{"id":"https://openalex.org/W2144771278","doi":"https://doi.org/10.1093/bioinformatics/btq495","title":"Preferential use of protein domain pairs as interaction mediators: order and transitivity","display_name":"Preferential use of protein domain pairs as interaction mediators: order and transitivity","publication_year":2010,"publication_date":"2010-08-27","ids":{"openalex":"https://openalex.org/W2144771278","doi":"https://doi.org/10.1093/bioinformatics/btq495","mag":"2144771278","pmid":"https://pubmed.ncbi.nlm.nih.gov/20802208"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btq495","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq495","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/20/2564/16896602/btq495.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/26/20/2564/16896602/btq495.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5004383338","display_name":"Zohar Barnett\u2010Itzhaki","orcid":"https://orcid.org/0000-0001-9891-9397"},"institutions":[{"id":"https://openalex.org/I197251160","display_name":"Hebrew University of Jerusalem","ror":"https://ror.org/03qxff017","country_code":"IL","type":"education","lineage":["https://openalex.org/I197251160"]}],"countries":["IL"],"is_corresponding":true,"raw_author_name":"Zohar Itzhaki","raw_affiliation_strings":["Department of Microbiology and Molecular Genetics, The Institute for Medical Research \u2013 Israel-Canada, Faculty of Medicine, The Hebrew University of Jerusalem, Jerusalem 91120, Israel","Department of Microbiology and Molecular Genetics, The Institute for Medical Research - Israel-Canada, Faculty of Medicine, The Hebrew University of Jerusalem, Jerusalem 91120, Israel"],"affiliations":[{"raw_affiliation_string":"Department of Microbiology and Molecular Genetics, The Institute for Medical Research \u2013 Israel-Canada, Faculty of Medicine, The Hebrew University of Jerusalem, Jerusalem 91120, Israel","institution_ids":["https://openalex.org/I197251160"]},{"raw_affiliation_string":"Department of Microbiology and Molecular Genetics, The Institute for Medical Research - Israel-Canada, Faculty of Medicine, The Hebrew University of Jerusalem, Jerusalem 91120, Israel","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088580694","display_name":"Eyal Akiva","orcid":"https://orcid.org/0000-0001-6074-8609"},"institutions":[{"id":"https://openalex.org/I197251160","display_name":"Hebrew University of Jerusalem","ror":"https://ror.org/03qxff017","country_code":"IL","type":"education","lineage":["https://openalex.org/I197251160"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Eyal Akiva","raw_affiliation_strings":["Department of Microbiology and Molecular Genetics, The Institute for Medical Research \u2013 Israel-Canada, Faculty of Medicine, The Hebrew University of Jerusalem, Jerusalem 91120, Israel","Department of Microbiology and Molecular Genetics, The Institute for Medical Research - Israel-Canada, Faculty of Medicine, The Hebrew University of Jerusalem, Jerusalem 91120, Israel"],"affiliations":[{"raw_affiliation_string":"Department of Microbiology and Molecular Genetics, The Institute for Medical Research \u2013 Israel-Canada, Faculty of Medicine, The Hebrew University of Jerusalem, Jerusalem 91120, Israel","institution_ids":["https://openalex.org/I197251160"]},{"raw_affiliation_string":"Department of Microbiology and Molecular Genetics, The Institute for Medical Research - Israel-Canada, Faculty of Medicine, The Hebrew University of Jerusalem, Jerusalem 91120, Israel","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5027892876","display_name":"Hanah Margalit","orcid":"https://orcid.org/0000-0002-2274-7784"},"institutions":[{"id":"https://openalex.org/I197251160","display_name":"Hebrew University of Jerusalem","ror":"https://ror.org/03qxff017","country_code":"IL","type":"education","lineage":["https://openalex.org/I197251160"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Hanah Margalit","raw_affiliation_strings":["Department of Microbiology and Molecular Genetics, The Institute for Medical Research \u2013 Israel-Canada, Faculty of Medicine, The Hebrew University of Jerusalem, Jerusalem 91120, Israel","Department of Microbiology and Molecular Genetics, The Institute for Medical Research - Israel-Canada, Faculty of Medicine, The Hebrew University of Jerusalem, Jerusalem 91120, Israel"],"affiliations":[{"raw_affiliation_string":"Department of Microbiology and Molecular Genetics, The Institute for Medical Research \u2013 Israel-Canada, Faculty of Medicine, The Hebrew University of Jerusalem, Jerusalem 91120, Israel","institution_ids":["https://openalex.org/I197251160"]},{"raw_affiliation_string":"Department of Microbiology and Molecular Genetics, The Institute for Medical Research - Israel-Canada, Faculty of Medicine, The Hebrew University of Jerusalem, Jerusalem 91120, Israel","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5004383338"],"corresponding_institution_ids":["https://openalex.org/I197251160"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.9252,"has_fulltext":false,"cited_by_count":12,"citation_normalized_percentile":{"value":0.7404627,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"26","issue":"20","first_page":"2564","last_page":"2570"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9731000065803528,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9656000137329102,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/transitive-relation","display_name":"Transitive relation","score":0.805974543094635},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.7727507948875427},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.5812870860099792},{"id":"https://openalex.org/keywords/protein\u2013protein-interaction","display_name":"Protein\u2013protein interaction","score":0.5400837659835815},{"id":"https://openalex.org/keywords/protein-domain","display_name":"Protein domain","score":0.4928307831287384},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.48469188809394836},{"id":"https://openalex.org/keywords/interaction-network","display_name":"Interaction network","score":0.4799211919307709},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.43955257534980774},{"id":"https://openalex.org/keywords/preference","display_name":"Preference","score":0.41795456409454346},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.24953028559684753},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.22866308689117432},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1676350235939026},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.09404247999191284},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.07406020164489746},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.06513983011245728}],"concepts":[{"id":"https://openalex.org/C191399111","wikidata":"https://www.wikidata.org/wiki/Q64861","display_name":"Transitive relation","level":2,"score":0.805974543094635},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.7727507948875427},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5812870860099792},{"id":"https://openalex.org/C11804247","wikidata":"https://www.wikidata.org/wiki/Q896177","display_name":"Protein\u2013protein interaction","level":2,"score":0.5400837659835815},{"id":"https://openalex.org/C144292202","wikidata":"https://www.wikidata.org/wiki/Q898273","display_name":"Protein domain","level":3,"score":0.4928307831287384},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.48469188809394836},{"id":"https://openalex.org/C55105296","wikidata":"https://www.wikidata.org/wiki/Q841382","display_name":"Interaction network","level":3,"score":0.4799211919307709},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.43955257534980774},{"id":"https://openalex.org/C2781249084","wikidata":"https://www.wikidata.org/wiki/Q908656","display_name":"Preference","level":2,"score":0.41795456409454346},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.24953028559684753},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.22866308689117432},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1676350235939026},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.09404247999191284},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.07406020164489746},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.06513983011245728},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054730","descriptor_name":"Protein Interaction Domains and Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054730","descriptor_name":"Protein Interaction Domains and Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054730","descriptor_name":"Protein Interaction Domains and Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btq495","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq495","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/20/2564/16896602/btq495.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:20802208","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20802208","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btq495","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq495","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/20/2564/16896602/btq495.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320322252","display_name":"Israel Science Foundation","ror":"https://ror.org/04sazxf24"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2144771278.pdf","grobid_xml":"https://content.openalex.org/works/W2144771278.grobid-xml"},"referenced_works_count":42,"referenced_works":["https://openalex.org/W1963646848","https://openalex.org/W1977845138","https://openalex.org/W1984249061","https://openalex.org/W1987546980","https://openalex.org/W1988422871","https://openalex.org/W1991977341","https://openalex.org/W2010825547","https://openalex.org/W2015961921","https://openalex.org/W2016709199","https://openalex.org/W2017680124","https://openalex.org/W2021389024","https://openalex.org/W2036894128","https://openalex.org/W2045131140","https://openalex.org/W2055043387","https://openalex.org/W2060584527","https://openalex.org/W2067865468","https://openalex.org/W2077776336","https://openalex.org/W2080922074","https://openalex.org/W2085145974","https://openalex.org/W2085277871","https://openalex.org/W2095910716","https://openalex.org/W2098045561","https://openalex.org/W2099047355","https://openalex.org/W2101330776","https://openalex.org/W2102057828","https://openalex.org/W2110699703","https://openalex.org/W2117035344","https://openalex.org/W2130479394","https://openalex.org/W2133138357","https://openalex.org/W2141885858","https://openalex.org/W2145080853","https://openalex.org/W2145427519","https://openalex.org/W2146108849","https://openalex.org/W2150452800","https://openalex.org/W2155442043","https://openalex.org/W2159675211","https://openalex.org/W2160232999","https://openalex.org/W2161811112","https://openalex.org/W2161959858","https://openalex.org/W2169408159","https://openalex.org/W4210323379","https://openalex.org/W6681473127"],"related_works":["https://openalex.org/W4232779013","https://openalex.org/W2026342583","https://openalex.org/W1843018858","https://openalex.org/W2144771278","https://openalex.org/W1963646848","https://openalex.org/W1641053118","https://openalex.org/W2073038311","https://openalex.org/W2021788342","https://openalex.org/W2911363402","https://openalex.org/W2126609329"],"abstract_inverted_index":{"Supplementary":[0],"data":[1],"are":[2],"available":[3],"at":[4],"Bioinformatics":[5],"online.":[6]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":4}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
