Salmo salar","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020317","descriptor_name":"Salmo salar","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btq673","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq673","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/3/303/48865750/bioinformatics_27_3_303.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:21149341","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21149341","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btq673","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq673","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/3/303/48865750/bioinformatics_27_3_303.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Life below water","id":"https://metadata.un.org/sdg/14","score":0.8799999952316284}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2096260517.pdf","grobid_xml":"https://content.openalex.org/works/W2096260517.grobid-xml"},"referenced_works_count":21,"referenced_works":["https://openalex.org/W1812217105","https://openalex.org/W1928998639","https://openalex.org/W1967137838","https://openalex.org/W1972628065","https://openalex.org/W1979641457","https://openalex.org/W1999068621","https://openalex.org/W2013444425","https://openalex.org/W2021829013","https://openalex.org/W2081093887","https://openalex.org/W2095816222","https://openalex.org/W2103090173","https://openalex.org/W2105642898","https://openalex.org/W2119501580","https://openalex.org/W2130007527","https://openalex.org/W2135851628","https://openalex.org/W2138619057","https://openalex.org/W2146948473","https://openalex.org/W2155037683","https://openalex.org/W2156502929","https://openalex.org/W2160697532","https://openalex.org/W2161822073"],"related_works":["https://openalex.org/W2164855536","https://openalex.org/W1997352593","https://openalex.org/W2143489661","https://openalex.org/W2070581548","https://openalex.org/W4281711902","https://openalex.org/W3206555169","https://openalex.org/W3016573916","https://openalex.org/W3157359833","https://openalex.org/W2329144129","https://openalex.org/W2410422322"],"abstract_inverted_index":{"R-package":[0],"beadarrayMSV":[1],"freely":[2],"available":[3],"on":[4],"the":[5],"web":[6],"at":[7],"http://cran.r-project.org/.":[8]},"counts_by_year":[{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":6},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":5},{"year":2016,"cited_by_count":10},{"year":2015,"cited_by_count":6},{"year":2014,"cited_by_count":7},{"year":2013,"cited_by_count":7},{"year":2012,"cited_by_count":6}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
