{"id":"https://openalex.org/W2095932050","doi":"https://doi.org/10.1093/bioinformatics/btq643","title":"RSEQtools: a modular framework to analyze RNA-Seq data using compact, anonymized data summaries","display_name":"RSEQtools: a modular framework to analyze RNA-Seq data using compact, anonymized data summaries","publication_year":2010,"publication_date":"2010-12-05","ids":{"openalex":"https://openalex.org/W2095932050","doi":"https://doi.org/10.1093/bioinformatics/btq643","mag":"2095932050","pmid":"https://pubmed.ncbi.nlm.nih.gov/21134889"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btq643","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq643","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/2/281/48869418/bioinformatics_27_2_281.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/27/2/281/48869418/bioinformatics_27_2_281.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5110693225","display_name":"Lukas Habegger","orcid":null},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]},{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Lukas Habegger","raw_affiliation_strings":["1 Program in Computational Biology and Bioinformatics, 2Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, 3Wyss Institute for Biologically-Inspired Engineering at Harvard, Boston, MA, 4Department of Genetics, Harvard Medical School, Boston, MA, 5Department of Computer Science, Yale University, New Haven, CT and 6Department of Genetics, Stanford University School of Medicine, Stanford, CA, USA"],"affiliations":[{"raw_affiliation_string":"1 Program in Computational Biology and Bioinformatics, 2Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, 3Wyss Institute for Biologically-Inspired Engineering at Harvard, Boston, MA, 4Department of Genetics, Harvard Medical School, Boston, MA, 5Department of Computer Science, Yale University, New Haven, CT and 6Department of Genetics, Stanford University School of Medicine, Stanford, CA, USA","institution_ids":["https://openalex.org/I97018004","https://openalex.org/I136199984","https://openalex.org/I32971472"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047395289","display_name":"Andrea Sboner","orcid":"https://orcid.org/0000-0001-6915-3070"},"institutions":[{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]},{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]},{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Andrea Sboner","raw_affiliation_strings":["1 Program in Computational Biology and Bioinformatics, 2Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, 3Wyss Institute for Biologically-Inspired Engineering at Harvard, Boston, MA, 4Department of Genetics, Harvard Medical School, Boston, MA, 5Department of Computer Science, Yale University, New Haven, CT and 6Department of Genetics, Stanford University School of Medicine, Stanford, CA, USA"],"affiliations":[{"raw_affiliation_string":"1 Program in Computational Biology and Bioinformatics, 2Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, 3Wyss Institute for Biologically-Inspired Engineering at Harvard, Boston, MA, 4Department of Genetics, Harvard Medical School, Boston, MA, 5Department of Computer Science, Yale University, New Haven, CT and 6Department of Genetics, Stanford University School of Medicine, Stanford, CA, USA","institution_ids":["https://openalex.org/I97018004","https://openalex.org/I136199984","https://openalex.org/I32971472"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038803006","display_name":"Tara A. Gianoulis","orcid":null},"institutions":[{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]},{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]},{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Tara A. Gianoulis","raw_affiliation_strings":["1 Program in Computational Biology and Bioinformatics, 2Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, 3Wyss Institute for Biologically-Inspired Engineering at Harvard, Boston, MA, 4Department of Genetics, Harvard Medical School, Boston, MA, 5Department of Computer Science, Yale University, New Haven, CT and 6Department of Genetics, Stanford University School of Medicine, Stanford, CA, USA"],"affiliations":[{"raw_affiliation_string":"1 Program in Computational Biology and Bioinformatics, 2Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, 3Wyss Institute for Biologically-Inspired Engineering at Harvard, Boston, MA, 4Department of Genetics, Harvard Medical School, Boston, MA, 5Department of Computer Science, Yale University, New Haven, CT and 6Department of Genetics, Stanford University School of Medicine, Stanford, CA, USA","institution_ids":["https://openalex.org/I97018004","https://openalex.org/I136199984","https://openalex.org/I32971472"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022975867","display_name":"Joel Rozowsky","orcid":"https://orcid.org/0000-0002-3565-0762"},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]},{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Joel Rozowsky","raw_affiliation_strings":["1 Program in Computational Biology and Bioinformatics, 2Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, 3Wyss Institute for Biologically-Inspired Engineering at Harvard, Boston, MA, 4Department of Genetics, Harvard Medical School, Boston, MA, 5Department of Computer Science, Yale University, New Haven, CT and 6Department of Genetics, Stanford University School of Medicine, Stanford, CA, USA"],"affiliations":[{"raw_affiliation_string":"1 Program in Computational Biology and Bioinformatics, 2Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, 3Wyss Institute for Biologically-Inspired Engineering at Harvard, Boston, MA, 4Department of Genetics, Harvard Medical School, Boston, MA, 5Department of Computer Science, Yale University, New Haven, CT and 6Department of Genetics, Stanford University School of Medicine, Stanford, CA, USA","institution_ids":["https://openalex.org/I97018004","https://openalex.org/I136199984","https://openalex.org/I32971472"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027820479","display_name":"Ashish Agarwal","orcid":null},"institutions":[{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]},{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ashish Agarwal","raw_affiliation_strings":["1 Program in Computational Biology and Bioinformatics, 2Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, 3Wyss Institute for Biologically-Inspired Engineering at Harvard, Boston, MA, 4Department of Genetics, Harvard Medical School, Boston, MA, 5Department of Computer Science, Yale University, New Haven, CT and 6Department of Genetics, Stanford University School of Medicine, Stanford, CA, USA"],"affiliations":[{"raw_affiliation_string":"1 Program in Computational Biology and Bioinformatics, 2Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, 3Wyss Institute for Biologically-Inspired Engineering at Harvard, Boston, MA, 4Department of Genetics, Harvard Medical School, Boston, MA, 5Department of Computer Science, Yale University, New Haven, CT and 6Department of Genetics, Stanford University School of Medicine, Stanford, CA, USA","institution_ids":["https://openalex.org/I97018004","https://openalex.org/I136199984","https://openalex.org/I32971472"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024120181","display_name":"M Snyder","orcid":"https://orcid.org/0000-0003-0784-7987"},"institutions":[{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]},{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael Snyder","raw_affiliation_strings":["1 Program in Computational Biology and Bioinformatics, 2Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, 3Wyss Institute for Biologically-Inspired Engineering at Harvard, Boston, MA, 4Department of Genetics, Harvard Medical School, Boston, MA, 5Department of Computer Science, Yale University, New Haven, CT and 6Department of Genetics, Stanford University School of Medicine, Stanford, CA, USA"],"affiliations":[{"raw_affiliation_string":"1 Program in Computational Biology and Bioinformatics, 2Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, 3Wyss Institute for Biologically-Inspired Engineering at Harvard, Boston, MA, 4Department of Genetics, Harvard Medical School, Boston, MA, 5Department of Computer Science, Yale University, New Haven, CT and 6Department of Genetics, Stanford University School of Medicine, Stanford, CA, USA","institution_ids":["https://openalex.org/I97018004","https://openalex.org/I136199984","https://openalex.org/I32971472"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5042321575","display_name":"Mark Gerstein","orcid":"https://orcid.org/0000-0002-9746-3719"},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]},{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mark Gerstein","raw_affiliation_strings":["1 Program in Computational Biology and Bioinformatics, 2Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, 3Wyss Institute for Biologically-Inspired Engineering at Harvard, Boston, MA, 4Department of Genetics, Harvard Medical School, Boston, MA, 5Department of Computer Science, Yale University, New Haven, CT and 6Department of Genetics, Stanford University School of Medicine, Stanford, CA, USA"],"affiliations":[{"raw_affiliation_string":"1 Program in Computational Biology and Bioinformatics, 2Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, 3Wyss Institute for Biologically-Inspired Engineering at Harvard, Boston, MA, 4Department of Genetics, Harvard Medical School, Boston, MA, 5Department of Computer Science, Yale University, New Haven, CT and 6Department of Genetics, Stanford University School of Medicine, Stanford, CA, USA","institution_ids":["https://openalex.org/I97018004","https://openalex.org/I136199984","https://openalex.org/I32971472"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5110693225"],"corresponding_institution_ids":["https://openalex.org/I136199984","https://openalex.org/I32971472","https://openalex.org/I97018004"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":4.3167,"has_fulltext":true,"cited_by_count":112,"citation_normalized_percentile":{"value":0.95054631,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"27","issue":"2","first_page":"281","last_page":"283"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9807999730110168,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.980400025844574,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8039305806159973},{"id":"https://openalex.org/keywords/modular-design","display_name":"Modular design","score":0.5871603488922119},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.5826429128646851},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5394962430000305},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.5244691371917725},{"id":"https://openalex.org/keywords/suite","display_name":"Suite","score":0.4863022267818451},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.46936801075935364},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.4236394166946411},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3635275363922119},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.35571327805519104},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.22739866375923157},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.17310288548469543},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.10344794392585754},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.09820154309272766}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8039305806159973},{"id":"https://openalex.org/C101468663","wikidata":"https://www.wikidata.org/wiki/Q1620158","display_name":"Modular design","level":2,"score":0.5871603488922119},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.5826429128646851},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5394962430000305},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.5244691371917725},{"id":"https://openalex.org/C79581498","wikidata":"https://www.wikidata.org/wiki/Q1367530","display_name":"Suite","level":2,"score":0.4863022267818451},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.46936801075935364},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.4236394166946411},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3635275363922119},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.35571327805519104},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.22739866375923157},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.17310288548469543},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.10344794392585754},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.09820154309272766},{"id":"https://openalex.org/C166957645","wikidata":"https://www.wikidata.org/wiki/Q23498","display_name":"Archaeology","level":1,"score":0.0},{"id":"https://openalex.org/C95457728","wikidata":"https://www.wikidata.org/wiki/Q309","display_name":"History","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D003219","descriptor_name":"Confidentiality","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003219","descriptor_name":"Confidentiality","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003219","descriptor_name":"Confidentiality","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btq643","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq643","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/2/281/48869418/bioinformatics_27_2_281.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:21134889","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21134889","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:3018817","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3018817","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btq643","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq643","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/2/281/48869418/bioinformatics_27_2_281.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Peace, Justice and strong institutions","score":0.47999998927116394,"id":"https://metadata.un.org/sdg/16"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2095932050.pdf","grobid_xml":"https://content.openalex.org/works/W2095932050.grobid-xml"},"referenced_works_count":11,"referenced_works":["https://openalex.org/W1948797720","https://openalex.org/W1978677326","https://openalex.org/W1981509058","https://openalex.org/W1995078504","https://openalex.org/W2000875411","https://openalex.org/W2025964719","https://openalex.org/W2108234281","https://openalex.org/W2141458291","https://openalex.org/W2143593381","https://openalex.org/W2148088841","https://openalex.org/W2154431984"],"related_works":["https://openalex.org/W4231704780","https://openalex.org/W1511772879","https://openalex.org/W352609212","https://openalex.org/W2083794993","https://openalex.org/W4200340037","https://openalex.org/W4379115841","https://openalex.org/W608917066","https://openalex.org/W4283652261","https://openalex.org/W585424826","https://openalex.org/W3088304681"],"abstract_inverted_index":{"RSEQtools":[0],"is":[1,9],"implemented":[2],"in":[3],"C":[4],"and":[5],"the":[6],"source":[7],"code":[8],"available":[10],"at":[11],"http://rseqtools.gersteinlab.org/.":[12]},"counts_by_year":[{"year":2025,"cited_by_count":5},{"year":2023,"cited_by_count":3},{"year":2021,"cited_by_count":12},{"year":2020,"cited_by_count":8},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":8},{"year":2017,"cited_by_count":7},{"year":2016,"cited_by_count":8},{"year":2015,"cited_by_count":13},{"year":2014,"cited_by_count":14},{"year":2013,"cited_by_count":17},{"year":2012,"cited_by_count":6}],"updated_date":"2026-03-07T16:01:11.037858","created_date":"2025-10-10T00:00:00"}