{"id":"https://openalex.org/W2168040923","doi":"https://doi.org/10.1093/bioinformatics/btq610","title":"Protein Peeling 3D: new tools for analyzing protein structures","display_name":"Protein Peeling 3D: new tools for analyzing protein structures","publication_year":2010,"publication_date":"2010-11-11","ids":{"openalex":"https://openalex.org/W2168040923","doi":"https://doi.org/10.1093/bioinformatics/btq610","mag":"2168040923","pmid":"https://pubmed.ncbi.nlm.nih.gov/21075745"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btq610","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq610","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/1/132/48862035/bioinformatics_27_1_132.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/27/1/132/48862035/bioinformatics_27_1_132.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5060243916","display_name":"Jean\u2010Christophe Gelly","orcid":"https://orcid.org/0000-0001-5138-361X"},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]},{"id":"https://openalex.org/I4210091780","display_name":"Institut National de la Transfusion Sanguine","ror":"https://ror.org/00fh58138","country_code":"FR","type":"facility","lineage":["https://openalex.org/I4210091780"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Jean-Christophe Gelly","raw_affiliation_strings":["Dynamique des Structures et Interactions des Macromol\u00e9cules Biologiques, INSERM UMR-S 665, Universit\u00e9 Paris Diderot-Paris 7, Institut National de la Transfusion Sanguine 6, rue Alexandre Cabanel 75739 Paris Cedex 15, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dynamique des Structures et Interactions des Macromol\u00e9cules Biologiques, INSERM UMR-S 665, Universit\u00e9 Paris Diderot-Paris 7, Institut National de la Transfusion Sanguine 6, rue Alexandre Cabanel 75739 Paris Cedex 15, France","institution_ids":["https://openalex.org/I4210091780","https://openalex.org/I204730241","https://openalex.org/I154526488"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5024376929","display_name":"Alexandre G. de Brevern","orcid":"https://orcid.org/0000-0001-7112-5626"},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]},{"id":"https://openalex.org/I4210091780","display_name":"Institut National de la Transfusion Sanguine","ror":"https://ror.org/00fh58138","country_code":"FR","type":"facility","lineage":["https://openalex.org/I4210091780"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Alexandre G. de Brevern","raw_affiliation_strings":["Dynamique des Structures et Interactions des Macromol\u00e9cules Biologiques, INSERM UMR-S 665, Universit\u00e9 Paris Diderot-Paris 7, Institut National de la Transfusion Sanguine 6, rue Alexandre Cabanel 75739 Paris Cedex 15, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dynamique des Structures et Interactions des Macromol\u00e9cules Biologiques, INSERM UMR-S 665, Universit\u00e9 Paris Diderot-Paris 7, Institut National de la Transfusion Sanguine 6, rue Alexandre Cabanel 75739 Paris Cedex 15, France","institution_ids":["https://openalex.org/I4210091780","https://openalex.org/I204730241","https://openalex.org/I154526488"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5060243916"],"corresponding_institution_ids":["https://openalex.org/I154526488","https://openalex.org/I204730241","https://openalex.org/I4210091780"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.537,"has_fulltext":false,"cited_by_count":21,"citation_normalized_percentile":{"value":0.67045986,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"27","issue":"1","first_page":"132","last_page":"133"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/login","display_name":"Login","score":0.7716265916824341},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7609026432037354},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.6551123857498169},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.5076109170913696},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.45531165599823},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.23062127828598022},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.14682626724243164},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.13078460097312927}],"concepts":[{"id":"https://openalex.org/C113324615","wikidata":"https://www.wikidata.org/wiki/Q472302","display_name":"Login","level":2,"score":0.7716265916824341},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7609026432037354},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.6551123857498169},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.5076109170913696},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.45531165599823},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.23062127828598022},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.14682626724243164},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.13078460097312927},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btq610","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq610","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/1/132/48862035/bioinformatics_27_1_132.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:21075745","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21075745","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:HAL:inserm-00568165v1","is_oa":true,"landing_page_url":"https://inserm.hal.science/inserm-00568165","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, 2011, 27 (1), pp.132-3. ⟨10.1093/bioinformatics/btq610⟩","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btq610","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq610","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/27/1/132/48862035/bioinformatics_27_1_132.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W2168040923.pdf"},"referenced_works_count":12,"referenced_works":["https://openalex.org/W203076040","https://openalex.org/W1632044512","https://openalex.org/W1987015207","https://openalex.org/W1999613945","https://openalex.org/W2085277871","https://openalex.org/W2097775420","https://openalex.org/W2107326055","https://openalex.org/W2111374837","https://openalex.org/W2130479394","https://openalex.org/W2133062651","https://openalex.org/W2138116388","https://openalex.org/W2148077714"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W4256170434","https://openalex.org/W4233948907","https://openalex.org/W4235220108","https://openalex.org/W4315650027","https://openalex.org/W2145118195","https://openalex.org/W2107326055","https://openalex.org/W3118344282","https://openalex.org/W2117699649","https://openalex.org/W2146674646"],"abstract_inverted_index":{"UNLABELLED:":[0],"We":[1],"present":[2],"an":[3,28],"improved":[4],"version":[5],"of":[6,16,23,36,40,46,49],"our":[7],"Protein":[8],"Peeling":[9],"web":[10],"server":[11],"dedicated":[12],"to":[13,60],"the":[14,21,47],"analysis":[15],"protein":[17,24,50],"structure":[18],"architecture":[19],"through":[20],"identification":[22,35],"units":[25],"produced":[26],"by":[27],"iterative":[29],"splitting":[30],"algorithm.":[31],"New":[32],"features":[33],"include":[34],"structural":[37],"domains,":[38],"detection":[39],"unstructured":[41],"terminal":[42],"elements":[43],"and":[44,58],"evaluation":[45],"stability":[48],"unit":[51],"structures.":[52],"AVAILABILITY:":[53],"The":[54],"website":[55],"is":[56],"free":[57],"open":[59],"all":[61],"users":[62],"with":[63],"no":[64],"login":[65],"requirements":[66],"at":[67],"http://www.dsimb.inserm.fr/dsimb-tools/peeling3.":[68]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":4},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":1}],"updated_date":"2026-07-02T09:51:11.867554","created_date":"2025-10-10T00:00:00"}