{"id":"https://openalex.org/W2134815007","doi":"https://doi.org/10.1093/bioinformatics/btq572","title":"Pre-calculated protein structure alignments at the RCSB PDB website","display_name":"Pre-calculated protein structure alignments at the RCSB PDB website","publication_year":2010,"publication_date":"2010-10-10","ids":{"openalex":"https://openalex.org/W2134815007","doi":"https://doi.org/10.1093/bioinformatics/btq572","mag":"2134815007","pmid":"https://pubmed.ncbi.nlm.nih.gov/20937596"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btq572","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq572","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/23/2983/48850922/bioinformatics_26_23_2983.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/26/23/2983/48850922/bioinformatics_26_23_2983.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5077634829","display_name":"Andreas Prli\u0107","orcid":"https://orcid.org/0000-0001-6346-6391"},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California, San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]},{"id":"https://openalex.org/I181653535","display_name":"San Diego Supercomputer Center","ror":"https://ror.org/04mg3nk07","country_code":"US","type":"facility","lineage":["https://openalex.org/I181653535","https://openalex.org/I36258959"]},{"id":"https://openalex.org/I4210091204","display_name":"Joint Center for Structural Genomics","ror":"https://ror.org/00exr1241","country_code":"US","type":"other","lineage":["https://openalex.org/I4210091204"]},{"id":"https://openalex.org/I114027177","display_name":"University of North Carolina at Chapel Hill","ror":"https://ror.org/0130frc33","country_code":"US","type":"education","lineage":["https://openalex.org/I114027177"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Andreas Prli\u0107","raw_affiliation_strings":["1 San Diego Supercomputer Center, University of California San Diego, 9500 Gilman Drive, Mailcode 0505 La Jolla, CA 92093-0505, 2Bioinformatics Program, University of California, San Diego, 9500 Gilman Drive, La Jolla, CA 92093, 3Renaissance Computing Institute, University of North Carolina at Chapel Hill, NC 27517, 4Joint Center for Structural Genomics, Bioinformatics Core, University of California at San Diego, La Jolla, CA 92093 and 5Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, 9500 Gilman Drive, Mailcode 0743, La Jolla, CA 92093-0743 USA"],"affiliations":[{"raw_affiliation_string":"1 San Diego Supercomputer Center, University of California San Diego, 9500 Gilman Drive, Mailcode 0505 La Jolla, CA 92093-0505, 2Bioinformatics Program, University of California, San Diego, 9500 Gilman Drive, La Jolla, CA 92093, 3Renaissance Computing Institute, University of North Carolina at Chapel Hill, NC 27517, 4Joint Center for Structural Genomics, Bioinformatics Core, University of California at San Diego, La Jolla, CA 92093 and 5Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, 9500 Gilman Drive, Mailcode 0743, La Jolla, CA 92093-0743 USA","institution_ids":["https://openalex.org/I36258959","https://openalex.org/I181653535","https://openalex.org/I114027177","https://openalex.org/I4210091204"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007217819","display_name":"Spencer Bliven","orcid":"https://orcid.org/0000-0002-1200-1698"},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California, San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]},{"id":"https://openalex.org/I4210091204","display_name":"Joint Center for Structural Genomics","ror":"https://ror.org/00exr1241","country_code":"US","type":"other","lineage":["https://openalex.org/I4210091204"]},{"id":"https://openalex.org/I181653535","display_name":"San Diego Supercomputer Center","ror":"https://ror.org/04mg3nk07","country_code":"US","type":"facility","lineage":["https://openalex.org/I181653535","https://openalex.org/I36258959"]},{"id":"https://openalex.org/I114027177","display_name":"University of North Carolina at Chapel Hill","ror":"https://ror.org/0130frc33","country_code":"US","type":"education","lineage":["https://openalex.org/I114027177"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Spencer Bliven","raw_affiliation_strings":["1 San Diego Supercomputer Center, University of California San Diego, 9500 Gilman Drive, Mailcode 0505 La Jolla, CA 92093-0505, 2Bioinformatics Program, University of California, San Diego, 9500 Gilman Drive, La Jolla, CA 92093, 3Renaissance Computing Institute, University of North Carolina at Chapel Hill, NC 27517, 4Joint Center for Structural Genomics, Bioinformatics Core, University of California at San Diego, La Jolla, CA 92093 and 5Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, 9500 Gilman Drive, Mailcode 0743, La Jolla, CA 92093-0743 USA"],"affiliations":[{"raw_affiliation_string":"1 San Diego Supercomputer Center, University of California San Diego, 9500 Gilman Drive, Mailcode 0505 La Jolla, CA 92093-0505, 2Bioinformatics Program, University of California, San Diego, 9500 Gilman Drive, La Jolla, CA 92093, 3Renaissance Computing Institute, University of North Carolina at Chapel Hill, NC 27517, 4Joint Center for Structural Genomics, Bioinformatics Core, University of California at San Diego, La Jolla, CA 92093 and 5Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, 9500 Gilman Drive, Mailcode 0743, La Jolla, CA 92093-0743 USA","institution_ids":["https://openalex.org/I36258959","https://openalex.org/I181653535","https://openalex.org/I114027177","https://openalex.org/I4210091204"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070583038","display_name":"Peter W. Rose","orcid":"https://orcid.org/0000-0001-9981-9750"},"institutions":[{"id":"https://openalex.org/I114027177","display_name":"University of North Carolina at Chapel Hill","ror":"https://ror.org/0130frc33","country_code":"US","type":"education","lineage":["https://openalex.org/I114027177"]},{"id":"https://openalex.org/I181653535","display_name":"San Diego Supercomputer Center","ror":"https://ror.org/04mg3nk07","country_code":"US","type":"facility","lineage":["https://openalex.org/I181653535","https://openalex.org/I36258959"]},{"id":"https://openalex.org/I4210091204","display_name":"Joint Center for Structural Genomics","ror":"https://ror.org/00exr1241","country_code":"US","type":"other","lineage":["https://openalex.org/I4210091204"]},{"id":"https://openalex.org/I36258959","display_name":"University of California, San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Peter W. Rose","raw_affiliation_strings":["1 San Diego Supercomputer Center, University of California San Diego, 9500 Gilman Drive, Mailcode 0505 La Jolla, CA 92093-0505, 2Bioinformatics Program, University of California, San Diego, 9500 Gilman Drive, La Jolla, CA 92093, 3Renaissance Computing Institute, University of North Carolina at Chapel Hill, NC 27517, 4Joint Center for Structural Genomics, Bioinformatics Core, University of California at San Diego, La Jolla, CA 92093 and 5Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, 9500 Gilman Drive, Mailcode 0743, La Jolla, CA 92093-0743 USA"],"affiliations":[{"raw_affiliation_string":"1 San Diego Supercomputer Center, University of California San Diego, 9500 Gilman Drive, Mailcode 0505 La Jolla, CA 92093-0505, 2Bioinformatics Program, University of California, San Diego, 9500 Gilman Drive, La Jolla, CA 92093, 3Renaissance Computing Institute, University of North Carolina at Chapel Hill, NC 27517, 4Joint Center for Structural Genomics, Bioinformatics Core, University of California at San Diego, La Jolla, CA 92093 and 5Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, 9500 Gilman Drive, Mailcode 0743, La Jolla, CA 92093-0743 USA","institution_ids":["https://openalex.org/I36258959","https://openalex.org/I181653535","https://openalex.org/I114027177","https://openalex.org/I4210091204"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053815083","display_name":"Wolfgang F. Bluhm","orcid":null},"institutions":[{"id":"https://openalex.org/I4210091204","display_name":"Joint Center for Structural Genomics","ror":"https://ror.org/00exr1241","country_code":"US","type":"other","lineage":["https://openalex.org/I4210091204"]},{"id":"https://openalex.org/I36258959","display_name":"University of California, San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]},{"id":"https://openalex.org/I181653535","display_name":"San Diego Supercomputer Center","ror":"https://ror.org/04mg3nk07","country_code":"US","type":"facility","lineage":["https://openalex.org/I181653535","https://openalex.org/I36258959"]},{"id":"https://openalex.org/I114027177","display_name":"University of North Carolina at Chapel Hill","ror":"https://ror.org/0130frc33","country_code":"US","type":"education","lineage":["https://openalex.org/I114027177"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Wolfgang F. Bluhm","raw_affiliation_strings":["1 San Diego Supercomputer Center, University of California San Diego, 9500 Gilman Drive, Mailcode 0505 La Jolla, CA 92093-0505, 2Bioinformatics Program, University of California, San Diego, 9500 Gilman Drive, La Jolla, CA 92093, 3Renaissance Computing Institute, University of North Carolina at Chapel Hill, NC 27517, 4Joint Center for Structural Genomics, Bioinformatics Core, University of California at San Diego, La Jolla, CA 92093 and 5Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, 9500 Gilman Drive, Mailcode 0743, La Jolla, CA 92093-0743 USA"],"affiliations":[{"raw_affiliation_string":"1 San Diego Supercomputer Center, University of California San Diego, 9500 Gilman Drive, Mailcode 0505 La Jolla, CA 92093-0505, 2Bioinformatics Program, University of California, San Diego, 9500 Gilman Drive, La Jolla, CA 92093, 3Renaissance Computing Institute, University of North Carolina at Chapel Hill, NC 27517, 4Joint Center for Structural Genomics, Bioinformatics Core, University of California at San Diego, La Jolla, CA 92093 and 5Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, 9500 Gilman Drive, Mailcode 0743, La Jolla, CA 92093-0743 USA","institution_ids":["https://openalex.org/I36258959","https://openalex.org/I181653535","https://openalex.org/I114027177","https://openalex.org/I4210091204"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053800597","display_name":"Chris Bizon","orcid":null},"institutions":[{"id":"https://openalex.org/I4210091204","display_name":"Joint Center for Structural Genomics","ror":"https://ror.org/00exr1241","country_code":"US","type":"other","lineage":["https://openalex.org/I4210091204"]},{"id":"https://openalex.org/I181653535","display_name":"San Diego Supercomputer Center","ror":"https://ror.org/04mg3nk07","country_code":"US","type":"facility","lineage":["https://openalex.org/I181653535","https://openalex.org/I36258959"]},{"id":"https://openalex.org/I36258959","display_name":"University of California, San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]},{"id":"https://openalex.org/I114027177","display_name":"University of North Carolina at Chapel Hill","ror":"https://ror.org/0130frc33","country_code":"US","type":"education","lineage":["https://openalex.org/I114027177"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chris Bizon","raw_affiliation_strings":["1 San Diego Supercomputer Center, University of California San Diego, 9500 Gilman Drive, Mailcode 0505 La Jolla, CA 92093-0505, 2Bioinformatics Program, University of California, San Diego, 9500 Gilman Drive, La Jolla, CA 92093, 3Renaissance Computing Institute, University of North Carolina at Chapel Hill, NC 27517, 4Joint Center for Structural Genomics, Bioinformatics Core, University of California at San Diego, La Jolla, CA 92093 and 5Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, 9500 Gilman Drive, Mailcode 0743, La Jolla, CA 92093-0743 USA"],"affiliations":[{"raw_affiliation_string":"1 San Diego Supercomputer Center, University of California San Diego, 9500 Gilman Drive, Mailcode 0505 La Jolla, CA 92093-0505, 2Bioinformatics Program, University of California, San Diego, 9500 Gilman Drive, La Jolla, CA 92093, 3Renaissance Computing Institute, University of North Carolina at Chapel Hill, NC 27517, 4Joint Center for Structural Genomics, Bioinformatics Core, University of California at San Diego, La Jolla, CA 92093 and 5Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, 9500 Gilman Drive, Mailcode 0743, La Jolla, CA 92093-0743 USA","institution_ids":["https://openalex.org/I36258959","https://openalex.org/I181653535","https://openalex.org/I114027177","https://openalex.org/I4210091204"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010671148","display_name":"Adam Godzik","orcid":"https://orcid.org/0000-0002-2425-852X"},"institutions":[{"id":"https://openalex.org/I4210091204","display_name":"Joint Center for Structural Genomics","ror":"https://ror.org/00exr1241","country_code":"US","type":"other","lineage":["https://openalex.org/I4210091204"]},{"id":"https://openalex.org/I114027177","display_name":"University of North Carolina at Chapel Hill","ror":"https://ror.org/0130frc33","country_code":"US","type":"education","lineage":["https://openalex.org/I114027177"]},{"id":"https://openalex.org/I181653535","display_name":"San Diego Supercomputer Center","ror":"https://ror.org/04mg3nk07","country_code":"US","type":"facility","lineage":["https://openalex.org/I181653535","https://openalex.org/I36258959"]},{"id":"https://openalex.org/I36258959","display_name":"University of California, San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Adam Godzik","raw_affiliation_strings":["1 San Diego Supercomputer Center, University of California San Diego, 9500 Gilman Drive, Mailcode 0505 La Jolla, CA 92093-0505, 2Bioinformatics Program, University of California, San Diego, 9500 Gilman Drive, La Jolla, CA 92093, 3Renaissance Computing Institute, University of North Carolina at Chapel Hill, NC 27517, 4Joint Center for Structural Genomics, Bioinformatics Core, University of California at San Diego, La Jolla, CA 92093 and 5Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, 9500 Gilman Drive, Mailcode 0743, La Jolla, CA 92093-0743 USA"],"affiliations":[{"raw_affiliation_string":"1 San Diego Supercomputer Center, University of California San Diego, 9500 Gilman Drive, Mailcode 0505 La Jolla, CA 92093-0505, 2Bioinformatics Program, University of California, San Diego, 9500 Gilman Drive, La Jolla, CA 92093, 3Renaissance Computing Institute, University of North Carolina at Chapel Hill, NC 27517, 4Joint Center for Structural Genomics, Bioinformatics Core, University of California at San Diego, La Jolla, CA 92093 and 5Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, 9500 Gilman Drive, Mailcode 0743, La Jolla, CA 92093-0743 USA","institution_ids":["https://openalex.org/I36258959","https://openalex.org/I181653535","https://openalex.org/I114027177","https://openalex.org/I4210091204"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5075833022","display_name":"Philip E. Bourne","orcid":"https://orcid.org/0000-0002-7618-7292"},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California, San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]},{"id":"https://openalex.org/I4210091204","display_name":"Joint Center for Structural Genomics","ror":"https://ror.org/00exr1241","country_code":"US","type":"other","lineage":["https://openalex.org/I4210091204"]},{"id":"https://openalex.org/I181653535","display_name":"San Diego Supercomputer Center","ror":"https://ror.org/04mg3nk07","country_code":"US","type":"facility","lineage":["https://openalex.org/I181653535","https://openalex.org/I36258959"]},{"id":"https://openalex.org/I114027177","display_name":"University of North Carolina at Chapel Hill","ror":"https://ror.org/0130frc33","country_code":"US","type":"education","lineage":["https://openalex.org/I114027177"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Philip E. Bourne","raw_affiliation_strings":["1 San Diego Supercomputer Center, University of California San Diego, 9500 Gilman Drive, Mailcode 0505 La Jolla, CA 92093-0505, 2Bioinformatics Program, University of California, San Diego, 9500 Gilman Drive, La Jolla, CA 92093, 3Renaissance Computing Institute, University of North Carolina at Chapel Hill, NC 27517, 4Joint Center for Structural Genomics, Bioinformatics Core, University of California at San Diego, La Jolla, CA 92093 and 5Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, 9500 Gilman Drive, Mailcode 0743, La Jolla, CA 92093-0743 USA"],"affiliations":[{"raw_affiliation_string":"1 San Diego Supercomputer Center, University of California San Diego, 9500 Gilman Drive, Mailcode 0505 La Jolla, CA 92093-0505, 2Bioinformatics Program, University of California, San Diego, 9500 Gilman Drive, La Jolla, CA 92093, 3Renaissance Computing Institute, University of North Carolina at Chapel Hill, NC 27517, 4Joint Center for Structural Genomics, Bioinformatics Core, University of California at San Diego, La Jolla, CA 92093 and 5Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, 9500 Gilman Drive, Mailcode 0743, La Jolla, CA 92093-0743 USA","institution_ids":["https://openalex.org/I36258959","https://openalex.org/I181653535","https://openalex.org/I114027177","https://openalex.org/I4210091204"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5077634829"],"corresponding_institution_ids":["https://openalex.org/I114027177","https://openalex.org/I181653535","https://openalex.org/I36258959","https://openalex.org/I4210091204"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":5.5584,"has_fulltext":true,"cited_by_count":198,"citation_normalized_percentile":{"value":0.96925242,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":"26","issue":"23","first_page":"2983","last_page":"2985"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12827","display_name":"Biochemical and Molecular Research","score":0.9921000003814697,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/protein-data-bank","display_name":"Protein Data Bank (RCSB PDB)","score":0.9553960561752319},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6344006657600403},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4257337152957916},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.38554883003234863},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3315795361995697},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.322781503200531},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2044808566570282},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.14664894342422485},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.047724783420562744}],"concepts":[{"id":"https://openalex.org/C65556437","wikidata":"https://www.wikidata.org/wiki/Q766195","display_name":"Protein Data Bank (RCSB PDB)","level":2,"score":0.9553960561752319},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6344006657600403},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4257337152957916},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.38554883003234863},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3315795361995697},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.322781503200531},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2044808566570282},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.14664894342422485},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.047724783420562744}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D040681","descriptor_name":"Structural Homology, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D040681","descriptor_name":"Structural Homology, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D040681","descriptor_name":"Structural Homology, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/btq572","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq572","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/23/2983/48850922/bioinformatics_26_23_2983.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:20937596","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20937596","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:ark:/13030/qt7r15330f","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:escholarship.org/ark:/13030/qt7r15330f","is_oa":true,"landing_page_url":"https://escholarship.org/uc/item/7r15330f","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics (Oxford, England), vol 26, iss 23","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:3003546","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3003546","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btq572","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq572","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/23/2983/48850922/bioinformatics_26_23_2983.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","score":0.4300000071525574,"id":"https://metadata.un.org/sdg/9"},{"display_name":"Partnerships for the goals","score":0.4000000059604645,"id":"https://metadata.un.org/sdg/17"}],"awards":[{"id":"https://openalex.org/G2276489800","display_name":"PDB Management by the Research Collaboratory for Structural Bioinformatics","funder_award_id":"0829586","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7035348794","display_name":"CI-Team Implementation Project:    Embedded Immersive Engagement for Cyberinfrastructure","funder_award_id":"0753335","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G8292114156","display_name":null,"funder_award_id":"DBI 0829586","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320306084","display_name":"U.S. Department of Energy","ror":"https://ror.org/01bj3aw27"},{"id":"https://openalex.org/F4320332603","display_name":"University of California, San Diego","ror":"https://ror.org/0168r3w48"},{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"},{"id":"https://openalex.org/F4320337357","display_name":"National Institute of Diabetes and Digestive and Kidney Diseases","ror":"https://ror.org/00adh9b73"},{"id":"https://openalex.org/F4320337372","display_name":"U.S. National Library of Medicine","ror":"https://ror.org/0060t0j89"},{"id":"https://openalex.org/F4320337398","display_name":"Division of Biological Infrastructure","ror":"https://ror.org/04qn9mx93"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2134815007.pdf","grobid_xml":"https://content.openalex.org/works/W2134815007.grobid-xml"},"referenced_works_count":21,"referenced_works":["https://openalex.org/W1965907701","https://openalex.org/W1992558926","https://openalex.org/W2018053002","https://openalex.org/W2022058405","https://openalex.org/W2063627598","https://openalex.org/W2067868112","https://openalex.org/W2072603644","https://openalex.org/W2074231493","https://openalex.org/W2087064593","https://openalex.org/W2089085945","https://openalex.org/W2097642323","https://openalex.org/W2098125835","https://openalex.org/W2100827887","https://openalex.org/W2102245393","https://openalex.org/W2125062378","https://openalex.org/W2125728871","https://openalex.org/W2126016150","https://openalex.org/W2128653811","https://openalex.org/W2130479394","https://openalex.org/W2152326664","https://openalex.org/W2152333180"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2090630809","https://openalex.org/W2153650863","https://openalex.org/W4246050813","https://openalex.org/W4253991465","https://openalex.org/W2298319713","https://openalex.org/W4387804157","https://openalex.org/W3207853523","https://openalex.org/W3168273531","https://openalex.org/W2589205199"],"abstract_inverted_index":{"andreas@sdsc.edu;":[0],"pbourne@ucsd.edu.":[1]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":8},{"year":2023,"cited_by_count":12},{"year":2022,"cited_by_count":9},{"year":2021,"cited_by_count":7},{"year":2020,"cited_by_count":15},{"year":2019,"cited_by_count":17},{"year":2018,"cited_by_count":19},{"year":2017,"cited_by_count":13},{"year":2016,"cited_by_count":20},{"year":2015,"cited_by_count":16},{"year":2014,"cited_by_count":21},{"year":2013,"cited_by_count":19},{"year":2012,"cited_by_count":9}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
