{"id":"https://openalex.org/W2128986427","doi":"https://doi.org/10.1093/bioinformatics/btq459","title":"Click-words: learning to predict document keywords from a user perspective","display_name":"Click-words: learning to predict document keywords from a user perspective","publication_year":2010,"publication_date":"2010-09-01","ids":{"openalex":"https://openalex.org/W2128986427","doi":"https://doi.org/10.1093/bioinformatics/btq459","mag":"2128986427","pmid":"https://pubmed.ncbi.nlm.nih.gov/20810602"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btq459","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq459","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/21/2767/48852851/bioinformatics_26_21_2767.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/26/21/2767/48852851/bioinformatics_26_21_2767.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5008126200","display_name":"Rezarta Islamaj","orcid":"https://orcid.org/0000-0001-5651-1860"},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Rezarta Islamaj Do\u011fan","raw_affiliation_strings":["National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA","National Center for Biotechnology Information; National Library of Medicine; National Institutes of Health; Bethesda; MD; 20894; USA"],"affiliations":[{"raw_affiliation_string":"National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA","institution_ids":["https://openalex.org/I4210109390","https://openalex.org/I1299303238"]},{"raw_affiliation_string":"National Center for Biotechnology Information; National Library of Medicine; National Institutes of Health; Bethesda; MD; 20894; USA","institution_ids":["https://openalex.org/I1299303238"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5083081872","display_name":"Zhiyong Lu","orcid":"https://orcid.org/0000-0001-9998-916X"},"institutions":[{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]},{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zhiyong Lu","raw_affiliation_strings":["National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA","National Center for Biotechnology Information; National Library of Medicine; National Institutes of Health; Bethesda; MD; 20894; USA"],"affiliations":[{"raw_affiliation_string":"National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA","institution_ids":["https://openalex.org/I4210109390","https://openalex.org/I1299303238"]},{"raw_affiliation_string":"National Center for Biotechnology Information; National Library of Medicine; National Institutes of Health; Bethesda; MD; 20894; USA","institution_ids":["https://openalex.org/I1299303238"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5008126200"],"corresponding_institution_ids":["https://openalex.org/I1299303238","https://openalex.org/I4210109390"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":2.7982,"has_fulltext":true,"cited_by_count":16,"citation_normalized_percentile":{"value":0.91435031,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"26","issue":"21","first_page":"2767","last_page":"2775"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13083","display_name":"Advanced Text Analysis Techniques","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T13083","display_name":"Advanced Text Analysis Techniques","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9908999800682068,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8361833691596985},{"id":"https://openalex.org/keywords/tf\u2013idf","display_name":"tf\u2013idf","score":0.7892189025878906},{"id":"https://openalex.org/keywords/ranking","display_name":"Ranking (information retrieval)","score":0.7297461032867432},{"id":"https://openalex.org/keywords/perspective","display_name":"Perspective (graphical)","score":0.6931442022323608},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.6566870808601379},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.628020703792572},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.5184723734855652},{"id":"https://openalex.org/keywords/popularity","display_name":"Popularity","score":0.5096619129180908},{"id":"https://openalex.org/keywords/word","display_name":"Word (group theory)","score":0.48519447445869446},{"id":"https://openalex.org/keywords/term","display_name":"Term (time)","score":0.46687954664230347},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4191426634788513},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.32250869274139404},{"id":"https://openalex.org/keywords/linguistics","display_name":"Linguistics","score":0.1029549241065979}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8361833691596985},{"id":"https://openalex.org/C81758059","wikidata":"https://www.wikidata.org/wiki/Q796584","display_name":"tf\u2013idf","level":3,"score":0.7892189025878906},{"id":"https://openalex.org/C189430467","wikidata":"https://www.wikidata.org/wiki/Q7293293","display_name":"Ranking (information retrieval)","level":2,"score":0.7297461032867432},{"id":"https://openalex.org/C12713177","wikidata":"https://www.wikidata.org/wiki/Q1900281","display_name":"Perspective (graphical)","level":2,"score":0.6931442022323608},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.6566870808601379},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.628020703792572},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.5184723734855652},{"id":"https://openalex.org/C2780586970","wikidata":"https://www.wikidata.org/wiki/Q1357284","display_name":"Popularity","level":2,"score":0.5096619129180908},{"id":"https://openalex.org/C90805587","wikidata":"https://www.wikidata.org/wiki/Q10944557","display_name":"Word (group theory)","level":2,"score":0.48519447445869446},{"id":"https://openalex.org/C61797465","wikidata":"https://www.wikidata.org/wiki/Q1188986","display_name":"Term (time)","level":2,"score":0.46687954664230347},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4191426634788513},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.32250869274139404},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.1029549241065979},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C77805123","wikidata":"https://www.wikidata.org/wiki/Q161272","display_name":"Social psychology","level":1,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000043","descriptor_name":"Abstracting and Indexing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D000043","descriptor_name":"Abstracting and Indexing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D000043","descriptor_name":"Abstracting and Indexing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016239","descriptor_name":"MEDLINE","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016239","descriptor_name":"MEDLINE","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016239","descriptor_name":"MEDLINE","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btq459","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq459","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/21/2767/48852851/bioinformatics_26_21_2767.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:20810602","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20810602","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:2958742","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2958742","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btq459","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq459","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/21/2767/48852851/bioinformatics_26_21_2767.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education","score":0.6700000166893005}],"awards":[],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337372","display_name":"U.S. National Library of Medicine","ror":"https://ror.org/0060t0j89"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2128986427.pdf","grobid_xml":"https://content.openalex.org/works/W2128986427.grobid-xml"},"referenced_works_count":42,"referenced_works":["https://openalex.org/W91893616","https://openalex.org/W96003883","https://openalex.org/W1532325895","https://openalex.org/W1550258693","https://openalex.org/W1578526766","https://openalex.org/W1592020665","https://openalex.org/W1593657456","https://openalex.org/W1978394996","https://openalex.org/W1984349431","https://openalex.org/W1991570251","https://openalex.org/W2012852390","https://openalex.org/W2026784708","https://openalex.org/W2031996334","https://openalex.org/W2043004216","https://openalex.org/W2061167720","https://openalex.org/W2064418625","https://openalex.org/W2078754983","https://openalex.org/W2079090652","https://openalex.org/W2091825929","https://openalex.org/W2097385711","https://openalex.org/W2127241285","https://openalex.org/W2132812398","https://openalex.org/W2135753071","https://openalex.org/W2141457763","https://openalex.org/W2146769536","https://openalex.org/W2147558260","https://openalex.org/W2156577800","https://openalex.org/W2158018156","https://openalex.org/W2163303745","https://openalex.org/W2164609731","https://openalex.org/W2168022112","https://openalex.org/W2402775959","https://openalex.org/W2737184189","https://openalex.org/W4213009331","https://openalex.org/W4248561988","https://openalex.org/W6603666240","https://openalex.org/W6632766574","https://openalex.org/W6635482629","https://openalex.org/W6680881627","https://openalex.org/W6681629299","https://openalex.org/W6684291532","https://openalex.org/W6713134541"],"related_works":["https://openalex.org/W2368605798","https://openalex.org/W2518037665","https://openalex.org/W2348524959","https://openalex.org/W2477036161","https://openalex.org/W2368049389","https://openalex.org/W2170801710","https://openalex.org/W2384861574","https://openalex.org/W2952704802","https://openalex.org/W4294565801","https://openalex.org/W2142306706"],"abstract_inverted_index":{"We":[0,47],"developed":[1],"a":[2,18,99],"machine":[3],"learning":[4],"approach":[5],"to":[6,70,77,81,87,104,110,117],"learn":[7],"the":[8,45,49,94,107],"unique":[9],"characteristics":[10],"of":[11,20,26,33,60,98],"click-words.":[12],"Each":[13],"word":[14],"was":[15],"represented":[16],"by":[17],"set":[19],"features":[21,52],"that":[22,115],"included":[23],"different":[24],"types":[25],"information,":[27],"such":[28],"as":[29],"semantic":[30],"type,":[31],"part":[32],"speech":[34],"tag,":[35],"term":[36],"frequency-inverse":[37],"document":[38,118],"frequency":[39],"(TF-IDF)":[40],"weight":[41],"and":[42,53,86,96],"location":[43],"in":[44,68,83,90,112],"abstract.":[46],"identified":[48],"most":[50],"important":[51],"evaluated":[54],"our":[55],"model":[56],"using":[57],"6":[58],"months":[59],"PubMed":[61],"click-through":[62],"logs.":[63],"Our":[64],"results":[65],"suggest":[66],"that,":[67],"addition":[69],"carrying":[71],"high":[72],"TF-IDF":[73],"weight,":[74],"click-words":[75],"tend":[76],"be":[78],"biomedical":[79],"entities,":[80],"exist":[82],"article":[84,91],"titles,":[85],"occur":[88],"repeatedly":[89],"abstracts.":[92],"Given":[93],"abstract":[95],"title":[97],"document,":[100],"we":[101],"are":[102],"able":[103],"accurately":[105],"predict":[106],"words":[108],"likely":[109],"appear":[111],"user":[113],"queries":[114],"lead":[116],"clicks.":[119]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2018,"cited_by_count":2},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":3}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2016-06-24T00:00:00"}
