{"id":"https://openalex.org/W2142643924","doi":"https://doi.org/10.1093/bioinformatics/btq449","title":"Identifying informative subsets of the Gene Ontology with information bottleneck methods","display_name":"Identifying informative subsets of the Gene Ontology with information bottleneck methods","publication_year":2010,"publication_date":"2010-08-11","ids":{"openalex":"https://openalex.org/W2142643924","doi":"https://doi.org/10.1093/bioinformatics/btq449","mag":"2142643924","pmid":"https://pubmed.ncbi.nlm.nih.gov/20702400"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btq449","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq449","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/19/2445/48855404/bioinformatics_26_19_2445.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"bronze","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/26/19/2445/48855404/bioinformatics_26_19_2445.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5004366934","display_name":"Bo Jin","orcid":"https://orcid.org/0000-0001-9255-5772"},"institutions":[{"id":"https://openalex.org/I4210134769","display_name":"University of Pittsburgh Medical Center","ror":"https://ror.org/04ehecz88","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210098814","https://openalex.org/I4210134769"]},{"id":"https://openalex.org/I153297377","display_name":"Medical University of South Carolina","ror":"https://ror.org/012jban78","country_code":"US","type":"education","lineage":["https://openalex.org/I153297377"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Bo Jin","raw_affiliation_strings":["Department of Biochemistry and Molecular Biology, Medical University of South Carolina, 174 Ashley Ave, Charleston, SC 29425; Department of Biomedical Informatics, University of Pittsburgh, UPMC Cancer Pavilion, Suite 301, 5150 Centre Avenue, Pittsburgh, PA 15232, USA","Department of Biochemistry and Molecular Biology, Medical University of South Carolina, 174 Ashley Ave, Charleston, SC 29425"],"affiliations":[{"raw_affiliation_string":"Department of Biochemistry and Molecular Biology, Medical University of South Carolina, 174 Ashley Ave, Charleston, SC 29425; Department of Biomedical Informatics, University of Pittsburgh, UPMC Cancer Pavilion, Suite 301, 5150 Centre Avenue, Pittsburgh, PA 15232, USA","institution_ids":["https://openalex.org/I4210134769","https://openalex.org/I153297377"]},{"raw_affiliation_string":"Department of Biochemistry and Molecular Biology, Medical University of South Carolina, 174 Ashley Ave, Charleston, SC 29425","institution_ids":["https://openalex.org/I153297377"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5046515259","display_name":"Xinghua Lu","orcid":"https://orcid.org/0000-0002-8599-2269"},"institutions":[{"id":"https://openalex.org/I153297377","display_name":"Medical University of South Carolina","ror":"https://ror.org/012jban78","country_code":"US","type":"education","lineage":["https://openalex.org/I153297377"]},{"id":"https://openalex.org/I4210134769","display_name":"University of Pittsburgh Medical Center","ror":"https://ror.org/04ehecz88","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210098814","https://openalex.org/I4210134769"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xinghua Lu","raw_affiliation_strings":["Department of Biochemistry and Molecular Biology, Medical University of South Carolina, 174 Ashley Ave, Charleston, SC 29425; Department of Biomedical Informatics, University of Pittsburgh, UPMC Cancer Pavilion, Suite 301, 5150 Centre Avenue, Pittsburgh, PA 15232, USA","Department of Biochemistry and Molecular Biology, Medical University of South Carolina, 174 Ashley Ave, Charleston, SC 29425"],"affiliations":[{"raw_affiliation_string":"Department of Biochemistry and Molecular Biology, Medical University of South Carolina, 174 Ashley Ave, Charleston, SC 29425; Department of Biomedical Informatics, University of Pittsburgh, UPMC Cancer Pavilion, Suite 301, 5150 Centre Avenue, Pittsburgh, PA 15232, USA","institution_ids":["https://openalex.org/I4210134769","https://openalex.org/I153297377"]},{"raw_affiliation_string":"Department of Biochemistry and Molecular Biology, Medical University of South Carolina, 174 Ashley Ave, Charleston, SC 29425","institution_ids":["https://openalex.org/I153297377"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5004366934"],"corresponding_institution_ids":["https://openalex.org/I153297377","https://openalex.org/I4210134769"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":0.9491,"has_fulltext":false,"cited_by_count":23,"citation_normalized_percentile":{"value":0.74693758,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"26","issue":"19","first_page":"2445","last_page":"2451"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9916999936103821,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8003379106521606},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.6418495178222656},{"id":"https://openalex.org/keywords/framenet","display_name":"FrameNet","score":0.62432461977005},{"id":"https://openalex.org/keywords/bottleneck","display_name":"Bottleneck","score":0.6155783534049988},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.6016808748245239},{"id":"https://openalex.org/keywords/semantic-similarity","display_name":"Semantic similarity","score":0.5481380820274353},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5479485988616943},{"id":"https://openalex.org/keywords/vocabulary","display_name":"Vocabulary","score":0.5427179336547852},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.511267900466919},{"id":"https://openalex.org/keywords/semantics","display_name":"Semantics (computer science)","score":0.5068920254707336},{"id":"https://openalex.org/keywords/information-bottleneck-method","display_name":"Information bottleneck method","score":0.5001134872436523},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.47408735752105713},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.44006410241127014},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.42189767956733704},{"id":"https://openalex.org/keywords/controlled-vocabulary","display_name":"Controlled vocabulary","score":0.41070783138275146},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.10034596920013428}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8003379106521606},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.6418495178222656},{"id":"https://openalex.org/C185754541","wikidata":"https://www.wikidata.org/wiki/Q1322093","display_name":"FrameNet","level":3,"score":0.62432461977005},{"id":"https://openalex.org/C2780513914","wikidata":"https://www.wikidata.org/wiki/Q18210350","display_name":"Bottleneck","level":2,"score":0.6155783534049988},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.6016808748245239},{"id":"https://openalex.org/C130318100","wikidata":"https://www.wikidata.org/wiki/Q2268914","display_name":"Semantic similarity","level":2,"score":0.5481380820274353},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5479485988616943},{"id":"https://openalex.org/C2777601683","wikidata":"https://www.wikidata.org/wiki/Q6499736","display_name":"Vocabulary","level":2,"score":0.5427179336547852},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.511267900466919},{"id":"https://openalex.org/C184337299","wikidata":"https://www.wikidata.org/wiki/Q1437428","display_name":"Semantics (computer science)","level":2,"score":0.5068920254707336},{"id":"https://openalex.org/C60008888","wikidata":"https://www.wikidata.org/wiki/Q6031013","display_name":"Information bottleneck method","level":3,"score":0.5001134872436523},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.47408735752105713},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.44006410241127014},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.42189767956733704},{"id":"https://openalex.org/C110615152","wikidata":"https://www.wikidata.org/wiki/Q1469824","display_name":"Controlled vocabulary","level":2,"score":0.41070783138275146},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.10034596920013428},{"id":"https://openalex.org/C186644900","wikidata":"https://www.wikidata.org/wiki/Q194152","display_name":"Parsing","level":2,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C149635348","wikidata":"https://www.wikidata.org/wiki/Q193040","display_name":"Embedded system","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btq449","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq449","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/19/2445/48855404/bioinformatics_26_19_2445.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:20702400","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20702400","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:2944202","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2944202","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btq449","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq449","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/26/19/2445/48855404/bioinformatics_26_19_2445.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Quality Education","score":0.6600000262260437,"id":"https://metadata.un.org/sdg/4"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2142643924.pdf","grobid_xml":"https://content.openalex.org/works/W2142643924.grobid-xml"},"referenced_works_count":43,"referenced_works":["https://openalex.org/W1583837637","https://openalex.org/W1603229901","https://openalex.org/W1647729745","https://openalex.org/W1686946872","https://openalex.org/W1966168239","https://openalex.org/W2014849717","https://openalex.org/W2016799887","https://openalex.org/W2041670460","https://openalex.org/W2060314721","https://openalex.org/W2082523740","https://openalex.org/W2091978351","https://openalex.org/W2097795961","https://openalex.org/W2098162425","https://openalex.org/W2100935296","https://openalex.org/W2103017472","https://openalex.org/W2113142309","https://openalex.org/W2115235175","https://openalex.org/W2117805756","https://openalex.org/W2121343862","https://openalex.org/W2127563440","https://openalex.org/W2128049108","https://openalex.org/W2141461755","https://openalex.org/W2143079199","https://openalex.org/W2146950091","https://openalex.org/W2148603752","https://openalex.org/W2149911752","https://openalex.org/W2150452501","https://openalex.org/W2154122057","https://openalex.org/W2154219988","https://openalex.org/W2158217645","https://openalex.org/W2162311237","https://openalex.org/W2169896388","https://openalex.org/W2222512263","https://openalex.org/W2531563875","https://openalex.org/W2979454998","https://openalex.org/W4254721730","https://openalex.org/W6636975626","https://openalex.org/W6637108112","https://openalex.org/W6675339850","https://openalex.org/W6677712588","https://openalex.org/W6681097300","https://openalex.org/W6682139550","https://openalex.org/W6682598680"],"related_works":["https://openalex.org/W1504394672","https://openalex.org/W2622284819","https://openalex.org/W3089381707","https://openalex.org/W3034190530","https://openalex.org/W2741297526","https://openalex.org/W4295728955","https://openalex.org/W3129794609","https://openalex.org/W2949033103","https://openalex.org/W2304083841","https://openalex.org/W2362448732"],"abstract_inverted_index":{"http://carcweb.musc.edu/TextminingProjects/.":[0]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2018,"cited_by_count":2},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":4},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":4},{"year":2012,"cited_by_count":2}],"updated_date":"2026-04-02T15:55:50.835912","created_date":"2025-10-10T00:00:00"}
