{"id":"https://openalex.org/W2159614853","doi":"https://doi.org/10.1093/bioinformatics/btq662","title":"Toward the estimation of the absolute quality of individual protein structure models","display_name":"Toward the estimation of the absolute quality of individual protein structure models","publication_year":2010,"publication_date":"2010-12-05","ids":{"openalex":"https://openalex.org/W2159614853","doi":"https://doi.org/10.1093/bioinformatics/btq662","mag":"2159614853","pmid":"https://pubmed.ncbi.nlm.nih.gov/21134891"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btq662","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq662","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/3/343/48863520/bioinformatics_27_3_343.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/27/3/343/48863520/bioinformatics_27_3_343.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5080501336","display_name":"Pascal Benkert","orcid":"https://orcid.org/0000-0001-6525-8174"},"institutions":[{"id":"https://openalex.org/I1850255","display_name":"University of Basel","ror":"https://ror.org/02s6k3f65","country_code":"CH","type":"education","lineage":["https://openalex.org/I1850255"]},{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"funder","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":true,"raw_author_name":"Pascal Benkert","raw_affiliation_strings":["1 Biozentrum, University of Basel and 2SIB Swiss Institute of Bioinformatics, Basel, Switzerland"],"affiliations":[{"raw_affiliation_string":"1 Biozentrum, University of Basel and 2SIB Swiss Institute of Bioinformatics, Basel, Switzerland","institution_ids":["https://openalex.org/I12708293","https://openalex.org/I1850255"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5104909443","display_name":"Marco Biasini","orcid":null},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"funder","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I1850255","display_name":"University of Basel","ror":"https://ror.org/02s6k3f65","country_code":"CH","type":"education","lineage":["https://openalex.org/I1850255"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Marco Biasini","raw_affiliation_strings":["1 Biozentrum, University of Basel and 2SIB Swiss Institute of Bioinformatics, Basel, Switzerland"],"affiliations":[{"raw_affiliation_string":"1 Biozentrum, University of Basel and 2SIB Swiss Institute of Bioinformatics, Basel, Switzerland","institution_ids":["https://openalex.org/I12708293","https://openalex.org/I1850255"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5049569891","display_name":"Torsten Schwede","orcid":"https://orcid.org/0000-0003-2715-335X"},"institutions":[{"id":"https://openalex.org/I1850255","display_name":"University of Basel","ror":"https://ror.org/02s6k3f65","country_code":"CH","type":"education","lineage":["https://openalex.org/I1850255"]},{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"funder","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Torsten Schwede","raw_affiliation_strings":["1 Biozentrum, University of Basel and 2SIB Swiss Institute of Bioinformatics, Basel, Switzerland"],"affiliations":[{"raw_affiliation_string":"1 Biozentrum, University of Basel and 2SIB Swiss Institute of Bioinformatics, Basel, Switzerland","institution_ids":["https://openalex.org/I12708293","https://openalex.org/I1850255"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5080501336"],"corresponding_institution_ids":["https://openalex.org/I12708293","https://openalex.org/I1850255"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":23.9909,"has_fulltext":true,"cited_by_count":2275,"citation_normalized_percentile":{"value":0.9977129,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"27","issue":"3","first_page":"343","last_page":"350"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/quality","display_name":"Quality (philosophy)","score":0.5467790365219116},{"id":"https://openalex.org/keywords/protein-structure-prediction","display_name":"Protein structure prediction","score":0.5376222729682922},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5093342065811157},{"id":"https://openalex.org/keywords/protein-data-bank","display_name":"Protein Data Bank (RCSB PDB)","score":0.4279191493988037},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.4257943332195282},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.41566652059555054},{"id":"https://openalex.org/keywords/selection","display_name":"Selection (genetic algorithm)","score":0.4108036160469055},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.4046565592288971},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.35328787565231323},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3179618716239929},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.2963188886642456},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.20129984617233276},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.11163544654846191}],"concepts":[{"id":"https://openalex.org/C2779530757","wikidata":"https://www.wikidata.org/wiki/Q1207505","display_name":"Quality (philosophy)","level":2,"score":0.5467790365219116},{"id":"https://openalex.org/C18051474","wikidata":"https://www.wikidata.org/wiki/Q899656","display_name":"Protein structure prediction","level":3,"score":0.5376222729682922},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5093342065811157},{"id":"https://openalex.org/C65556437","wikidata":"https://www.wikidata.org/wiki/Q766195","display_name":"Protein Data Bank (RCSB PDB)","level":2,"score":0.4279191493988037},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.4257943332195282},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.41566652059555054},{"id":"https://openalex.org/C81917197","wikidata":"https://www.wikidata.org/wiki/Q628760","display_name":"Selection (genetic algorithm)","level":2,"score":0.4108036160469055},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.4046565592288971},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.35328787565231323},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3179618716239929},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.2963188886642456},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.20129984617233276},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.11163544654846191},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D003627","descriptor_name":"Data Interpretation, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003627","descriptor_name":"Data Interpretation, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003627","descriptor_name":"Data Interpretation, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012044","descriptor_name":"Regression Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012044","descriptor_name":"Regression Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012044","descriptor_name":"Regression Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btq662","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq662","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/3/343/48863520/bioinformatics_27_3_343.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:21134891","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21134891","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:doc.rero.ch:295823","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306400148","display_name":"reroDoc Digital Library","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":""},{"id":"pmh:oai:pubmedcentral.nih.gov:3031035","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3031035","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btq662","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq662","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/3/343/48863520/bioinformatics_27_3_343.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320310466","display_name":"Universit\u00e4t Basel","ror":"https://ror.org/02s6k3f65"},{"id":"https://openalex.org/F4320331322","display_name":"Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2159614853.pdf","grobid_xml":"https://content.openalex.org/works/W2159614853.grobid-xml"},"referenced_works_count":57,"referenced_works":["https://openalex.org/W1508885706","https://openalex.org/W1965517743","https://openalex.org/W1972540879","https://openalex.org/W1985168592","https://openalex.org/W1987474460","https://openalex.org/W1990568207","https://openalex.org/W1992192767","https://openalex.org/W1992462914","https://openalex.org/W1996585538","https://openalex.org/W2008708467","https://openalex.org/W2013888408","https://openalex.org/W2017699309","https://openalex.org/W2029377282","https://openalex.org/W2030028095","https://openalex.org/W2031721366","https://openalex.org/W2035503835","https://openalex.org/W2041475318","https://openalex.org/W2047139729","https://openalex.org/W2056061313","https://openalex.org/W2056158391","https://openalex.org/W2057972192","https://openalex.org/W2060809301","https://openalex.org/W2072132202","https://openalex.org/W2073738037","https://openalex.org/W2087254300","https://openalex.org/W2089035513","https://openalex.org/W2096495474","https://openalex.org/W2097642323","https://openalex.org/W2101220662","https://openalex.org/W2102591917","https://openalex.org/W2104879218","https://openalex.org/W2105638686","https://openalex.org/W2106154817","https://openalex.org/W2110483430","https://openalex.org/W2114520383","https://openalex.org/W2119228200","https://openalex.org/W2120230374","https://openalex.org/W2125677968","https://openalex.org/W2128484254","https://openalex.org/W2130479394","https://openalex.org/W2145268834","https://openalex.org/W2145469333","https://openalex.org/W2149315921","https://openalex.org/W2150434184","https://openalex.org/W2152301430","https://openalex.org/W2153153865","https://openalex.org/W2153187042","https://openalex.org/W2153414768","https://openalex.org/W2158714788","https://openalex.org/W2161062388","https://openalex.org/W2161776897","https://openalex.org/W2162751934","https://openalex.org/W2167661287","https://openalex.org/W2170471837","https://openalex.org/W2961359158","https://openalex.org/W4239483646","https://openalex.org/W6649770302"],"related_works":["https://openalex.org/W3171039768","https://openalex.org/W4206949911","https://openalex.org/W2155159626","https://openalex.org/W2121688928","https://openalex.org/W3016550772","https://openalex.org/W2593264178","https://openalex.org/W4361279638","https://openalex.org/W2015390241","https://openalex.org/W1975681040","https://openalex.org/W2081601977"],"abstract_inverted_index":{"The":[0],"Z-score":[1],"calculation":[2],"has":[3],"been":[4],"integrated":[5],"in":[6],"the":[7],"QMEAN":[8],"server":[9],"available":[10],"at:":[11],"http://swissmodel.expasy.org/qmean.":[12]},"counts_by_year":[{"year":2026,"cited_by_count":16},{"year":2025,"cited_by_count":107},{"year":2024,"cited_by_count":170},{"year":2023,"cited_by_count":184},{"year":2022,"cited_by_count":223},{"year":2021,"cited_by_count":289},{"year":2020,"cited_by_count":291},{"year":2019,"cited_by_count":217},{"year":2018,"cited_by_count":135},{"year":2017,"cited_by_count":119},{"year":2016,"cited_by_count":130},{"year":2015,"cited_by_count":104},{"year":2014,"cited_by_count":111},{"year":2013,"cited_by_count":87},{"year":2012,"cited_by_count":70}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
