{"id":"https://openalex.org/W4246822260","doi":"https://doi.org/10.1093/bioinformatics/btq494","title":"BRAT: bisulfite-treated reads analysis tool","display_name":"BRAT: bisulfite-treated reads analysis tool","publication_year":2010,"publication_date":"2010-09-16","ids":{"openalex":"https://openalex.org/W4246822260","doi":"https://doi.org/10.1093/bioinformatics/btq494"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btq494","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq494","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/19/2499/48857806/bioinformatics_26_19_2499.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/26/19/2499/48857806/bioinformatics_26_19_2499.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5022890031","display_name":"Elena Y. Harris","orcid":null},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Elena Y. Harris","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040260693","display_name":"Nadia Ponts","orcid":"https://orcid.org/0000-0002-3205-6776"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Nadia Ponts","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078083636","display_name":"Aleksandr Levchuk","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Aleksandr Levchuk","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032942104","display_name":"Karine G. Le Roch","orcid":"https://orcid.org/0000-0002-4862-9292"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Karine Le Roch","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"last","author":{"id":null,"display_name":"Stefano Lonardi","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Stefano Lonardi","raw_affiliation_strings":[],"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5022890031"],"corresponding_institution_ids":[],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.3795,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.71221358,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"26","issue":"19","first_page":"2499","last_page":"2499"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11213","display_name":"Genomic variations and chromosomal abnormalities","score":0.9962000250816345,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11213","display_name":"Genomic variations and chromosomal abnormalities","score":0.9962000250816345,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.9807999730110168,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9696999788284302,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/bisulfite","display_name":"Bisulfite","score":0.8508061170578003},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4954105615615845},{"id":"https://openalex.org/keywords/sodium-bisulfite","display_name":"Sodium bisulfite","score":0.4257124960422516},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3565590977668762},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2631048858165741},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.17481449246406555},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.13176482915878296},{"id":"https://openalex.org/keywords/dna-methylation","display_name":"DNA methylation","score":0.11759904026985168},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.044821321964263916}],"concepts":[{"id":"https://openalex.org/C2775959680","wikidata":"https://www.wikidata.org/wiki/Q2718222","display_name":"Bisulfite","level":5,"score":0.8508061170578003},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4954105615615845},{"id":"https://openalex.org/C2775959488","wikidata":"https://www.wikidata.org/wiki/Q407891","display_name":"Sodium bisulfite","level":2,"score":0.4257124960422516},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3565590977668762},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2631048858165741},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.17481449246406555},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.13176482915878296},{"id":"https://openalex.org/C190727270","wikidata":"https://www.wikidata.org/wiki/Q874745","display_name":"DNA methylation","level":4,"score":0.11759904026985168},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.044821321964263916},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1093/bioinformatics/btq494","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq494","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/19/2499/48857806/bioinformatics_26_19_2499.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmh:oai:europepmc.org:2717528","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3726071","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btq494","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq494","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/19/2499/48857806/bioinformatics_26_19_2499.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4246822260.pdf","grobid_xml":"https://content.openalex.org/works/W4246822260.grobid-xml"},"referenced_works_count":1,"referenced_works":["https://openalex.org/W2107688500"],"related_works":["https://openalex.org/W2040183911","https://openalex.org/W2470044550","https://openalex.org/W2316384143","https://openalex.org/W2002965127","https://openalex.org/W2087999257","https://openalex.org/W2053987361","https://openalex.org/W2083975748","https://openalex.org/W1027448982","https://openalex.org/W1965301144","https://openalex.org/W2084750232"],"abstract_inverted_index":null,"counts_by_year":[{"year":2018,"cited_by_count":1},{"year":2015,"cited_by_count":2},{"year":2012,"cited_by_count":2}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
