{"id":"https://openalex.org/W2154439800","doi":"https://doi.org/10.1093/bioinformatics/btq555","title":"Graph-based Word Sense Disambiguation of biomedical documents","display_name":"Graph-based Word Sense Disambiguation of biomedical documents","publication_year":2010,"publication_date":"2010-10-07","ids":{"openalex":"https://openalex.org/W2154439800","doi":"https://doi.org/10.1093/bioinformatics/btq555","mag":"2154439800","pmid":"https://pubmed.ncbi.nlm.nih.gov/20934991"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btq555","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq555","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/22/2889/48852857/bioinformatics_26_22_2889.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/26/22/2889/48852857/bioinformatics_26_22_2889.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5047151336","display_name":"Eneko Agirre","orcid":"https://orcid.org/0000-0002-0195-4899"},"institutions":[{"id":"https://openalex.org/I169108374","display_name":"University of the Basque Country","ror":"https://ror.org/000xsnr85","country_code":"ES","type":"education","lineage":["https://openalex.org/I169108374"]},{"id":"https://openalex.org/I91136226","display_name":"University of Sheffield","ror":"https://ror.org/05krs5044","country_code":"GB","type":"education","lineage":["https://openalex.org/I91136226"]}],"countries":["ES","GB"],"is_corresponding":false,"raw_author_name":"Eneko Agirre","raw_affiliation_strings":["1 IXA NLP Group, University of the Basque Country, Donostia, Basque Country and 2Department of Computer Science, Sheffield University, 211 Portobello, Sheffield S1 4DP, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 IXA NLP Group, University of the Basque Country, Donostia, Basque Country and 2Department of Computer Science, Sheffield University, 211 Portobello, Sheffield S1 4DP, UK","institution_ids":["https://openalex.org/I169108374","https://openalex.org/I91136226"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053230169","display_name":"Aitor Soroa","orcid":"https://orcid.org/0000-0001-8573-2654"},"institutions":[{"id":"https://openalex.org/I169108374","display_name":"University of the Basque Country","ror":"https://ror.org/000xsnr85","country_code":"ES","type":"education","lineage":["https://openalex.org/I169108374"]},{"id":"https://openalex.org/I91136226","display_name":"University of Sheffield","ror":"https://ror.org/05krs5044","country_code":"GB","type":"education","lineage":["https://openalex.org/I91136226"]}],"countries":["ES","GB"],"is_corresponding":false,"raw_author_name":"Aitor Soroa","raw_affiliation_strings":["1 IXA NLP Group, University of the Basque Country, Donostia, Basque Country and 2Department of Computer Science, Sheffield University, 211 Portobello, Sheffield S1 4DP, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 IXA NLP Group, University of the Basque Country, Donostia, Basque Country and 2Department of Computer Science, Sheffield University, 211 Portobello, Sheffield S1 4DP, UK","institution_ids":["https://openalex.org/I169108374","https://openalex.org/I91136226"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5049768940","display_name":"Mark Stevenson","orcid":"https://orcid.org/0000-0003-3166-5876"},"institutions":[{"id":"https://openalex.org/I169108374","display_name":"University of the Basque Country","ror":"https://ror.org/000xsnr85","country_code":"ES","type":"education","lineage":["https://openalex.org/I169108374"]},{"id":"https://openalex.org/I91136226","display_name":"University of Sheffield","ror":"https://ror.org/05krs5044","country_code":"GB","type":"education","lineage":["https://openalex.org/I91136226"]}],"countries":["ES","GB"],"is_corresponding":true,"raw_author_name":"Mark Stevenson","raw_affiliation_strings":["1 IXA NLP Group, University of the Basque Country, Donostia, Basque Country and 2Department of Computer Science, Sheffield University, 211 Portobello, Sheffield S1 4DP, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"1 IXA NLP Group, University of the Basque Country, Donostia, Basque Country and 2Department of Computer Science, Sheffield University, 211 Portobello, Sheffield S1 4DP, UK","institution_ids":["https://openalex.org/I169108374","https://openalex.org/I91136226"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5049768940"],"corresponding_institution_ids":["https://openalex.org/I169108374","https://openalex.org/I91136226"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":3.6246,"has_fulltext":false,"cited_by_count":74,"citation_normalized_percentile":{"value":0.93671969,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"26","issue":"22","first_page":"2889","last_page":"2896"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.7141000032424927,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.7141000032424927,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.15970000624656677,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.04430000111460686,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7480815649032593},{"id":"https://openalex.org/keywords/word-sense-disambiguation","display_name":"Word-sense disambiguation","score":0.7345675230026245},{"id":"https://openalex.org/keywords/word","display_name":"Word (group theory)","score":0.6776698231697083},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.652323842048645},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5380994081497192},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.5129403471946716},{"id":"https://openalex.org/keywords/semeval","display_name":"SemEval","score":0.4962826371192932},{"id":"https://openalex.org/keywords/linguistics","display_name":"Linguistics","score":0.2990766167640686},{"id":"https://openalex.org/keywords/wordnet","display_name":"WordNet","score":0.1206902265548706},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.1161017119884491}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7480815649032593},{"id":"https://openalex.org/C51646954","wikidata":"https://www.wikidata.org/wiki/Q48522","display_name":"Word-sense disambiguation","level":3,"score":0.7345675230026245},{"id":"https://openalex.org/C90805587","wikidata":"https://www.wikidata.org/wiki/Q10944557","display_name":"Word (group theory)","level":2,"score":0.6776698231697083},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.652323842048645},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5380994081497192},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.5129403471946716},{"id":"https://openalex.org/C44572571","wikidata":"https://www.wikidata.org/wiki/Q7448970","display_name":"SemEval","level":3,"score":0.4962826371192932},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.2990766167640686},{"id":"https://openalex.org/C157659113","wikidata":"https://www.wikidata.org/wiki/Q533822","display_name":"WordNet","level":2,"score":0.1206902265548706},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.1161017119884491},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017432","descriptor_name":"Unified Medical Language System","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017432","descriptor_name":"Unified Medical Language System","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017432","descriptor_name":"Unified Medical Language System","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btq555","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq555","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/22/2889/48852857/bioinformatics_26_22_2889.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:20934991","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20934991","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btq555","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq555","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/22/2889/48852857/bioinformatics_26_22_2889.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education","score":0.7099999785423279}],"awards":[{"id":"https://openalex.org/G3601844111","display_name":null,"funder_award_id":"EP/D069548/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G4370650324","display_name":"Providing Lexical Adaptation Techniques for Language Processing","funder_award_id":"EP/D069548/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320334627","display_name":"Engineering and Physical Sciences Research Council","ror":"https://ror.org/0439y7842"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":55,"referenced_works":["https://openalex.org/W135437175","https://openalex.org/W323540269","https://openalex.org/W1034019924","https://openalex.org/W1505302577","https://openalex.org/W1532254950","https://openalex.org/W1550258693","https://openalex.org/W1555354714","https://openalex.org/W1563163909","https://openalex.org/W1593045043","https://openalex.org/W1594074324","https://openalex.org/W1596112425","https://openalex.org/W1637593105","https://openalex.org/W1756650108","https://openalex.org/W1886186693","https://openalex.org/W1972938566","https://openalex.org/W1984293430","https://openalex.org/W1985104050","https://openalex.org/W1993068388","https://openalex.org/W2016522586","https://openalex.org/W2030110726","https://openalex.org/W2052999080","https://openalex.org/W2055518963","https://openalex.org/W2066636486","https://openalex.org/W2101171038","https://openalex.org/W2110189854","https://openalex.org/W2120719430","https://openalex.org/W2123635471","https://openalex.org/W2128809169","https://openalex.org/W2130160813","https://openalex.org/W2139183784","https://openalex.org/W2157054705","https://openalex.org/W2157063199","https://openalex.org/W2170227202","https://openalex.org/W2170344111","https://openalex.org/W2270018644","https://openalex.org/W2295240344","https://openalex.org/W2436001372","https://openalex.org/W2600716915","https://openalex.org/W2796084947","https://openalex.org/W2912814679","https://openalex.org/W4248219478","https://openalex.org/W6605500565","https://openalex.org/W6629988757","https://openalex.org/W6631602457","https://openalex.org/W6632766574","https://openalex.org/W6633622947","https://openalex.org/W6635388145","https://openalex.org/W6635456232","https://openalex.org/W6636672007","https://openalex.org/W6639657921","https://openalex.org/W6676319780","https://openalex.org/W6679051890","https://openalex.org/W6680534037","https://openalex.org/W6683677673","https://openalex.org/W6685042037"],"related_works":["https://openalex.org/W2101293500","https://openalex.org/W2384058382","https://openalex.org/W2000205775","https://openalex.org/W2124313972","https://openalex.org/W2251529656","https://openalex.org/W2465261327","https://openalex.org/W2140343536","https://openalex.org/W2117805747","https://openalex.org/W4287641341","https://openalex.org/W2188275805"],"abstract_inverted_index":{"MOTIVATION:":[0],"Word":[1],"Sense":[2],"Disambiguation":[3],"(WSD),":[4],"automatically":[5],"identifying":[6],"the":[7,30,51,78,81,89,115,127],"meaning":[8],"of":[9,18,48,118],"ambiguous":[10],"words":[11],"in":[12,29],"context,":[13],"is":[14,35,59,69,97,141],"an":[15],"important":[16],"stage":[17],"text":[19],"processing.":[20],"This":[21],"article":[22],"presents":[23],"a":[24,62,131],"graph-based":[25],"approach":[26],"to":[27,71,125],"WSD":[28,95,139],"biomedical":[31],"domain.":[32],"The":[33,94,105],"method":[34],"unsupervised":[36],"and":[37,101,109,122],"does":[38],"not":[39],"require":[40],"any":[41],"labeled":[42],"training":[43],"data.":[44],"It":[45],"makes":[46],"use":[47],"knowledge":[49],"from":[50,103,114,143],"Unified":[52],"Medical":[53],"Language":[54],"System":[55],"(UMLS)":[56],"Metathesaurus":[57,91],"which":[58],"represented":[60],"as":[61],"graph.":[63],"A":[64],"state-of-the-art":[65],"algorithm,":[66],"Personalized":[67],"PageRank,":[68],"used":[70,136],"perform":[72],"WSD.":[73],"RESULTS:":[74],"When":[75],"evaluated":[76],"on":[77,88],"NLM-WSD":[79,110,128],"dataset,":[80],"algorithm":[82],"outperforms":[83],"other":[84],"methods":[85],"that":[86,133],"rely":[87],"UMLS":[90],"alone.":[92],"AVAILABILITY:":[93],"system":[96,140],"open":[98,146],"source":[99,147],"licensed":[100],"available":[102,113,142],"http://ixa2.si.ehu.es/ukb/.":[104],"UMLS,":[106],"MetaMap":[107],"program":[108],"corpus":[111,129],"are":[112],"National":[116],"Library":[117],"Medicine":[119],"https://www.nlm.nih.gov/research/umls/,":[120],"http://mmtx.nlm.nih.gov":[121],"http://wsd.nlm.nih.gov.":[123],"Software":[124],"convert":[126],"into":[130],"format":[132],"can":[134],"be":[135],"by":[137],"our":[138],"http://www.dcs.shef.ac.uk/\u223cmarks/biomedical_wsd":[144],"under":[145],"license.":[148]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":3},{"year":2018,"cited_by_count":6},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":11},{"year":2015,"cited_by_count":7},{"year":2014,"cited_by_count":10},{"year":2013,"cited_by_count":9},{"year":2012,"cited_by_count":13}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
