{"id":"https://openalex.org/W2108334394","doi":"https://doi.org/10.1093/bioinformatics/btq535","title":"SpotXplore: a Cytoscape plugin for visual exploration of hotspot expression in gene regulatory networks","display_name":"SpotXplore: a Cytoscape plugin for visual exploration of hotspot expression in gene regulatory networks","publication_year":2010,"publication_date":"2010-09-21","ids":{"openalex":"https://openalex.org/W2108334394","doi":"https://doi.org/10.1093/bioinformatics/btq535","mag":"2108334394","pmid":"https://pubmed.ncbi.nlm.nih.gov/20861033"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btq535","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq535","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/22/2922/48852310/bioinformatics_26_22_2922.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/26/22/2922/48852310/bioinformatics_26_22_2922.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5039489539","display_name":"Michel A. Westenberg","orcid":"https://orcid.org/0000-0003-4355-7805"},"institutions":[{"id":"https://openalex.org/I169381384","display_name":"University of Groningen","ror":"https://ror.org/012p63287","country_code":"NL","type":"education","lineage":["https://openalex.org/I169381384"]},{"id":"https://openalex.org/I2802934949","display_name":"Radboud University Medical Center","ror":"https://ror.org/05wg1m734","country_code":"NL","type":"funder","lineage":["https://openalex.org/I2802934949"]},{"id":"https://openalex.org/I83019370","display_name":"Eindhoven University of Technology","ror":"https://ror.org/02c2kyt77","country_code":"NL","type":"education","lineage":["https://openalex.org/I83019370"]},{"id":"https://openalex.org/I2801582894","display_name":"Netherlands Bioinformatics Centre","ror":"https://ror.org/01r0k6965","country_code":"NL","type":"nonprofit","lineage":["https://openalex.org/I2801582894"]},{"id":"https://openalex.org/I145872427","display_name":"Radboud University Nijmegen","ror":"https://ror.org/016xsfp80","country_code":"NL","type":"education","lineage":["https://openalex.org/I145872427"]},{"id":"https://openalex.org/I4210109520","display_name":"TiFN","ror":"https://ror.org/0183vre95","country_code":"NL","type":"education","lineage":["https://openalex.org/I4210109520"]}],"countries":["NL"],"is_corresponding":true,"raw_author_name":"Michel A. Westenberg","raw_affiliation_strings":["1 Department of Mathematics and Computer Science, Eindhoven University of Technology, Eindhoven, 2Johann Bernoulli Institute for Mathematics and Computer Science, University of Groningen, Groningen, 3Department of Genetics, University of Groningen, Haren, 4Center for Molecular and Biomolecular Informatics, Radboud University Nijmegen Medical Centre, Nijmegen, 5 Kluyver Centre for Genomics of Industrial Fermentation, NIZO food research, Ede, 6TI Food and Nutrition, Wageningen and 7Netherlands Bioinformatics Centre, Nijmegen, The Netherlands"],"affiliations":[{"raw_affiliation_string":"1 Department of Mathematics and Computer Science, Eindhoven University of Technology, Eindhoven, 2Johann Bernoulli Institute for Mathematics and Computer Science, University of Groningen, Groningen, 3Department of Genetics, University of Groningen, Haren, 4Center for Molecular and Biomolecular Informatics, Radboud University Nijmegen Medical Centre, Nijmegen, 5 Kluyver Centre for Genomics of Industrial Fermentation, NIZO food research, Ede, 6TI Food and Nutrition, Wageningen and 7Netherlands Bioinformatics Centre, Nijmegen, The Netherlands","institution_ids":["https://openalex.org/I2802934949","https://openalex.org/I169381384","https://openalex.org/I83019370","https://openalex.org/I145872427","https://openalex.org/I2801582894","https://openalex.org/I4210109520"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073784823","display_name":"Jos B. T. M. Roerdink","orcid":"https://orcid.org/0000-0003-1092-9633"},"institutions":[{"id":"https://openalex.org/I83019370","display_name":"Eindhoven University of Technology","ror":"https://ror.org/02c2kyt77","country_code":"NL","type":"education","lineage":["https://openalex.org/I83019370"]},{"id":"https://openalex.org/I2801582894","display_name":"Netherlands Bioinformatics Centre","ror":"https://ror.org/01r0k6965","country_code":"NL","type":"nonprofit","lineage":["https://openalex.org/I2801582894"]},{"id":"https://openalex.org/I2802934949","display_name":"Radboud University Medical Center","ror":"https://ror.org/05wg1m734","country_code":"NL","type":"funder","lineage":["https://openalex.org/I2802934949"]},{"id":"https://openalex.org/I4210109520","display_name":"TiFN","ror":"https://ror.org/0183vre95","country_code":"NL","type":"education","lineage":["https://openalex.org/I4210109520"]},{"id":"https://openalex.org/I169381384","display_name":"University of Groningen","ror":"https://ror.org/012p63287","country_code":"NL","type":"education","lineage":["https://openalex.org/I169381384"]},{"id":"https://openalex.org/I145872427","display_name":"Radboud University Nijmegen","ror":"https://ror.org/016xsfp80","country_code":"NL","type":"education","lineage":["https://openalex.org/I145872427"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Jos B.T.M. Roerdink","raw_affiliation_strings":["1 Department of Mathematics and Computer Science, Eindhoven University of Technology, Eindhoven, 2Johann Bernoulli Institute for Mathematics and Computer Science, University of Groningen, Groningen, 3Department of Genetics, University of Groningen, Haren, 4Center for Molecular and Biomolecular Informatics, Radboud University Nijmegen Medical Centre, Nijmegen, 5 Kluyver Centre for Genomics of Industrial Fermentation, NIZO food research, Ede, 6TI Food and Nutrition, Wageningen and 7Netherlands Bioinformatics Centre, Nijmegen, The Netherlands"],"affiliations":[{"raw_affiliation_string":"1 Department of Mathematics and Computer Science, Eindhoven University of Technology, Eindhoven, 2Johann Bernoulli Institute for Mathematics and Computer Science, University of Groningen, Groningen, 3Department of Genetics, University of Groningen, Haren, 4Center for Molecular and Biomolecular Informatics, Radboud University Nijmegen Medical Centre, Nijmegen, 5 Kluyver Centre for Genomics of Industrial Fermentation, NIZO food research, Ede, 6TI Food and Nutrition, Wageningen and 7Netherlands Bioinformatics Centre, Nijmegen, The Netherlands","institution_ids":["https://openalex.org/I2802934949","https://openalex.org/I169381384","https://openalex.org/I83019370","https://openalex.org/I145872427","https://openalex.org/I2801582894","https://openalex.org/I4210109520"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017781414","display_name":"Oscar P. Kuipers","orcid":"https://orcid.org/0000-0001-5596-7735"},"institutions":[{"id":"https://openalex.org/I169381384","display_name":"University of Groningen","ror":"https://ror.org/012p63287","country_code":"NL","type":"education","lineage":["https://openalex.org/I169381384"]},{"id":"https://openalex.org/I145872427","display_name":"Radboud University Nijmegen","ror":"https://ror.org/016xsfp80","country_code":"NL","type":"education","lineage":["https://openalex.org/I145872427"]},{"id":"https://openalex.org/I83019370","display_name":"Eindhoven University of Technology","ror":"https://ror.org/02c2kyt77","country_code":"NL","type":"education","lineage":["https://openalex.org/I83019370"]},{"id":"https://openalex.org/I4210109520","display_name":"TiFN","ror":"https://ror.org/0183vre95","country_code":"NL","type":"education","lineage":["https://openalex.org/I4210109520"]},{"id":"https://openalex.org/I2802934949","display_name":"Radboud University Medical Center","ror":"https://ror.org/05wg1m734","country_code":"NL","type":"funder","lineage":["https://openalex.org/I2802934949"]},{"id":"https://openalex.org/I2801582894","display_name":"Netherlands Bioinformatics Centre","ror":"https://ror.org/01r0k6965","country_code":"NL","type":"nonprofit","lineage":["https://openalex.org/I2801582894"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Oscar P. Kuipers","raw_affiliation_strings":["1 Department of Mathematics and Computer Science, Eindhoven University of Technology, Eindhoven, 2Johann Bernoulli Institute for Mathematics and Computer Science, University of Groningen, Groningen, 3Department of Genetics, University of Groningen, Haren, 4Center for Molecular and Biomolecular Informatics, Radboud University Nijmegen Medical Centre, Nijmegen, 5 Kluyver Centre for Genomics of Industrial Fermentation, NIZO food research, Ede, 6TI Food and Nutrition, Wageningen and 7Netherlands Bioinformatics Centre, Nijmegen, The Netherlands"],"affiliations":[{"raw_affiliation_string":"1 Department of Mathematics and Computer Science, Eindhoven University of Technology, Eindhoven, 2Johann Bernoulli Institute for Mathematics and Computer Science, University of Groningen, Groningen, 3Department of Genetics, University of Groningen, Haren, 4Center for Molecular and Biomolecular Informatics, Radboud University Nijmegen Medical Centre, Nijmegen, 5 Kluyver Centre for Genomics of Industrial Fermentation, NIZO food research, Ede, 6TI Food and Nutrition, Wageningen and 7Netherlands Bioinformatics Centre, Nijmegen, The Netherlands","institution_ids":["https://openalex.org/I2802934949","https://openalex.org/I169381384","https://openalex.org/I83019370","https://openalex.org/I145872427","https://openalex.org/I2801582894","https://openalex.org/I4210109520"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5024324359","display_name":"Sacha A. F. T. van Hijum","orcid":"https://orcid.org/0000-0003-0741-2991"},"institutions":[{"id":"https://openalex.org/I169381384","display_name":"University of Groningen","ror":"https://ror.org/012p63287","country_code":"NL","type":"education","lineage":["https://openalex.org/I169381384"]},{"id":"https://openalex.org/I145872427","display_name":"Radboud University Nijmegen","ror":"https://ror.org/016xsfp80","country_code":"NL","type":"education","lineage":["https://openalex.org/I145872427"]},{"id":"https://openalex.org/I2801582894","display_name":"Netherlands Bioinformatics Centre","ror":"https://ror.org/01r0k6965","country_code":"NL","type":"nonprofit","lineage":["https://openalex.org/I2801582894"]},{"id":"https://openalex.org/I4210109520","display_name":"TiFN","ror":"https://ror.org/0183vre95","country_code":"NL","type":"education","lineage":["https://openalex.org/I4210109520"]},{"id":"https://openalex.org/I83019370","display_name":"Eindhoven University of Technology","ror":"https://ror.org/02c2kyt77","country_code":"NL","type":"education","lineage":["https://openalex.org/I83019370"]},{"id":"https://openalex.org/I2802934949","display_name":"Radboud University Medical Center","ror":"https://ror.org/05wg1m734","country_code":"NL","type":"funder","lineage":["https://openalex.org/I2802934949"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Sacha A.F.T. van Hijum","raw_affiliation_strings":["1 Department of Mathematics and Computer Science, Eindhoven University of Technology, Eindhoven, 2Johann Bernoulli Institute for Mathematics and Computer Science, University of Groningen, Groningen, 3Department of Genetics, University of Groningen, Haren, 4Center for Molecular and Biomolecular Informatics, Radboud University Nijmegen Medical Centre, Nijmegen, 5 Kluyver Centre for Genomics of Industrial Fermentation, NIZO food research, Ede, 6TI Food and Nutrition, Wageningen and 7Netherlands Bioinformatics Centre, Nijmegen, The Netherlands"],"affiliations":[{"raw_affiliation_string":"1 Department of Mathematics and Computer Science, Eindhoven University of Technology, Eindhoven, 2Johann Bernoulli Institute for Mathematics and Computer Science, University of Groningen, Groningen, 3Department of Genetics, University of Groningen, Haren, 4Center for Molecular and Biomolecular Informatics, Radboud University Nijmegen Medical Centre, Nijmegen, 5 Kluyver Centre for Genomics of Industrial Fermentation, NIZO food research, Ede, 6TI Food and Nutrition, Wageningen and 7Netherlands Bioinformatics Centre, Nijmegen, The Netherlands","institution_ids":["https://openalex.org/I2802934949","https://openalex.org/I169381384","https://openalex.org/I83019370","https://openalex.org/I145872427","https://openalex.org/I2801582894","https://openalex.org/I4210109520"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5039489539"],"corresponding_institution_ids":["https://openalex.org/I145872427","https://openalex.org/I169381384","https://openalex.org/I2801582894","https://openalex.org/I2802934949","https://openalex.org/I4210109520","https://openalex.org/I83019370"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.6777,"has_fulltext":true,"cited_by_count":7,"citation_normalized_percentile":{"value":0.69704925,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"26","issue":"22","first_page":"2922","last_page":"2923"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/plug-in","display_name":"Plug-in","score":0.8518490791320801},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.7017759084701538},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5430722236633301},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5351833701133728},{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.5224829316139221},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.5067699551582336},{"id":"https://openalex.org/keywords/hotspot","display_name":"Hotspot (geology)","score":0.48794811964035034},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.40456971526145935},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.3844171166419983},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3203859329223633},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.22530540823936462},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.08934822678565979}],"concepts":[{"id":"https://openalex.org/C4924752","wikidata":"https://www.wikidata.org/wiki/Q184148","display_name":"Plug-in","level":2,"score":0.8518490791320801},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.7017759084701538},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5430722236633301},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5351833701133728},{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.5224829316139221},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5067699551582336},{"id":"https://openalex.org/C146481406","wikidata":"https://www.wikidata.org/wiki/Q105131","display_name":"Hotspot (geology)","level":2,"score":0.48794811964035034},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.40456971526145935},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.3844171166419983},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3203859329223633},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.22530540823936462},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.08934822678565979},{"id":"https://openalex.org/C127313418","wikidata":"https://www.wikidata.org/wiki/Q1069","display_name":"Geology","level":0,"score":0.0},{"id":"https://openalex.org/C8058405","wikidata":"https://www.wikidata.org/wiki/Q46255","display_name":"Geophysics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":8,"locations":[{"id":"doi:10.1093/bioinformatics/btq535","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq535","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/22/2922/48852310/bioinformatics_26_22_2922.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:20861033","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20861033","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pure.rug.nl:publications/cf56fdd2-9651-479e-b363-7db12546e517","is_oa":false,"landing_page_url":"https://research.rug.nl/en/publications/cf56fdd2-9651-479e-b363-7db12546e517","pdf_url":null,"source":{"id":"https://openalex.org/S4306400420","display_name":"University of Groningen research database (University of Groningen / Centre for Information Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I169381384","host_organization_name":"University of Groningen","host_organization_lineage":["https://openalex.org/I169381384"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Westenberg, M A, Roerdink, J B T M, Kuipers, O P & van Hijum, S A F T 2010, 'SpotXplore : A Cytoscape plugin for visual exploration of hotspot expression in gene regulatory networks', Bioinformatics, vol. 26, no. 22, pp. 2922-2923. https://doi.org/10.1093/bioinformatics/btq535","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:pure.tue.nl:openaire_cris_publications/2db286ea-f5fc-4069-9dc0-e7901eef4c1e","is_oa":false,"landing_page_url":"https://research.tue.nl/en/publications/2db286ea-f5fc-4069-9dc0-e7901eef4c1e","pdf_url":null,"source":{"id":"https://openalex.org/S4406922641","display_name":"TU/e Research Portal","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Westenberg, M A, Roerdink, J B T M, Kuipers, O P & Hijum, van, S A F T 2010, 'SpotXplore: a Cytoscape plugin for visual exploration of hotspot expression in gene regulatory networks', Bioinformatics, vol. 26, no. 22, pp. 2922-2923. https://doi.org/10.1093/bioinformatics/btq535","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:pure.rug.nl:openaire/cf56fdd2-9651-479e-b363-7db12546e517","is_oa":true,"landing_page_url":"https://hdl.handle.net/11370/cf56fdd2-9651-479e-b363-7db12546e517","pdf_url":"https://research.rug.nl/files/127073812/btq535.pdf","source":{"id":"https://openalex.org/S4306400420","display_name":"University of Groningen research database (University of Groningen / Centre for Information Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I169381384","host_organization_name":"University of Groningen","host_organization_lineage":["https://openalex.org/I169381384"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Westenberg, M A, Roerdink, J B T M, Kuipers, O P & van Hijum, S A F T 2010, 'SpotXplore : A Cytoscape plugin for visual exploration of hotspot expression in gene regulatory networks', Bioinformatics, vol. 26, no. 22, pp. 2922-2923. https://doi.org/10.1093/bioinformatics/btq535","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:pubmedcentral.nih.gov:2971575","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2971575","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:repository.ubn.ru.nl:2066/89161","is_oa":false,"landing_page_url":"http://hdl.handle.net/2066/89161","pdf_url":null,"source":{"id":"https://openalex.org/S4306401067","display_name":"Radboud Repository (Radboud University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I145872427","host_organization_name":"Radboud University Nijmegen","host_organization_lineage":["https://openalex.org/I145872427"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, 26, 22, pp. 2922-3","raw_type":"Article / Letter to editor"},{"id":"pmh:tue:oai:pure.tue.nl:publications/2db286ea-f5fc-4069-9dc0-e7901eef4c1e","is_oa":false,"landing_page_url":"https://research.tue.nl/nl/publications/2db286ea-f5fc-4069-9dc0-e7901eef4c1e","pdf_url":null,"source":{"id":"https://openalex.org/S4306401843","display_name":"Data Archiving and Networked Services (DANS)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1322597698","host_organization_name":"Royal Netherlands Academy of Arts and Sciences","host_organization_lineage":["https://openalex.org/I1322597698"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, 26(22), 2922 - 2923. Oxford University Press","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btq535","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq535","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/22/2922/48852310/bioinformatics_26_22_2922.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2108334394.pdf","grobid_xml":"https://content.openalex.org/works/W2108334394.grobid-xml"},"referenced_works_count":8,"referenced_works":["https://openalex.org/W2018527742","https://openalex.org/W2070672503","https://openalex.org/W2120842170","https://openalex.org/W2140635350","https://openalex.org/W2148803358","https://openalex.org/W2152664962","https://openalex.org/W2159675211","https://openalex.org/W6682403317"],"related_works":["https://openalex.org/W2009966535","https://openalex.org/W183875134","https://openalex.org/W4225426244","https://openalex.org/W2810320185","https://openalex.org/W1547016179","https://openalex.org/W3111998489","https://openalex.org/W1994539334","https://openalex.org/W2029617325","https://openalex.org/W4241525120","https://openalex.org/W2001119975"],"abstract_inverted_index":{"http://www.win.tue.nl/\u223cmwestenb/spotxplore/.":[0]},"counts_by_year":[{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2013,"cited_by_count":4}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
