{"id":"https://openalex.org/W2166542841","doi":"https://doi.org/10.1093/bioinformatics/btq562","title":"GeneMANIA Cytoscape plugin: fast gene function predictions on the desktop","display_name":"GeneMANIA Cytoscape plugin: fast gene function predictions on the desktop","publication_year":2010,"publication_date":"2010-10-05","ids":{"openalex":"https://openalex.org/W2166542841","doi":"https://doi.org/10.1093/bioinformatics/btq562","mag":"2166542841","pmid":"https://pubmed.ncbi.nlm.nih.gov/20926419"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btq562","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq562","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/22/2927/48852457/bioinformatics_26_22_2927.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/26/22/2927/48852457/bioinformatics_26_22_2927.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5070242027","display_name":"Jason Montojo","orcid":null},"institutions":[{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"J. Montojo","raw_affiliation_strings":["Banting and Best Department of Medical Research and Departments of Molecular Genetics and Computer Science, The Donnelly Centre, University of Toronto, 160 College Street, Toronto, ON, M5S 3E1, Canada"],"affiliations":[{"raw_affiliation_string":"Banting and Best Department of Medical Research and Departments of Molecular Genetics and Computer Science, The Donnelly Centre, University of Toronto, 160 College Street, Toronto, ON, M5S 3E1, Canada","institution_ids":["https://openalex.org/I185261750"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084666204","display_name":"Khalid Zuberi","orcid":null},"institutions":[{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"K. Zuberi","raw_affiliation_strings":["Banting and Best Department of Medical Research and Departments of Molecular Genetics and Computer Science, The Donnelly Centre, University of Toronto, 160 College Street, Toronto, ON, M5S 3E1, Canada"],"affiliations":[{"raw_affiliation_string":"Banting and Best Department of Medical Research and Departments of Molecular Genetics and Computer Science, The Donnelly Centre, University of Toronto, 160 College Street, Toronto, ON, M5S 3E1, Canada","institution_ids":["https://openalex.org/I185261750"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023279093","display_name":"Harold Rodriguez","orcid":null},"institutions":[{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"H. Rodriguez","raw_affiliation_strings":["Banting and Best Department of Medical Research and Departments of Molecular Genetics and Computer Science, The Donnelly Centre, University of Toronto, 160 College Street, Toronto, ON, M5S 3E1, Canada"],"affiliations":[{"raw_affiliation_string":"Banting and Best Department of Medical Research and Departments of Molecular Genetics and Computer Science, The Donnelly Centre, University of Toronto, 160 College Street, Toronto, ON, M5S 3E1, Canada","institution_ids":["https://openalex.org/I185261750"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088951552","display_name":"Farzana Kazi","orcid":null},"institutions":[{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"F. Kazi","raw_affiliation_strings":["Banting and Best Department of Medical Research and Departments of Molecular Genetics and Computer Science, The Donnelly Centre, University of Toronto, 160 College Street, Toronto, ON, M5S 3E1, Canada"],"affiliations":[{"raw_affiliation_string":"Banting and Best Department of Medical Research and Departments of Molecular Genetics and Computer Science, The Donnelly Centre, University of Toronto, 160 College Street, Toronto, ON, M5S 3E1, Canada","institution_ids":["https://openalex.org/I185261750"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043244932","display_name":"George Wright","orcid":"https://orcid.org/0000-0002-7089-1203"},"institutions":[{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"G. Wright","raw_affiliation_strings":["Banting and Best Department of Medical Research and Departments of Molecular Genetics and Computer Science, The Donnelly Centre, University of Toronto, 160 College Street, Toronto, ON, M5S 3E1, Canada"],"affiliations":[{"raw_affiliation_string":"Banting and Best Department of Medical Research and Departments of Molecular Genetics and Computer Science, The Donnelly Centre, University of Toronto, 160 College Street, Toronto, ON, M5S 3E1, Canada","institution_ids":["https://openalex.org/I185261750"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113480290","display_name":"Sylva L. Donaldson","orcid":null},"institutions":[{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"S. L. Donaldson","raw_affiliation_strings":["Banting and Best Department of Medical Research and Departments of Molecular Genetics and Computer Science, The Donnelly Centre, University of Toronto, 160 College Street, Toronto, ON, M5S 3E1, Canada"],"affiliations":[{"raw_affiliation_string":"Banting and Best Department of Medical Research and Departments of Molecular Genetics and Computer Science, The Donnelly Centre, University of Toronto, 160 College Street, Toronto, ON, M5S 3E1, Canada","institution_ids":["https://openalex.org/I185261750"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035010657","display_name":"Quaid Morris","orcid":"https://orcid.org/0000-0002-2760-6999"},"institutions":[{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Q. Morris","raw_affiliation_strings":["Banting and Best Department of Medical Research and Departments of Molecular Genetics and Computer Science, The Donnelly Centre, University of Toronto, 160 College Street, Toronto, ON, M5S 3E1, Canada"],"affiliations":[{"raw_affiliation_string":"Banting and Best Department of Medical Research and Departments of Molecular Genetics and Computer Science, The Donnelly Centre, University of Toronto, 160 College Street, Toronto, ON, M5S 3E1, Canada","institution_ids":["https://openalex.org/I185261750"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5010789029","display_name":"Gary D. Bader","orcid":"https://orcid.org/0000-0003-0185-8861"},"institutions":[{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"G. D. Bader","raw_affiliation_strings":["Banting and Best Department of Medical Research and Departments of Molecular Genetics and Computer Science, The Donnelly Centre, University of Toronto, 160 College Street, Toronto, ON, M5S 3E1, Canada"],"affiliations":[{"raw_affiliation_string":"Banting and Best Department of Medical Research and Departments of Molecular Genetics and Computer Science, The Donnelly Centre, University of Toronto, 160 College Street, Toronto, ON, M5S 3E1, Canada","institution_ids":["https://openalex.org/I185261750"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5070242027"],"corresponding_institution_ids":["https://openalex.org/I185261750"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":5.6923,"has_fulltext":true,"cited_by_count":648,"citation_normalized_percentile":{"value":0.96885051,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"26","issue":"22","first_page":"2927","last_page":"2928"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9965999722480774,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9954000115394592,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/plug-in","display_name":"Plug-in","score":0.9222933053970337},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7228716015815735},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.6358159780502319},{"id":"https://openalex.org/keywords/complement","display_name":"Complement (music)","score":0.6106366515159607},{"id":"https://openalex.org/keywords/java","display_name":"Java","score":0.6061251163482666},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5630216002464294},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.2678771913051605},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.2628191113471985},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.25622469186782837},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.0706937313079834}],"concepts":[{"id":"https://openalex.org/C4924752","wikidata":"https://www.wikidata.org/wiki/Q184148","display_name":"Plug-in","level":2,"score":0.9222933053970337},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7228716015815735},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.6358159780502319},{"id":"https://openalex.org/C112313634","wikidata":"https://www.wikidata.org/wiki/Q7886648","display_name":"Complement (music)","level":5,"score":0.6106366515159607},{"id":"https://openalex.org/C548217200","wikidata":"https://www.wikidata.org/wiki/Q251","display_name":"Java","level":2,"score":0.6061251163482666},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5630216002464294},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.2678771913051605},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.2628191113471985},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.25622469186782837},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0706937313079834},{"id":"https://openalex.org/C188082640","wikidata":"https://www.wikidata.org/wiki/Q1780899","display_name":"Complementation","level":4,"score":0.0},{"id":"https://openalex.org/C127716648","wikidata":"https://www.wikidata.org/wiki/Q104053","display_name":"Phenotype","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btq562","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq562","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/22/2927/48852457/bioinformatics_26_22_2927.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:20926419","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20926419","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:2971582","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2971582","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btq562","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq562","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/22/2927/48852457/bioinformatics_26_22_2927.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320310787","display_name":"Genome Canada","ror":"https://ror.org/029s29983"},{"id":"https://openalex.org/F4320314024","display_name":"Ontario Genomics","ror":null},{"id":"https://openalex.org/F4320319905","display_name":"Ontario Genomics Institute","ror":"https://ror.org/00c68jz96"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2166542841.pdf","grobid_xml":"https://content.openalex.org/works/W2166542841.grobid-xml"},"referenced_works_count":9,"referenced_works":["https://openalex.org/W1985213868","https://openalex.org/W2120688086","https://openalex.org/W2122723516","https://openalex.org/W2124649441","https://openalex.org/W2144014661","https://openalex.org/W2147461734","https://openalex.org/W2159675211","https://openalex.org/W2168546553","https://openalex.org/W2917431650"],"related_works":["https://openalex.org/W4287378204","https://openalex.org/W2545422590","https://openalex.org/W4240705470","https://openalex.org/W2945311252","https://openalex.org/W2981957539","https://openalex.org/W4295210903","https://openalex.org/W1494668222","https://openalex.org/W631546281","https://openalex.org/W2924735795","https://openalex.org/W2383918176"],"abstract_inverted_index":{"The":[0],"GeneMANIA":[1],"Cytoscape":[2],"plugin":[3],"is":[4,9],"implemented":[5],"in":[6],"Java":[7],"and":[8],"freely":[10],"available":[11],"at":[12],"http://www.genemania.org/plugin/.":[13]},"counts_by_year":[{"year":2026,"cited_by_count":6},{"year":2025,"cited_by_count":43},{"year":2024,"cited_by_count":37},{"year":2023,"cited_by_count":53},{"year":2022,"cited_by_count":36},{"year":2021,"cited_by_count":75},{"year":2020,"cited_by_count":57},{"year":2019,"cited_by_count":64},{"year":2018,"cited_by_count":56},{"year":2017,"cited_by_count":50},{"year":2016,"cited_by_count":56},{"year":2015,"cited_by_count":32},{"year":2014,"cited_by_count":41},{"year":2013,"cited_by_count":23},{"year":2012,"cited_by_count":14}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}