{"id":"https://openalex.org/W2169804623","doi":"https://doi.org/10.1093/bioinformatics/btq436","title":"MetDAT: a modular and workflow-based free online pipeline for mass spectrometry data processing, analysis and interpretation","display_name":"MetDAT: a modular and workflow-based free online pipeline for mass spectrometry data processing, analysis and interpretation","publication_year":2010,"publication_date":"2010-08-11","ids":{"openalex":"https://openalex.org/W2169804623","doi":"https://doi.org/10.1093/bioinformatics/btq436","mag":"2169804623","pmid":"https://pubmed.ncbi.nlm.nih.gov/20702401"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btq436","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq436","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5061139733","display_name":"Ambarish Biswas","orcid":null},"institutions":[{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]}],"countries":["SG"],"is_corresponding":true,"raw_author_name":"Ambarish Biswas","raw_affiliation_strings":["1 Singapore-Delft Water Alliance, National University of Singapore, Singapore 117576, 2Small Molecules Biology Laboratory, Department of Biological Sciences, National University of Singapore, Singapore 117543 and 3NUS Environmental Research Institute (NERI), #02-01, T-Lab Building (TL), 5A Engineering Drive 1, Singapore 117411"],"affiliations":[{"raw_affiliation_string":"1 Singapore-Delft Water Alliance, National University of Singapore, Singapore 117576, 2Small Molecules Biology Laboratory, Department of Biological Sciences, National University of Singapore, Singapore 117543 and 3NUS Environmental Research Institute (NERI), #02-01, T-Lab Building (TL), 5A Engineering Drive 1, Singapore 117411","institution_ids":["https://openalex.org/I165932596"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062085652","display_name":"Kalyan C. Mynampati","orcid":null},"institutions":[{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Kalyan C. Mynampati","raw_affiliation_strings":["1 Singapore-Delft Water Alliance, National University of Singapore, Singapore 117576, 2Small Molecules Biology Laboratory, Department of Biological Sciences, National University of Singapore, Singapore 117543 and 3NUS Environmental Research Institute (NERI), #02-01, T-Lab Building (TL), 5A Engineering Drive 1, Singapore 117411"],"affiliations":[{"raw_affiliation_string":"1 Singapore-Delft Water Alliance, National University of Singapore, Singapore 117576, 2Small Molecules Biology Laboratory, Department of Biological Sciences, National University of Singapore, Singapore 117543 and 3NUS Environmental Research Institute (NERI), #02-01, T-Lab Building (TL), 5A Engineering Drive 1, Singapore 117411","institution_ids":["https://openalex.org/I165932596"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054718396","display_name":"Shivshankar Umashankar","orcid":null},"institutions":[{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Shivshankar Umashankar","raw_affiliation_strings":["1 Singapore-Delft Water Alliance, National University of Singapore, Singapore 117576, 2Small Molecules Biology Laboratory, Department of Biological Sciences, National University of Singapore, Singapore 117543 and 3NUS Environmental Research Institute (NERI), #02-01, T-Lab Building (TL), 5A Engineering Drive 1, Singapore 117411"],"affiliations":[{"raw_affiliation_string":"1 Singapore-Delft Water Alliance, National University of Singapore, Singapore 117576, 2Small Molecules Biology Laboratory, Department of Biological Sciences, National University of Singapore, Singapore 117543 and 3NUS Environmental Research Institute (NERI), #02-01, T-Lab Building (TL), 5A Engineering Drive 1, Singapore 117411","institution_ids":["https://openalex.org/I165932596"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109510706","display_name":"Sheela Reuben","orcid":null},"institutions":[{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Sheela Reuben","raw_affiliation_strings":["1 Singapore-Delft Water Alliance, National University of Singapore, Singapore 117576, 2Small Molecules Biology Laboratory, Department of Biological Sciences, National University of Singapore, Singapore 117543 and 3NUS Environmental Research Institute (NERI), #02-01, T-Lab Building (TL), 5A Engineering Drive 1, Singapore 117411"],"affiliations":[{"raw_affiliation_string":"1 Singapore-Delft Water Alliance, National University of Singapore, Singapore 117576, 2Small Molecules Biology Laboratory, Department of Biological Sciences, National University of Singapore, Singapore 117543 and 3NUS Environmental Research Institute (NERI), #02-01, T-Lab Building (TL), 5A Engineering Drive 1, Singapore 117411","institution_ids":["https://openalex.org/I165932596"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037911899","display_name":"Gauri Parab","orcid":null},"institutions":[{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Gauri Parab","raw_affiliation_strings":["1 Singapore-Delft Water Alliance, National University of Singapore, Singapore 117576, 2Small Molecules Biology Laboratory, Department of Biological Sciences, National University of Singapore, Singapore 117543 and 3NUS Environmental Research Institute (NERI), #02-01, T-Lab Building (TL), 5A Engineering Drive 1, Singapore 117411"],"affiliations":[{"raw_affiliation_string":"1 Singapore-Delft Water Alliance, National University of Singapore, Singapore 117576, 2Small Molecules Biology Laboratory, Department of Biological Sciences, National University of Singapore, Singapore 117543 and 3NUS Environmental Research Institute (NERI), #02-01, T-Lab Building (TL), 5A Engineering Drive 1, Singapore 117411","institution_ids":["https://openalex.org/I165932596"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080003821","display_name":"Raghuraj K. Rao","orcid":null},"institutions":[{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Raghuraj Rao","raw_affiliation_strings":["1 Singapore-Delft Water Alliance, National University of Singapore, Singapore 117576, 2Small Molecules Biology Laboratory, Department of Biological Sciences, National University of Singapore, Singapore 117543 and 3NUS Environmental Research Institute (NERI), #02-01, T-Lab Building (TL), 5A Engineering Drive 1, Singapore 117411"],"affiliations":[{"raw_affiliation_string":"1 Singapore-Delft Water Alliance, National University of Singapore, Singapore 117576, 2Small Molecules Biology Laboratory, Department of Biological Sciences, National University of Singapore, Singapore 117543 and 3NUS Environmental Research Institute (NERI), #02-01, T-Lab Building (TL), 5A Engineering Drive 1, Singapore 117411","institution_ids":["https://openalex.org/I165932596"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013338950","display_name":"Velayutham S. Kannan","orcid":null},"institutions":[{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Velayutham S. Kannan","raw_affiliation_strings":["1 Singapore-Delft Water Alliance, National University of Singapore, Singapore 117576, 2Small Molecules Biology Laboratory, Department of Biological Sciences, National University of Singapore, Singapore 117543 and 3NUS Environmental Research Institute (NERI), #02-01, T-Lab Building (TL), 5A Engineering Drive 1, Singapore 117411"],"affiliations":[{"raw_affiliation_string":"1 Singapore-Delft Water Alliance, National University of Singapore, Singapore 117576, 2Small Molecules Biology Laboratory, Department of Biological Sciences, National University of Singapore, Singapore 117543 and 3NUS Environmental Research Institute (NERI), #02-01, T-Lab Building (TL), 5A Engineering Drive 1, Singapore 117411","institution_ids":["https://openalex.org/I165932596"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5083567626","display_name":"Sanjay Swarup","orcid":"https://orcid.org/0000-0001-6391-0624"},"institutions":[{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Sanjay Swarup","raw_affiliation_strings":["1 Singapore-Delft Water Alliance, National University of Singapore, Singapore 117576, 2Small Molecules Biology Laboratory, Department of Biological Sciences, National University of Singapore, Singapore 117543 and 3NUS Environmental Research Institute (NERI), #02-01, T-Lab Building (TL), 5A Engineering Drive 1, Singapore 117411"],"affiliations":[{"raw_affiliation_string":"1 Singapore-Delft Water Alliance, National University of Singapore, Singapore 117576, 2Small Molecules Biology Laboratory, Department of Biological Sciences, National University of Singapore, Singapore 117543 and 3NUS Environmental Research Institute (NERI), #02-01, T-Lab Building (TL), 5A Engineering Drive 1, Singapore 117411","institution_ids":["https://openalex.org/I165932596"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5061139733"],"corresponding_institution_ids":["https://openalex.org/I165932596"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":null,"fwci":1.7183,"has_fulltext":false,"cited_by_count":34,"citation_normalized_percentile":{"value":0.84137413,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"26","issue":"20","first_page":"2639","last_page":"2640"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9800000190734863,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9751999974250793,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.8300861120223999},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7889894247055054},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.7376578450202942},{"id":"https://openalex.org/keywords/univariate","display_name":"Univariate","score":0.6246334910392761},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5449288487434387},{"id":"https://openalex.org/keywords/data-processing","display_name":"Data processing","score":0.5368466973304749},{"id":"https://openalex.org/keywords/modular-design","display_name":"Modular design","score":0.5347681641578674},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4277571141719818},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3481045663356781},{"id":"https://openalex.org/keywords/multivariate-statistics","display_name":"Multivariate statistics","score":0.3192540407180786},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.13226193189620972},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.12152805924415588}],"concepts":[{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.8300861120223999},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7889894247055054},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.7376578450202942},{"id":"https://openalex.org/C199163554","wikidata":"https://www.wikidata.org/wiki/Q1681619","display_name":"Univariate","level":3,"score":0.6246334910392761},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5449288487434387},{"id":"https://openalex.org/C138827492","wikidata":"https://www.wikidata.org/wiki/Q6661985","display_name":"Data processing","level":2,"score":0.5368466973304749},{"id":"https://openalex.org/C101468663","wikidata":"https://www.wikidata.org/wiki/Q1620158","display_name":"Modular design","level":2,"score":0.5347681641578674},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4277571141719818},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3481045663356781},{"id":"https://openalex.org/C161584116","wikidata":"https://www.wikidata.org/wiki/Q1952580","display_name":"Multivariate statistics","level":2,"score":0.3192540407180786},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.13226193189620972},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.12152805924415588}],"mesh":[{"descriptor_ui":"D001330","descriptor_name":"Electronic Data Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001330","descriptor_name":"Electronic Data Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001330","descriptor_name":"Electronic Data Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btq436","is_oa":false,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btq436","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":false,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:20702401","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20702401","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:scholarbank.nus.edu.sg:10635/65798","is_oa":false,"landing_page_url":"http://scholarbank.nus.edu.sg/handle/10635/65798","pdf_url":null,"source":{"id":"https://openalex.org/S7407052290","display_name":"National University of Singapore","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Scopus","raw_type":"Article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9","score":0.41999998688697815}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":11,"referenced_works":["https://openalex.org/W1597941165","https://openalex.org/W2002242662","https://openalex.org/W2053300710","https://openalex.org/W2075109094","https://openalex.org/W2128307328","https://openalex.org/W2155201905","https://openalex.org/W2159482845","https://openalex.org/W2163410580","https://openalex.org/W2165681080","https://openalex.org/W2582743722","https://openalex.org/W4294216483"],"related_works":["https://openalex.org/W2049578243","https://openalex.org/W1828158523","https://openalex.org/W2122079181","https://openalex.org/W2000145235","https://openalex.org/W3122045730","https://openalex.org/W2889939530","https://openalex.org/W1985848810","https://openalex.org/W2399195672","https://openalex.org/W3121881699","https://openalex.org/W2748838164"],"abstract_inverted_index":{"sanjay@nus.edu.sg":[0]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":3},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":4},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":5},{"year":2012,"cited_by_count":7}],"updated_date":"2026-02-27T16:54:17.756197","created_date":"2025-10-10T00:00:00"}
