{"id":"https://openalex.org/W2126276987","doi":"https://doi.org/10.1093/bioinformatics/btq631","title":"Fast and efficient dynamic nested effects models","display_name":"Fast and efficient dynamic nested effects models","publication_year":2010,"publication_date":"2010-11-10","ids":{"openalex":"https://openalex.org/W2126276987","doi":"https://doi.org/10.1093/bioinformatics/btq631","mag":"2126276987","pmid":"https://pubmed.ncbi.nlm.nih.gov/21068003"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btq631","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq631","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5054001409","display_name":"Holger Fr\u00f6hlich","orcid":"https://orcid.org/0000-0002-5328-1243"},"institutions":[{"id":"https://openalex.org/I135140700","display_name":"University of Bonn","ror":"https://ror.org/041nas322","country_code":"DE","type":"education","lineage":["https://openalex.org/I135140700"]},{"id":"https://openalex.org/I189554337","display_name":"Center for Integrated Protein Science Munich","ror":"https://ror.org/032hzb643","country_code":"DE","type":"other","lineage":["https://openalex.org/I149899117","https://openalex.org/I189554337","https://openalex.org/I62916508","https://openalex.org/I8204097"]},{"id":"https://openalex.org/I8204097","display_name":"Ludwig-Maximilians-Universit\u00e4t M\u00fcnchen","ror":"https://ror.org/05591te55","country_code":"DE","type":"education","lineage":["https://openalex.org/I8204097"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Holger Fr\u00f6hlich","raw_affiliation_strings":["1 Rheinische Friedrich-Wilhelms-Universit\u00e4t Bonn, Bonn-Aachen International Center for IT, Dahlmannstrasse 2, 53113 Bonn and 2Department of Chemistry and Biochemistry, Ludwig-Maximilians-Universit\u00e4t M\u00fcnchen, Gene Center Munich and Center for integrated Protein Science CiPSM, Feodor-Lynen-Strasse 25, 81377 Munich, Germany"],"affiliations":[{"raw_affiliation_string":"1 Rheinische Friedrich-Wilhelms-Universit\u00e4t Bonn, Bonn-Aachen International Center for IT, Dahlmannstrasse 2, 53113 Bonn and 2Department of Chemistry and Biochemistry, Ludwig-Maximilians-Universit\u00e4t M\u00fcnchen, Gene Center Munich and Center for integrated Protein Science CiPSM, Feodor-Lynen-Strasse 25, 81377 Munich, Germany","institution_ids":["https://openalex.org/I189554337","https://openalex.org/I8204097","https://openalex.org/I135140700"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044862928","display_name":"Paurush Praveen","orcid":"https://orcid.org/0000-0003-1155-4140"},"institutions":[{"id":"https://openalex.org/I8204097","display_name":"Ludwig-Maximilians-Universit\u00e4t M\u00fcnchen","ror":"https://ror.org/05591te55","country_code":"DE","type":"education","lineage":["https://openalex.org/I8204097"]},{"id":"https://openalex.org/I189554337","display_name":"Center for Integrated Protein Science Munich","ror":"https://ror.org/032hzb643","country_code":"DE","type":"other","lineage":["https://openalex.org/I149899117","https://openalex.org/I189554337","https://openalex.org/I62916508","https://openalex.org/I8204097"]},{"id":"https://openalex.org/I135140700","display_name":"University of Bonn","ror":"https://ror.org/041nas322","country_code":"DE","type":"education","lineage":["https://openalex.org/I135140700"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Paurush Praveen","raw_affiliation_strings":["1 Rheinische Friedrich-Wilhelms-Universit\u00e4t Bonn, Bonn-Aachen International Center for IT, Dahlmannstrasse 2, 53113 Bonn and 2Department of Chemistry and Biochemistry, Ludwig-Maximilians-Universit\u00e4t M\u00fcnchen, Gene Center Munich and Center for integrated Protein Science CiPSM, Feodor-Lynen-Strasse 25, 81377 Munich, Germany"],"affiliations":[{"raw_affiliation_string":"1 Rheinische Friedrich-Wilhelms-Universit\u00e4t Bonn, Bonn-Aachen International Center for IT, Dahlmannstrasse 2, 53113 Bonn and 2Department of Chemistry and Biochemistry, Ludwig-Maximilians-Universit\u00e4t M\u00fcnchen, Gene Center Munich and Center for integrated Protein Science CiPSM, Feodor-Lynen-Strasse 25, 81377 Munich, Germany","institution_ids":["https://openalex.org/I189554337","https://openalex.org/I8204097","https://openalex.org/I135140700"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5051074804","display_name":"Achim Tresch","orcid":"https://orcid.org/0000-0002-4146-6371"},"institutions":[{"id":"https://openalex.org/I189554337","display_name":"Center for Integrated Protein Science Munich","ror":"https://ror.org/032hzb643","country_code":"DE","type":"other","lineage":["https://openalex.org/I149899117","https://openalex.org/I189554337","https://openalex.org/I62916508","https://openalex.org/I8204097"]},{"id":"https://openalex.org/I135140700","display_name":"University of Bonn","ror":"https://ror.org/041nas322","country_code":"DE","type":"education","lineage":["https://openalex.org/I135140700"]},{"id":"https://openalex.org/I8204097","display_name":"Ludwig-Maximilians-Universit\u00e4t M\u00fcnchen","ror":"https://ror.org/05591te55","country_code":"DE","type":"education","lineage":["https://openalex.org/I8204097"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Achim Tresch","raw_affiliation_strings":["1 Rheinische Friedrich-Wilhelms-Universit\u00e4t Bonn, Bonn-Aachen International Center for IT, Dahlmannstrasse 2, 53113 Bonn and 2Department of Chemistry and Biochemistry, Ludwig-Maximilians-Universit\u00e4t M\u00fcnchen, Gene Center Munich and Center for integrated Protein Science CiPSM, Feodor-Lynen-Strasse 25, 81377 Munich, Germany"],"affiliations":[{"raw_affiliation_string":"1 Rheinische Friedrich-Wilhelms-Universit\u00e4t Bonn, Bonn-Aachen International Center for IT, Dahlmannstrasse 2, 53113 Bonn and 2Department of Chemistry and Biochemistry, Ludwig-Maximilians-Universit\u00e4t M\u00fcnchen, Gene Center Munich and Center for integrated Protein Science CiPSM, Feodor-Lynen-Strasse 25, 81377 Munich, Germany","institution_ids":["https://openalex.org/I189554337","https://openalex.org/I8204097","https://openalex.org/I135140700"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5054001409"],"corresponding_institution_ids":["https://openalex.org/I135140700","https://openalex.org/I189554337","https://openalex.org/I8204097"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.9487,"has_fulltext":false,"cited_by_count":30,"citation_normalized_percentile":{"value":0.74570075,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"27","issue":"2","first_page":"238","last_page":"244"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.995199978351593,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6650803089141846},{"id":"https://openalex.org/keywords/signal-flow-graph","display_name":"Signal-flow graph","score":0.5702719688415527},{"id":"https://openalex.org/keywords/upstream","display_name":"Upstream (networking)","score":0.5585656762123108},{"id":"https://openalex.org/keywords/nanoelectromechanical-systems","display_name":"Nanoelectromechanical systems","score":0.5309540629386902},{"id":"https://openalex.org/keywords/bayesian-probability","display_name":"Bayesian probability","score":0.4861754775047302},{"id":"https://openalex.org/keywords/perturbation","display_name":"Perturbation (astronomy)","score":0.45908206701278687},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.44912999868392944},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.43920233845710754},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.35382822155952454},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.24824610352516174},{"id":"https://openalex.org/keywords/telecommunications","display_name":"Telecommunications","score":0.1059918999671936},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.10180959105491638},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.07842320203781128}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6650803089141846},{"id":"https://openalex.org/C166501922","wikidata":"https://www.wikidata.org/wiki/Q1786523","display_name":"Signal-flow graph","level":2,"score":0.5702719688415527},{"id":"https://openalex.org/C191172861","wikidata":"https://www.wikidata.org/wiki/Q7899321","display_name":"Upstream (networking)","level":2,"score":0.5585656762123108},{"id":"https://openalex.org/C173409883","wikidata":"https://www.wikidata.org/wiki/Q175593","display_name":"Nanoelectromechanical systems","level":4,"score":0.5309540629386902},{"id":"https://openalex.org/C107673813","wikidata":"https://www.wikidata.org/wiki/Q812534","display_name":"Bayesian probability","level":2,"score":0.4861754775047302},{"id":"https://openalex.org/C177918212","wikidata":"https://www.wikidata.org/wiki/Q803623","display_name":"Perturbation (astronomy)","level":2,"score":0.45908206701278687},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.44912999868392944},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.43920233845710754},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.35382822155952454},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.24824610352516174},{"id":"https://openalex.org/C76155785","wikidata":"https://www.wikidata.org/wiki/Q418","display_name":"Telecommunications","level":1,"score":0.1059918999671936},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.10180959105491638},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.07842320203781128},{"id":"https://openalex.org/C15083742","wikidata":"https://www.wikidata.org/wiki/Q261659","display_name":"Nanomedicine","level":3,"score":0.0},{"id":"https://openalex.org/C42360764","wikidata":"https://www.wikidata.org/wiki/Q83588","display_name":"Chemical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C155672457","wikidata":"https://www.wikidata.org/wiki/Q61231","display_name":"Nanoparticle","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053595","descriptor_name":"Embryonic Stem Cells","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D053595","descriptor_name":"Embryonic Stem Cells","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D053595","descriptor_name":"Embryonic Stem Cells","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btq631","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq631","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:21068003","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21068003","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.6899999976158142,"display_name":"Reduced inequalities","id":"https://metadata.un.org/sdg/10"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":41,"referenced_works":["https://openalex.org/W1568586930","https://openalex.org/W1570643690","https://openalex.org/W1599969036","https://openalex.org/W1647075334","https://openalex.org/W1975200987","https://openalex.org/W1978308088","https://openalex.org/W1990930479","https://openalex.org/W1991080676","https://openalex.org/W2008109277","https://openalex.org/W2019136808","https://openalex.org/W2020363669","https://openalex.org/W2030924551","https://openalex.org/W2038716712","https://openalex.org/W2050502901","https://openalex.org/W2056576969","https://openalex.org/W2073307618","https://openalex.org/W2100603120","https://openalex.org/W2110920860","https://openalex.org/W2116566535","https://openalex.org/W2117033519","https://openalex.org/W2119541898","https://openalex.org/W2119778725","https://openalex.org/W2124876377","https://openalex.org/W2125904845","https://openalex.org/W2142394837","https://openalex.org/W2143891888","https://openalex.org/W2144791939","https://openalex.org/W2147356380","https://openalex.org/W2148138869","https://openalex.org/W2148469226","https://openalex.org/W2148780239","https://openalex.org/W2161297153","https://openalex.org/W2162871532","https://openalex.org/W3104000671","https://openalex.org/W3104952140","https://openalex.org/W3133236490","https://openalex.org/W4231704412","https://openalex.org/W4299515571","https://openalex.org/W4399588103","https://openalex.org/W6644964175","https://openalex.org/W6664904606"],"related_works":["https://openalex.org/W4317346967","https://openalex.org/W4285099144","https://openalex.org/W2103643982","https://openalex.org/W4384818178","https://openalex.org/W2044189165","https://openalex.org/W3107655241","https://openalex.org/W3023789712","https://openalex.org/W2048794087","https://openalex.org/W2607451680","https://openalex.org/W3015255412"],"abstract_inverted_index":{"The":[0],"implementation":[1],"(R":[2],"and":[3],"C)":[4],"is":[5],"part":[6],"of":[7],"the":[8],"Supplement":[9],"to":[10],"this":[11],"article.":[12]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":4},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":5},{"year":2012,"cited_by_count":1}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
