{"id":"https://openalex.org/W2167193207","doi":"https://doi.org/10.1093/bioinformatics/btq518","title":"SynBioWave\u2014a real-time communication platform for molecular and synthetic biology","display_name":"SynBioWave\u2014a real-time communication platform for molecular and synthetic biology","publication_year":2010,"publication_date":"2010-09-13","ids":{"openalex":"https://openalex.org/W2167193207","doi":"https://doi.org/10.1093/bioinformatics/btq518","mag":"2167193207","pmid":"https://pubmed.ncbi.nlm.nih.gov/20841324"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btq518","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq518","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/21/2782/48851436/bioinformatics_26_21_2782.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/26/21/2782/48851436/bioinformatics_26_21_2782.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5086244132","display_name":"Paul Staab","orcid":null},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Paul R. Staab","raw_affiliation_strings":["1 Department of Mathematics, 2Department of Biology, University of Freiburg, 3EMBL-CRG Systems Biology program, CRG, Barcelona, Spain, 4Centre for Biological Signalling Studies (BIOSS), 5Institute for Advanced Studies (FRIAS), University of Freiburg and 6Institute for Biochemistry and Biology, University of Potsdam"],"affiliations":[{"raw_affiliation_string":"1 Department of Mathematics, 2Department of Biology, University of Freiburg, 3EMBL-CRG Systems Biology program, CRG, Barcelona, Spain, 4Centre for Biological Signalling Studies (BIOSS), 5Institute for Advanced Studies (FRIAS), University of Freiburg and 6Institute for Biochemistry and Biology, University of Potsdam","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084768765","display_name":"J\u00f6rg Walossek","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"J\u00f6rg Walossek","raw_affiliation_strings":["1 Department of Mathematics, 2Department of Biology, University of Freiburg, 3EMBL-CRG Systems Biology program, CRG, Barcelona, Spain, 4Centre for Biological Signalling Studies (BIOSS), 5Institute for Advanced Studies (FRIAS), University of Freiburg and 6Institute for Biochemistry and Biology, University of Potsdam"],"affiliations":[{"raw_affiliation_string":"1 Department of Mathematics, 2Department of Biology, University of Freiburg, 3EMBL-CRG Systems Biology program, CRG, Barcelona, Spain, 4Centre for Biological Signalling Studies (BIOSS), 5Institute for Advanced Studies (FRIAS), University of Freiburg and 6Institute for Biochemistry and Biology, University of Potsdam","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046323157","display_name":"David Nellessen","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"David Nellessen","raw_affiliation_strings":["1 Department of Mathematics, 2Department of Biology, University of Freiburg, 3EMBL-CRG Systems Biology program, CRG, Barcelona, Spain, 4Centre for Biological Signalling Studies (BIOSS), 5Institute for Advanced Studies (FRIAS), University of Freiburg and 6Institute for Biochemistry and Biology, University of Potsdam"],"affiliations":[{"raw_affiliation_string":"1 Department of Mathematics, 2Department of Biology, University of Freiburg, 3EMBL-CRG Systems Biology program, CRG, Barcelona, Spain, 4Centre for Biological Signalling Studies (BIOSS), 5Institute for Advanced Studies (FRIAS), University of Freiburg and 6Institute for Biochemistry and Biology, University of Potsdam","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037127624","display_name":"Raik Gr\u00fcnberg","orcid":"https://orcid.org/0000-0001-9532-6043"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Raik Gr\u00fcnberg","raw_affiliation_strings":["1 Department of Mathematics, 2Department of Biology, University of Freiburg, 3EMBL-CRG Systems Biology program, CRG, Barcelona, Spain, 4Centre for Biological Signalling Studies (BIOSS), 5Institute for Advanced Studies (FRIAS), University of Freiburg and 6Institute for Biochemistry and Biology, University of Potsdam"],"affiliations":[{"raw_affiliation_string":"1 Department of Mathematics, 2Department of Biology, University of Freiburg, 3EMBL-CRG Systems Biology program, CRG, Barcelona, Spain, 4Centre for Biological Signalling Studies (BIOSS), 5Institute for Advanced Studies (FRIAS), University of Freiburg and 6Institute for Biochemistry and Biology, University of Potsdam","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087515137","display_name":"Katja M. Arndt","orcid":"https://orcid.org/0000-0001-9220-0920"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Katja M. Arndt","raw_affiliation_strings":["1 Department of Mathematics, 2Department of Biology, University of Freiburg, 3EMBL-CRG Systems Biology program, CRG, Barcelona, Spain, 4Centre for Biological Signalling Studies (BIOSS), 5Institute for Advanced Studies (FRIAS), University of Freiburg and 6Institute for Biochemistry and Biology, University of Potsdam"],"affiliations":[{"raw_affiliation_string":"1 Department of Mathematics, 2Department of Biology, University of Freiburg, 3EMBL-CRG Systems Biology program, CRG, Barcelona, Spain, 4Centre for Biological Signalling Studies (BIOSS), 5Institute for Advanced Studies (FRIAS), University of Freiburg and 6Institute for Biochemistry and Biology, University of Potsdam","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5013810790","display_name":"Kristian M. M\u00fcller","orcid":"https://orcid.org/0000-0002-7914-0625"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Kristian M. M\u00fcller","raw_affiliation_strings":["1 Department of Mathematics, 2Department of Biology, University of Freiburg, 3EMBL-CRG Systems Biology program, CRG, Barcelona, Spain, 4Centre for Biological Signalling Studies (BIOSS), 5Institute for Advanced Studies (FRIAS), University of Freiburg and 6Institute for Biochemistry and Biology, University of Potsdam"],"affiliations":[{"raw_affiliation_string":"1 Department of Mathematics, 2Department of Biology, University of Freiburg, 3EMBL-CRG Systems Biology program, CRG, Barcelona, Spain, 4Centre for Biological Signalling Studies (BIOSS), 5Institute for Advanced Studies (FRIAS), University of Freiburg and 6Institute for Biochemistry and Biology, University of Potsdam","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5086244132"],"corresponding_institution_ids":[],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.2711,"has_fulltext":true,"cited_by_count":5,"citation_normalized_percentile":{"value":0.60488591,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"26","issue":"21","first_page":"2782","last_page":"2783"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11764","display_name":"Evolution and Genetic Dynamics","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9912999868392944,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7021247148513794},{"id":"https://openalex.org/keywords/construct","display_name":"Construct (python library)","score":0.644473135471344},{"id":"https://openalex.org/keywords/robot","display_name":"Robot","score":0.6369544863700867},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5908522605895996},{"id":"https://openalex.org/keywords/suite","display_name":"Suite","score":0.5760233402252197},{"id":"https://openalex.org/keywords/synthetic-biology","display_name":"Synthetic biology","score":0.563930332660675},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.5476599335670471},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5109497904777527},{"id":"https://openalex.org/keywords/protocol","display_name":"Protocol (science)","score":0.4848524332046509},{"id":"https://openalex.org/keywords/graphical-user-interface","display_name":"Graphical user interface","score":0.4793604016304016},{"id":"https://openalex.org/keywords/user-interface","display_name":"User interface","score":0.4671688973903656},{"id":"https://openalex.org/keywords/communications-protocol","display_name":"Communications protocol","score":0.46491509675979614},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.4571492671966553},{"id":"https://openalex.org/keywords/human\u2013computer-interaction","display_name":"Human\u2013computer interaction","score":0.42283719778060913},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2933703064918518},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.20785558223724365},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.18122795224189758},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.17649203538894653},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.13289013504981995},{"id":"https://openalex.org/keywords/systems-engineering","display_name":"Systems engineering","score":0.09235095977783203},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.08354076743125916}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7021247148513794},{"id":"https://openalex.org/C2780801425","wikidata":"https://www.wikidata.org/wiki/Q5164392","display_name":"Construct (python library)","level":2,"score":0.644473135471344},{"id":"https://openalex.org/C90509273","wikidata":"https://www.wikidata.org/wiki/Q11012","display_name":"Robot","level":2,"score":0.6369544863700867},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5908522605895996},{"id":"https://openalex.org/C79581498","wikidata":"https://www.wikidata.org/wiki/Q1367530","display_name":"Suite","level":2,"score":0.5760233402252197},{"id":"https://openalex.org/C191908910","wikidata":"https://www.wikidata.org/wiki/Q862838","display_name":"Synthetic biology","level":2,"score":0.563930332660675},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.5476599335670471},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5109497904777527},{"id":"https://openalex.org/C2780385302","wikidata":"https://www.wikidata.org/wiki/Q367158","display_name":"Protocol (science)","level":3,"score":0.4848524332046509},{"id":"https://openalex.org/C37789001","wikidata":"https://www.wikidata.org/wiki/Q782543","display_name":"Graphical user interface","level":2,"score":0.4793604016304016},{"id":"https://openalex.org/C89505385","wikidata":"https://www.wikidata.org/wiki/Q47146","display_name":"User interface","level":2,"score":0.4671688973903656},{"id":"https://openalex.org/C12269588","wikidata":"https://www.wikidata.org/wiki/Q132364","display_name":"Communications protocol","level":2,"score":0.46491509675979614},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.4571492671966553},{"id":"https://openalex.org/C107457646","wikidata":"https://www.wikidata.org/wiki/Q207434","display_name":"Human\u2013computer interaction","level":1,"score":0.42283719778060913},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2933703064918518},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.20785558223724365},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.18122795224189758},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.17649203538894653},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.13289013504981995},{"id":"https://openalex.org/C201995342","wikidata":"https://www.wikidata.org/wiki/Q682496","display_name":"Systems engineering","level":1,"score":0.09235095977783203},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.08354076743125916},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0},{"id":"https://openalex.org/C204787440","wikidata":"https://www.wikidata.org/wiki/Q188504","display_name":"Alternative medicine","level":2,"score":0.0},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0},{"id":"https://openalex.org/C95457728","wikidata":"https://www.wikidata.org/wiki/Q309","display_name":"History","level":0,"score":0.0},{"id":"https://openalex.org/C166957645","wikidata":"https://www.wikidata.org/wiki/Q23498","display_name":"Archaeology","level":1,"score":0.0},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058615","descriptor_name":"Synthetic Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058615","descriptor_name":"Synthetic Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058615","descriptor_name":"Synthetic Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btq518","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq518","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/21/2782/48851436/bioinformatics_26_21_2782.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:20841324","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20841324","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:kobv.de-opus4-uni-potsdam:31487","is_oa":false,"landing_page_url":"https://publishup.uni-potsdam.de/opus4-ubp/frontdoor/index/index/docId/31487","pdf_url":null,"source":{"id":"https://openalex.org/S4306400594","display_name":"publish.UP (University of Potsdam)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I176453806","host_organization_name":"University of Potsdam","host_organization_lineage":["https://openalex.org/I176453806"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btq518","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq518","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/21/2782/48851436/bioinformatics_26_21_2782.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2167193207.pdf","grobid_xml":"https://content.openalex.org/works/W2167193207.grobid-xml"},"referenced_works_count":4,"referenced_works":["https://openalex.org/W1515903010","https://openalex.org/W2100827887","https://openalex.org/W2150052683","https://openalex.org/W2158304452"],"related_works":["https://openalex.org/W3180179400","https://openalex.org/W2118366689","https://openalex.org/W2154998455","https://openalex.org/W2116888309","https://openalex.org/W2477652530","https://openalex.org/W2039055059","https://openalex.org/W2381088774","https://openalex.org/W963721989","https://openalex.org/W1547777009","https://openalex.org/W2183494409"],"abstract_inverted_index":{"The":[0],"robot":[1],"is":[2],"available":[3],"at":[4,9],"SynBioWave@appspot.com,":[5],"the":[6],"source":[7],"code":[8],"http://synbiowave.sourceforge.net":[10]},"counts_by_year":[{"year":2019,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
